• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Ova1-OVRM10092F12
        

               
Conread position:
               
135-636
               

               
Cow position:
               
chr1:25184200-25183672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 162
               

               
Conread position:
               
164-717
               

               
Cow position:
               
chr1:19466078-19465539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 18
               

               
Conread position:
               
169-476
               

               
Cow position:
               
chr1:46939840-46940142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
52, 32
               

               
Conread position:
               
171-454
               

               
Cow position:
               
chr1:11021062-11020774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
7, 38
               

               
Conread position:
               
172-430
               

               
Cow position:
               
chr1:56635114-56634859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
23, 10
               

               
Conread position:
               
172-454
               

               
Cow position:
               
chr1:54478345-54478061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
28, 9
               

               
Conread position:
               
173-716
               

               
Cow position:
               
chr1:26702190-26702718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 19
               

               
Conread position:
               
179-387
               

               
Cow position:
               
chr1:80438747-80438956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
105, 31
               

               
Conread position:
               
181-700
               

               
Cow position:
               
chr1:40497601-40497071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 26
               

               
Conread position:
               
186-719
               

               
Cow position:
               
chr1:18223871-18224403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 26
               

               
Conread position:
               
192-714
               

               
Cow position:
               
chr1:61661304-61661831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 11
               

               
Conread position:
               
193-345
               

               
Cow position:
               
chr1:65909523-65909375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
194-405
               

               
Cow position:
               
chr1:74956025-74956236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
16, 74
               

               
Conread position:
               
194-432
               

               
Cow position:
               
chr1:71119512-71119272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
9, 94
               

               
Conread position:
               
194-451
               

               
Cow position:
               
chr1:4291158-4290900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
12, 84
               

               
Conread position:
               
194-502
               

               
Cow position:
               
chr1:63434814-63435112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
90, 15
               

               
Conread position:
               
194-525
               

               
Cow position:
               
chr1:5872975-5873305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 79
               

               
Conread position:
               
194-596
               

               
Cow position:
               
chr1:10719486-10719897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 79
               

               
Conread position:
               
194-638
               

               
Cow position:
               
chr1:78783540-78783108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 34
               

               
Conread position:
               
194-715
               

               
Cow position:
               
chr1:43352662-43353169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 93
               

               
Conread position:
               
197-555
               

               
Cow position:
               
chr1:31348448-31348795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
9, 37
               

               
Conread position:
               
197-719
               

               
Cow position:
               
chr1:16972850-16973377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 74
               

               
Conread position:
               
197-719
               

               
Cow position:
               
chr1:44165075-44164555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 75
               

               
Conread position:
               
197-719
               

               
Cow position:
               
chr1:97100325-97100851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 76
               

               
Conread position:
               
198-335
               

               
Cow position:
               
chr1:50045790-50045658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
198-354
               

               
Cow position:
               
chr1:101771894-101771748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
198-378
               

               
Cow position:
               
chr1:84235341-84235516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
198-453
               

               
Cow position:
               
chr1:2765402-2765157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
8, 20
               

               
Conread position:
               
198-537
               

               
Cow position:
               
chr1:80764547-80764896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 65
               

               
Conread position:
               
198-580
               

               
Cow position:
               
chr1:94526490-94526108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 27
               

               
Conread position:
               
201-404
               

               
Cow position:
               
chr1:34771516-34771715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
13, 45
               

               
Conread position:
               
201-432
               

               
Cow position:
               
chr1:71078969-71079192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
21, 72
               

               
Conread position:
               
201-432
               

               
Cow position:
               
chr1:81277213-81277440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
13, 96
               

               
Conread position:
               
201-439
               

               
Cow position:
               
chr1:81319279-81319044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
131, 22
               

               
Conread position:
               
201-449
               

               
Cow position:
               
chr1:68826917-68827161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
156, 74
               

               
Conread position:
               
201-451
               

               
Cow position:
               
chr1:79165095-79165350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
27, 76
               

               
Conread position:
               
201-453
               

               
Cow position:
               
chr1:32244408-32244659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
10, 74
               

               
Conread position:
               
201-453
               

               
Cow position:
               
chr1:57635449-57635207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
156, 66
               

               
Conread position:
               
201-476
               

               
Cow position:
               
chr1:635181-634908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
101, 73
               

               
Conread position:
               
