Cow genome map

Conread name: Ova1-OVRM10078G07

Conread position: 6-439
Cow position: chr4:54955188-54955622 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 179
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 30, 0

Conread position: 6-665
Cow position: chr4:28830260-28830938 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 70

Conread position: 7-311
Cow position: chr4:41954011-41954315 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 195

Conread position: 7-350
Cow position: chr4:18516112-18516461 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 7-357
Cow position: chr4:30308217-30307882 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 235
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 29, 96

Conread position: 7-361
Cow position: chr4:157745-158091 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 253
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 29, 53

Conread position: 7-361
Cow position: chr4:528211-528569 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 63

Conread position: 7-361
Cow position: chr4:3124997-3125357 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 7-361
Cow position: chr4:9311454-9311813 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 70

Conread position: 7-409
Cow position: chr4:101712-101304 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 121

Conread position: 7-409
Cow position: chr4:602213-602619 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 379

Conread position: 7-409
Cow position: chr4:23114959-23114551 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 54

Conread position: 7-409
Cow position: chr4:47764954-47764545 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 7-409
Cow position: chr4:65224318-65223909 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 7-665
Cow position: chr4:1931404-1930715 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 257

Conread position: 7-665
Cow position: chr4:5879402-5880074 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 140

Conread position: 7-665
Cow position: chr4:6269405-6268719 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 279

Conread position: 7-665
Cow position: chr4:13547240-13547938 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 123

Conread position: 8-323
Cow position: chr4:33074165-33073851 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 18

Conread position: 8-348
Cow position: chr4:36895591-36895937 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 8-349
Cow position: chr4:16359123-16359451 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 74

Conread position: 8-349
Cow position: chr4:41330657-41331005 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 8-350
Cow position: chr4:43320419-43320071 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 8-350
Cow position: chr4:46713115-46712776 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 176

Conread position: 8-357
Cow position: chr4:355133-355483 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 86

Conread position: 8-357
Cow position: chr4:3960813-3961164 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 19

Conread position: 8-357
Cow position: chr4:13491790-13492148 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 8-357
Cow position: chr4:24445981-24445627 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 44

Conread position: 8-357
Cow position: chr4:29532497-29532142 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 8-357
Cow position: chr4:33493028-33493384 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 8-357
Cow position: chr4:45050078-45049727 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 8-362
Cow position: chr4:43880328-43880686 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 68

Conread position: 8-367
Cow position: chr4:44724303-44724665 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 58

Conread position: 8-648
Cow position: chr4:6491129-6490470 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 476

Conread position: 8-654
Cow position: chr4:8598909-8598255 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 11

Conread position: 8-665
Cow position: chr4:4905372-4906055 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 19

Conread position: 8-665
Cow position: chr4:25600383-25599710 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 227

Conread position: 8-665
Cow position: chr4:48025623-48026306 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 19

Conread position: 9-347
Cow position: chr4:3357942-3358280 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 299

Conread position: 9-350
Cow position: chr4:1050404-1050055 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 0

Conread position: 14-361
Cow position: chr4:16055817-16056180 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 249
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 22, 0

Conread position: 15-358
Cow position: chr4:1464688-1464355 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 31

Conread position: 32-311
Cow position: chr4:41118369-41118650 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 0

Conread position: 35-664
Cow position: chr4:46663458-46664099 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 49

Conread position: 40-647
Cow position: chr4:40825000-40824359 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 40-648
Cow position: chr4:22471460-22472063 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 402
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 42, 29

Conread position: 41-232
Cow position: chr4:10407991-10408182 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 27, 14

Conread position: 41-356
Cow position: chr4:60630994-60630681 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 216
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 22, 156

Conread position: 49-368
Cow position: chr4:6449624-6449309 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 219
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 97, 24

Conread position: 49-648
Cow position: chr4:60673167-60673757 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 148

Conread position: 57-366
Cow position: chr4:66925276-66925586 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 19

Conread position: 57-665
Cow position: chr4:21338712-21338094 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 27

Conread position: 60-358
Cow position: chr4:54190148-54190428 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 219
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 13, 0

Conread position: 63-304
Cow position: chr4:57978690-57978931 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 73-665
Cow position: chr4:12241938-12241309 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 612

Conread position: 74-643
Cow position: chr4:34185566-34184990 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 10

Conread position: 77-358
Cow position: chr4:21358953-21359218 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 197
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 244, 93

Conread position: 77-665
Cow position: chr4:17926967-17926346 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 236

Conread position: 81-374
Cow position: chr4:47718299-47718019 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 201
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 229, 100

Conread position: 94-357
Cow position: chr4:31668621-31668886 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 197
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 204, 125

Conread position: 102-323
Cow position: chr4:11617750-11617978 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 168
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 126, 218

Conread position: 104-357
Cow position: chr4:1371674-1371442 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 182
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 205, 31

Conread position: 132-361
Cow position: chr4:60265445-60265210 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 177
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 94, 68

Conread position: 135-374
Cow position: chr4:27442441-27442678 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 169
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 174, 67

Conread position: 169-361
Cow position: chr4:32211545-32211743 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 149
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 39, 0

Conread position: 200-591
Cow position: chr4:42927166-42927568 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 265
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 38, 14

Conread position: 211-409
Cow position: chr4:18425096-18424895 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 108, 0

Conread position: 212-361
Cow position: chr4:10408200-10408357 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 130
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 22, 0

Conread position: 221-361
Cow position: chr4:66179554-66179412 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 118
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 86, 13

Conread position: 262-665
Cow position: chr4:27332926-27333344 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 193

Conread position: 329-665
Cow position: chr4:43880679-43881017 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 105

Conread position: 356-664
Cow position: chr4:60264967-60264660 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 76

Conread position: 356-665
Cow position: chr4:65223937-65223625 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 78

Conread position: 358-665
Cow position: chr4:101330-101024 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 76

Conread position: 358-665
Cow position: chr4:528592-528902 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 293

Conread position: 358-665
Cow position: chr4:16056203-16056510 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 76

Conread position: 358-665
Cow position: chr4:18424921-18424616 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 76

Conread position: 358-665
Cow position: chr4:30307853-30307550 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 76

Conread position: 358-665
Cow position: chr4:32211766-32212076 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 76

Conread position: 361-665
Cow position: chr4:18516498-18516805 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 73

Conread position: 362-648
Cow position: chr4:36895977-36896264 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-648
Cow position: chr4:44724686-44724978 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 72

Conread position: 362-648
Cow position: chr4:57979234-57979523 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 137

Conread position: 362-665
Cow position: chr4:3961195-3961500 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 72

Conread position: 362-665
Cow position: chr4:24445596-24445292 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 287

Conread position: 362-665
Cow position: chr4:41119615-41119922 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 73

Conread position: 362-665
Cow position: chr4:45049695-45049389 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 289

Conread position: 362-665
Cow position: chr4:47718004-47717698 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 73

Conread position: 363-665
Cow position: chr4:602598-602902 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 154

Conread position: 363-665
Cow position: chr4:39272336-39272027 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 222
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 69, 58

Conread position: 363-665
Cow position: chr4:66925609-66925905 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 58

Conread position: 379-648
Cow position: chr4:29532094-29531820 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 55

Conread position: 440-648
Cow position: chr4:12586985-12587193 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 502-665
Cow position: chr4:27443203-27443366 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 132
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 89, 150

Conread position: 510-665
Cow position: chr4:9587020-9587172 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 135, 0

Show alignments to all cow chromosomes.