Cow genome map
| Conread name: | Ova1-OVRM10092F12 |
| Conread position: | 88-717 |
| Cow position: | chr12:40910239-40910847 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 70 |
| Conread position: | 130-604 |
| Cow position: | chr12:45541758-45541273 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 154 |
| Conread position: | 161-503 |
| Cow position: | chr12:33323513-33323853 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 242 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 39, 21 |
| Conread position: | 164-525 |
| Cow position: | chr12:8868894-8869277 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 278 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 11, 19 |
| Conread position: | 173-443 |
| Cow position: | chr12:5797559-5797839 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 53, 151 |
| Conread position: | 181-514 |
| Cow position: | chr12:27038793-27039129 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 188-443 |
| Cow position: | chr12:11696635-11696399 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 140, 15 |
| Conread position: | 194-445 |
| Cow position: | chr12:19715090-19715324 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 194-454 |
| Cow position: | chr12:41474037-41473788 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 254, 41 |
| Conread position: | 194-719 |
| Cow position: | chr12:31429620-31430135 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 75 |
| Conread position: | 197-445 |
| Cow position: | chr12:5714575-5714332 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 160, 68 |
| Conread position: | 197-718 |
| Cow position: | chr12:17472279-17472783 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 75 |
| Conread position: | 198-430 |
| Cow position: | chr12:18417516-18417281 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 150, 68 |
| Conread position: | 198-539 |
| Cow position: | chr12:24559302-24558949 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 61 |
| Conread position: | 201-454 |
| Cow position: | chr12:25619428-25619683 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 73 |
| Conread position: | 201-531 |
| Cow position: | chr12:44595867-44596197 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 233 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 11, 75 |
| Conread position: | 201-700 |
| Cow position: | chr12:22047413-22046943 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 9 |
| Conread position: | 201-719 |
| Cow position: | chr12:1773722-1774224 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 83 |
| Conread position: | 202-666 |
| Cow position: | chr12:794503-794006 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 467 |
| Conread position: | 203-446 |
| Cow position: | chr12:23379520-23379276 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 13, 78 |
| Conread position: | 203-455 |
| Cow position: | chr12:33458084-33457843 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 203-486 |
| Cow position: | chr12:32400142-32399856 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 11, 85 |
| Conread position: | 203-505 |
| Cow position: | chr12:41979357-41979656 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 69 |
| Conread position: | 204-369 |
| Cow position: | chr12:37394657-37394484 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 59, 104 |
| Conread position: | 204-401 |
| Cow position: | chr12:38484453-38484651 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 90, 13 |
| Conread position: | 204-468 |
| Cow position: | chr12:44622295-44622037 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 18, 7 |
| Conread position: | 204-539 |
| Cow position: | chr12:30596408-30596075 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 14 |
| Conread position: | 204-719 |
| Cow position: | chr12:18011375-18010865 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 25 |
| Conread position: | 204-719 |
| Cow position: | chr12:24440759-24440243 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 71 |
| Conread position: | 205-372 |
| Cow position: | chr12:21861846-21862008 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 152, 67 |
| Conread position: | 205-453 |
| Cow position: | chr12:12938984-12939235 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 63 |
| Conread position: | 205-499 |
| Cow position: | chr12:1223404-1223693 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 205-525 |
| Cow position: | chr12:25561310-25560994 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 71 |
| Conread position: | 205-546 |
| Cow position: | chr12:31959826-31959496 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 152, 68 |
| Conread position: | 205-605 |
| Cow position: | chr12:47799886-47800273 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 346, 57 |
| Conread position: | 205-715 |
| Cow position: | chr12:3197209-3196685 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 480 |
| Conread position: | 206-378 |
| Cow position: | chr12:6117840-6117670 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 142, 65 |
| Conread position: | 206-719 |
| Cow position: | chr12:46333288-46332809 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 61 |
| Conread position: | 207-445 |
| Cow position: | chr12:40270155-40270383 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 100, 64 |
| Conread position: | 207-526 |
| Cow position: | chr12:32987637-32987319 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 140 |
| Conread position: | 208-454 |
| Cow position: | chr12:18769137-18769382 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 64 |
| Conread position: | 209-441 |
| Cow position: | chr12:6164090-6164322 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 139, 66 |
| Conread position: | 209-454 |