201-546
               

               
Cow position:
               
chr1:100551957-100551609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
42, 34
               

               
Conread position:
               
201-658
               

               
Cow position:
               
chr1:666353-665909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 74
               

               
Conread position:
               
201-719
               

               
Cow position:
               
chr1:96478686-96478172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 96
               

               
Conread position:
               
202-424
               

               
Cow position:
               
chr1:54162818-54163041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
12, 86
               

               
Conread position:
               
202-425
               

               
Cow position:
               
chr1:67407194-67407406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
66, 16
               

               
Conread position:
               
202-557
               

               
Cow position:
               
chr1:8243363-8243013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
171, 93
               

               
Conread position:
               
202-693
               

               
Cow position:
               
chr1:68817816-68818310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 9
               

               
Conread position:
               
203-345
               

               
Cow position:
               
chr1:46205806-46205666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
11, 72
               

               
Conread position:
               
203-390
               

               
Cow position:
               
chr1:765580-765770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
9, 60
               

               
Conread position:
               
203-411
               

               
Cow position:
               
chr1:64938958-64939160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
142, 14
               

               
Conread position:
               
203-446
               

               
Cow position:
               
chr1:14379549-14379783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
6, 23
               

               
Conread position:
               
203-447
               

               
Cow position:
               
chr1:49131131-49131376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
147, 14
               

               
Conread position:
               
203-449
               

               
Cow position:
               
chr1:97619850-97620096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 70
               

               
Conread position:
               
203-451
               

               
Cow position:
               
chr1:22777558-22777809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 97
               

               
Conread position:
               
203-454
               

               
Cow position:
               
chr1:82337796-82338046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
145, 22
               

               
Conread position:
               
203-468
               

               
Cow position:
               
chr1:55686218-55686494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
57, 7
               

               
Conread position:
               
203-611
               

               
Cow position:
               
chr1:102349767-102350185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
12, 73
               

               
Conread position:
               
203-676
               

               
Cow position:
               
chr1:84255747-84255281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 8
               

               
Conread position:
               
203-719
               

               
Cow position:
               
chr1:21679136-21678631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 7
               

               
Conread position:
               
204-350
               

               
Cow position:
               
chr1:75347605-75347464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
204-356
               

               
Cow position:
               
chr1:52449623-52449770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
204-364
               

               
Cow position:
               
chr1:42398207-42398368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 73
               

               
Conread position:
               
204-408
               

               
Cow position:
               
chr1:84015863-84015656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
98, 67
               

               
Conread position:
               
204-432
               

               
Cow position:
               
chr1:94404198-94403977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
23, 69
               

               
Conread position:
               
204-436
               

               
Cow position:
               
chr1:56643606-56643832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 13
               

               
Conread position:
               
204-443
               

               
Cow position:
               
chr1:50679299-50679536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
98, 6
               

               
Conread position:
               
204-464
               

               
Cow position:
               
chr1:43839513-43839256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
133, 75
               

               
Conread position:
               
204-645
               

               
Cow position:
               
chr1:99807737-99808185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 7
               

               
Conread position:
               
204-658
               

               
Cow position:
               
chr1:63390788-63391235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 15
               

               
Conread position:
               
204-717
               

               
Cow position:
               
chr1:29916392-29915891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 14
               

               
Conread position:
               
204-719
               

               
Cow position:
               
chr1:12595921-12596433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 7
               

               
Conread position:
               
205-365
               

               
Cow position:
               
chr1:8192750-8192902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
152, 12
               

               
Conread position:
               
205-398
               

               
Cow position:
               
chr1:4414225-4414413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
152, 12
               

               
Conread position:
               
205-432
               

               
Cow position:
               
chr1:8869679-8869903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
152, 63
               

               
Conread position:
               
205-432
               

               
Cow position:
               
chr1:88529816-88530026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
205-449
               

               
Cow position:
               
chr1:46839585-46839338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
141, 90
               

               
Conread position:
               
205-453
               

               
Cow position:
               
chr1:56748579-56748330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
19, 71
               

               
Conread position:
               
205-453
               

               
Cow position:
               
chr1:70533957-70534194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 46
               

               
Conread position:
               
205-453
               

               
Cow position:
               
chr1:74947137-74947377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
21, 69
               

               
Conread position:
               
205-494
               

               
Cow position:
               
chr1:26688491-26688779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 67
               

               
Conread position:
               
205-520
               

               
Cow position:
               
chr1:57900753-57901064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 70
               

               
Conread position:
               
205-557
               

               
Cow position:
               
chr1:48105450-48105801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
152, 64
               

               
Conread position:
               
205-559
               

               
Cow position:
               
chr1:84239129-84239453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
152, 70
               

               
Conread position:
               
205-719
               

               
Cow position:
               
chr1:1403497-1403973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
205-719
               

               
Cow position:
               
chr1:5162064-5162589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 67
               

               
Conread position:
               
206-436
               

               
Cow position:
               
chr1:51836553-51836328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
206-451
               

               
Cow position:
               
chr1:31871408-31871162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 66
               

               
Conread position:
               
207-586
               

               
Cow position:
               
chr1:50634418-50634805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 66
               

               
Conread position:
               
208-428
               

               
Cow position:
               
chr1:25886098-25886310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
130, 9
               

               
Conread position:
               
208-453
               

               
Cow position:
               
chr1:95765109-95765349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
140, 59
               

               
Conread position:
               
208-456
               

               
Cow position:
               
chr1:90864310-90864563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
17, 69
               

               
Conread position:
               
208-539
               

               
Cow position:
               
chr1:9443868-9444186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 49
               

               
Conread position:
               
208-580
               

               
Cow position:
               
chr1:9869866-9870238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 71
               

               
Conread position:
               
208-716
               

               
Cow position:
               
chr1:74822430-74821928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 59
               

               
Conread position:
               
209-431
               

               
Cow position:
               
chr1:51770069-51769847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
6, 49
               

               
Conread position:
               
209-487
               

               
Cow position:
               
chr1:81472853-81472585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
209-557
               

               
Cow position:
               
chr1:3035012-3035354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
17, 53
               

               
Conread position:
               
211-439
               

               
Cow position:
               
chr1:63905493-63905720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
16, 59
               

               
Conread position:
               
211-446
               

               
Cow position:
               
chr1:6881248-6881478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
146, 45
               

               
Conread position:
               
211-546
               

               
Cow position:
               
chr1:69695014-69695359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 264
               

               
Conread position:
               
211-551
               

               
Cow position:
               
chr1:78750709-78751060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 61
               

               
Conread position:
               
211-663
               

               
Cow position:
               
chr1:99642387-99642827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
211-719
               

               
Cow position:
               
chr1:57575781-57576290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 58
               

               
Conread position:
               
211-719
               

               
Cow position:
               
chr1:79591085-79590574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 64
               

               
Conread position:
               
212-442
               

               
Cow position:
               
chr1:25793458-25793689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
136, 60
               

               
Conread position:
               
212-443
               

               
Cow position:
               
chr1:67995108-67994880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
116, 59
               

               
Conread position:
               
212-444
               

               
Cow position:
               
chr1:47233503-47233726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
212-639
               

               
Cow position:
               
chr1:61564773-61564349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 60
               

               
Conread position:
               
212-669
               

               
Cow position:
               
chr1:73522171-73522616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 51
               

               
Conread position:
               
212-719
               

               
Cow position:
               
chr1:82406576-82407086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 60
               

               
Conread position:
               
213-386
               

               
Cow position:
               
chr1:89443506-89443670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
144, 52
               

               
Conread position:
               
213-397
               

               
Cow position:
               
chr1:89548167-89547985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 60
               

               
Conread position:
               
213-418
               

               
Cow position:
               
chr1:69415737-69415943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 60
               

               
Conread position:
               
213-418
               

               
Cow position:
               
chr1:97786156-97785958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
213-424
               

               
Cow position:
               
chr1:101812300-101812506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
88, 59
               

               
Conread position:
               
213-441
               

               
Cow position:
               
chr1:78857345-78857570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
18, 10
               

               
Conread position:
               
213-443
               

               
Cow position:
               
chr1:7142872-7143099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 58
               

               
Conread position:
               
213-453
               

               
Cow position:
               
chr1:29975627-29975857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
213-453
               

               
Cow position:
               
chr1:30413569-30413325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 63
               

               
Conread position:
               
213-453
               

               
Cow position:
               
chr1:56408593-56408353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
135, 59
               