| Cow position: | chr12:45820433-45820663 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 123, 54 |
| Conread position: | 210-459 |
| Cow position: | chr12:30728304-30728551 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 124, 15 |
| Conread position: | 211-670 |
| Cow position: | chr12:19691300-19691758 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 62 |
| Conread position: | 211-694 |
| Cow position: | chr12:3212261-3211776 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 61 |
| Conread position: | 212-449 |
| Cow position: | chr12:15622513-15622757 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 202 |
| Conread position: | 212-711 |
| Cow position: | chr12:15173757-15173255 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 212-718 |
| Cow position: | chr12:20312243-20312734 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 59 |
| Conread position: | 213-350 |
| Cow position: | chr12:27495942-27495808 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 213-405 |
| Cow position: | chr12:27938846-27938657 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 17, 77 |
| Conread position: | 213-445 |
| Cow position: | chr12:5905985-5905760 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 144, 62 |
| Conread position: | 213-458 |
| Cow position: | chr12:18518598-18518361 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 14, 51 |
| Conread position: | 213-459 |
| Cow position: | chr12:30805785-30805543 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 194, 59 |
| Conread position: | 213-466 |
| Cow position: | chr12:34103203-34103456 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 115, 34 |
| Conread position: | 213-538 |
| Cow position: | chr12:5631951-5632264 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 213-629 |
| Cow position: | chr12:16543645-16544065 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 303 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 142, 56 |
| Conread position: | 214-491 |
| Cow position: | chr12:16851079-16851351 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 54 |
| Conread position: | 214-539 |
| Cow position: | chr12:35707000-35707320 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 229, 41 |
| Conread position: | 214-557 |
| Cow position: | chr12:35807610-35807274 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 57 |
| Conread position: | 214-718 |
| Cow position: | chr12:17031545-17031043 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 61 |
| Conread position: | 214-719 |
| Cow position: | chr12:21829017-21828498 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 48 |
| Conread position: | 215-538 |
| Cow position: | chr12:3568874-3568560 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 122, 44 |
| Conread position: | 217-422 |
| Cow position: | chr12:34089769-34089558 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 129, 78 |
| Conread position: | 217-422 |
| Cow position: | chr12:35354714-35354510 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 8, 51 |
| Conread position: | 217-454 |
| Cow position: | chr12:3757110-3757343 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 186 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 84, 54 |
| Conread position: | 217-494 |
| Cow position: | chr12:18076461-18076190 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 117, 58 |
| Conread position: | 218-445 |
| Cow position: | chr12:29694120-29694334 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 218-482 |
| Cow position: | chr12:34466081-34466330 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 51, 85 |
| Conread position: | 218-544 |
| Cow position: | chr12:28010974-28011295 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 12 |
| Conread position: | 218-557 |
| Cow position: | chr12:42254593-42254251 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 77, 57 |
| Conread position: | 218-563 |
| Cow position: | chr12:20326700-20326360 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 49 |
| Conread position: | 218-566 |
| Cow position: | chr12:42181212-42181557 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 57 |
| Conread position: | 219-543 |
| Cow position: | chr12:30753648-30753331 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 80 |
| Conread position: | 219-716 |
| Cow position: | chr12:26868869-26869353 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 53 |
| Conread position: | 225-448 |
| Cow position: | chr12:1848615-1848838 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 123, 46 |
| Conread position: | 226-453 |
| Cow position: | chr12:30688260-30688033 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 46 |
| Conread position: | 231-572 |
| Cow position: | chr12:3880339-3880677 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 243 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 117, 38 |
| Conread position: | 240-475 |
| Cow position: | chr12:34148445-34148678 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 92, 29 |
| Conread position: | 242-454 |
| Cow position: | chr12:11498161-11498370 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 112, 19 |
| Conread position: | 252-630 |
| Cow position: | chr12:16359771-16359398 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 300 |
| Conread position: | 267-719 |
| Cow position: | chr12:47486407-47485966 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 60 |
| Conread position: | 268-432 |
| Cow position: | chr12:12178803-12178637 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 268-451 |
| Cow position: | chr12:9229601-9229785 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 268-717 |
| Cow position: | chr12:4593985-4593528 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 294 |
Show alignments to all cow chromosomes.