               
Conread position:
               
213-453
               

               
Cow position:
               
chr1:57264020-57264246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
213-454
               

               
Cow position:
               
chr1:98613210-98612980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
144, 34
               

               
Conread position:
               
213-467
               

               
Cow position:
               
chr1:32341234-32341481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
136, 15
               

               
Conread position:
               
213-511
               

               
Cow position:
               
chr1:21934200-21934497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
88, 55
               

               
Conread position:
               
213-557
               

               
Cow position:
               
chr1:82884413-82884750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 57
               

               
Conread position:
               
213-579
               

               
Cow position:
               
chr1:3167099-3167453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
135, 36
               

               
Conread position:
               
213-580
               

               
Cow position:
               
chr1:7800589-7800223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 59
               

               
Conread position:
               
213-581
               

               
Cow position:
               
chr1:35843960-35844315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 25
               

               
Conread position:
               
214-363
               

               
Cow position:
               
chr1:90413354-90413210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
214-384
               

               
Cow position:
               
chr1:42174616-42174780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
143, 74
               

               
Conread position:
               
214-714
               

               
Cow position:
               
chr1:72011835-72012326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 5
               

               
Conread position:
               
214-719
               

               
Cow position:
               
chr1:41697034-41696537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 62
               

               
Conread position:
               
214-719
               

               
Cow position:
               
chr1:53458671-53458180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 45
               

               
Conread position:
               
215-345
               

               
Cow position:
               
chr1:63314803-63314677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
217-325
               

               
Cow position:
               
chr1:44746836-44746734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
217-369
               

               
Cow position:
               
chr1:13195449-13195601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
133, 46
               

               
Conread position:
               
217-369
               

               
Cow position:
               
chr1:45638460-45638307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
135, 55
               

               
Conread position:
               
217-401
               

               
Cow position:
               
chr1:58825512-58825340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
140, 33
               

               
Conread position:
               
217-417
               

               
Cow position:
               
chr1:5061999-5061797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
133, 52
               

               
Conread position:
               
217-429
               

               
Cow position:
               
chr1:22910343-22910137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
53, 75
               

               
Conread position:
               
217-431
               

               
Cow position:
               
chr1:64189469-64189264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
140, 54
               

               
Conread position:
               
217-445
               

               
Cow position:
               
chr1:75744831-75744608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
140, 7
               

               
Conread position:
               
217-447
               

               
Cow position:
               
chr1:93110649-93110879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
140, 70
               

               
Conread position:
               
217-452
               

               
Cow position:
               
chr1:85783496-85783267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 41
               

               
Conread position:
               
217-454
               

               
Cow position:
               
chr1:43505496-43505262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
125, 49
               

               
Conread position:
               
217-454
               

               
Cow position:
               
chr1:77118564-77118791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
226, 45
               

               
Conread position:
               
217-455
               

               
Cow position:
               
chr1:90423112-90423348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 56
               

               
Conread position:
               
217-488
               

               
Cow position:
               
chr1:77132575-77132309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
46, 78
               

               
Conread position:
               
217-649
               

               
Cow position:
               
chr1:78092007-78091578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 58
               

               
Conread position:
               
217-719
               

               
Cow position:
               
chr1:6794953-6795473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 236
               

               
Conread position:
               
217-719
               

               
Cow position:
               
chr1:14528224-14528731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 74
               

               
Conread position:
               
217-719
               

               
Cow position:
               
chr1:41004391-41004889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 52
               

               
Conread position:
               
217-719
               

               
Cow position:
               
chr1:41735652-41736137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 55
               

               
Conread position:
               
217-719
               

               
Cow position:
               
chr1:53425148-53424664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 63
               

               
Conread position:
               
217-719
               

               
Cow position:
               
chr1:61724050-61724544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 130
               

               
Conread position:
               
217-719
               

               
Cow position:
               
chr1:76850754-76851273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 45
               

               
Conread position:
               
217-719
               

               
Cow position:
               
chr1:98551688-98551197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 56
               

               
Conread position:
               
218-411
               

               
Cow position:
               
chr1:15691304-15691119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
138, 53
               

               
Conread position:
               
218-432
               

               
Cow position:
               
chr1:20288089-20287878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
134, 44
               

               
Conread position:
               
218-443
               

               
Cow position:
               
chr1:81563707-81563483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
130, 57
               

               
Conread position:
               
218-453
               

               
Cow position:
               
chr1:13456110-13455883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
130, 33
               

               
Conread position:
               
218-461
               

               
Cow position:
               
chr1:73196263-73196508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
130, 50
               

               
Conread position:
               
218-475
               

               
Cow position:
               
chr1:60907345-60907079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
84, 72
               

               
Conread position:
               
218-499
               

               
Cow position:
               
chr1:22448616-22448890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
139, 57
               

               
Conread position:
               
218-625
               

               
Cow position:
               
chr1:80973635-80974058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
218-710
               

               
Cow position:
               
chr1:45288901-45289382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 57
               

               
Conread position:
               
218-719
               

               
Cow position:
               
chr1:23099870-23099363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 53
               

               
Conread position:
               
218-719
               

               
Cow position:
               
chr1:85361831-85361330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 42
               

               
Conread position:
               
219-656
               

               
Cow position:
               
chr1:89342025-89342449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 50
               

               
Conread position:
               
220-532
               

               
Cow position:
               
chr1:3657396-3657705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 17
               

               
Conread position:
               
220-633
               

               
Cow position:
               
chr1:28176978-28176566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
74, 55
               

               
Conread position:
               
221-437
               

               
Cow position:
               
chr1:62732544-62732331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
121, 46
               

               
Conread position:
               
221-498
               

               
Cow position:
               
chr1:47008999-47008727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
128, 44
               

               
Conread position:
               
221-542
               

               
Cow position:
               
chr1:63504301-63503992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
127, 39
               

               
Conread position:
               
223-439
               

               
Cow position:
               
chr1:59650232-59650020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
134, 65
               

               
Conread position:
               
225-432
               

               
Cow position:
               
chr1:70236324-70236532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
79, 46
               

               
Conread position:
               
225-449
               

               
Cow position:
               
chr1:97806752-97806536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
132, 43
               

               
Conread position:
               
225-466
               

               
Cow position:
               
chr1:45019844-45020077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
144, 41
               

               
Conread position:
               
225-548
               

               
Cow position:
               
chr1:21508355-21508036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
133, 47
               

               
Conread position:
               
225-711
               

               
Cow position:
               
chr1:46886056-46885576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 33
               

               
Conread position:
               
225-719
               

               
Cow position:
               
chr1:75967395-75966890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 26
               

               
Conread position:
               
230-365
               

               
Cow position:
               
chr1:75199100-75198972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
127, 41
               

               
Conread position:
               
230-590
               

               
Cow position:
               
chr1:91816813-91817164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 49
               

               
Conread position:
               
231-444
               

               
Cow position:
               
chr1:89395559-89395340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
233-664
               

               
Cow position:
               
chr1:13056572-13056987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 38
               

               
Conread position:
               
234-719
               

               
Cow position:
               
chr1:24235561-24236040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 36
               

               
Conread position:
               
238-412
               

               
Cow position:
               
chr1:14981170-14981338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
104, 21
               

               
Conread position:
               
239-719
               

               
Cow position:
               
chr1:89742046-89742535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 36
               

               
Conread position:
               
245-506
               

               
Cow position:
               
chr1:100800307-100800044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
8, 165
               

               
Conread position:
               
259-613
               

               
Cow position:
               
chr1:81161947-81161594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 78
               

               
Conread position:
               
259-718
               

               
Cow position:
               
chr1:3556554-3557028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 213
               

               
Conread position:
               
261-639
               

               
Cow position:
               
chr1:52039570-52039193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 43
               

               
Conread position:
               
264-719
               

               
Cow position:
               
chr1:68253522-68253068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 290
               

               
Conread position:
               
268-666
               

               
Cow position:
               
chr1:22827093-22826696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 78
               

               
Conread position:
               
268-685
               

               
Cow position:
               
chr1:81569105-81569525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 296
               

               
Conread position:
               
268-719
               

               
Cow position:
               
chr1:4374413-4374856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 52
               

               
Conread position:
               
268-719
               

               
Cow position:
               
chr1:40062378-40061921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 298
               

               
Conread position:
               
281-620
               

               
Cow position:
               
chr1:48083469-48083135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 60
               
Show alignments to all cow chromosomes.