Cow genome map

Conread name: Ova1-OVRM10092F12

Conread position: 128-719
Cow position: chr21:31576646-31576045 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 236

Conread position: 135-351
Cow position: chr21:31200307-31200073 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 168
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 37, 148

Conread position: 135-368
Cow position: chr21:18782381-18782147 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 179
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 22, 74

Conread position: 171-402
Cow position: chr21:8187430-8187666 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 171
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 99, 104

Conread position: 171-546
Cow position: chr21:12973167-12973546 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 26

Conread position: 172-453
Cow position: chr21:34739918-34739646 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 197
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 19, 92

Conread position: 173-481
Cow position: chr21:41878544-41878245 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 209
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 50, 9

Conread position: 188-470
Cow position: chr21:48250963-48251250 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 196
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 16, 90

Conread position: 193-427
Cow position: chr21:49662070-49662294 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 13, 71

Conread position: 193-538
Cow position: chr21:28997848-28998195 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 18

Conread position: 194-524
Cow position: chr21:36795653-36795326 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 237
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 33, 75

Conread position: 194-620
Cow position: chr21:9416300-9415875 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 81

Conread position: 194-719
Cow position: chr21:34390925-34391433 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 17

Conread position: 197-448
Cow position: chr21:33727416-33727659 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 171
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 133, 66

Conread position: 197-719
Cow position: chr21:15742041-15742570 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 159

Conread position: 198-632
Cow position: chr21:24865207-24864769 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 70

Conread position: 199-590
Cow position: chr21:41974327-41974719 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 71

Conread position: 201-400
Cow position: chr21:6316257-6316050 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 106, 9

Conread position: 201-454
Cow position: chr21:3818254-3818012 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 171
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 201-719
Cow position: chr21:43240910-43240397 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 10

Conread position: 202-594
Cow position: chr21:17616273-17616658 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 268
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 19, 58

Conread position: 203-445
Cow position: chr21:42135577-42135819 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 145, 72

Conread position: 203-525
Cow position: chr21:43357216-43357536 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 31

Conread position: 203-635
Cow position: chr21:8289592-8290026 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 27

Conread position: 203-696
Cow position: chr21:23192472-23192963 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 14

Conread position: 204-392
Cow position: chr21:41583313-41583127 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 145
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 98, 19

Conread position: 204-445
Cow position: chr21:21077368-21077134 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 164
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 223, 58

Conread position: 204-511
Cow position: chr21:13035001-13035310 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 219
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 12, 69

Conread position: 204-530
Cow position: chr21:36793937-36793602 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 246
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 12, 77

Conread position: 204-544
Cow position: chr21:11640064-11639727 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 236
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 23, 7

Conread position: 204-584
Cow position: chr21:40786716-40786341 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 13

Conread position: 204-596
Cow position: chr21:23449616-23449232 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 15

Conread position: 204-719
Cow position: chr21:47823235-47823739 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 15

Conread position: 205-369
Cow position: chr21:2412802-2412641 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 130, 12

Conread position: 205-440
Cow position: chr21:13365381-13365151 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 165
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 152, 62

Conread position: 205-453
Cow position: chr21:12801711-12801947 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 176
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 151, 63

Conread position: 205-557
Cow position: chr21:11644928-11645293 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 250
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 10, 65

Conread position: 205-719
Cow position: chr21:39401635-39401127 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 60

Conread position: 207-349
Cow position: chr21:11521010-11521145 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 208-454
Cow position: chr21:6051545-6051302 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 174
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 12, 34

Conread position: 211-350
Cow position: chr21:41595749-41595615 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 12, 0

Conread position: 211-451
Cow position: chr21:28443342-28443580 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 170
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 90, 14

Conread position: 211-532
Cow position: chr21:42170671-42170349 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 225
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 131, 64

Conread position: 211-719
Cow position: chr21:82115-81606 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 56

Conread position: 211-719
Cow position: chr21:17175185-17174675 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 17

Conread position: 211-719
Cow position: chr21:48484412-48484904 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 64

Conread position: 212-454
Cow position: chr21:29485013-29484780 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 179
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 145, 54

Conread position: 212-523
Cow position: chr21:23478684-23478989 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 7

Conread position: 212-580
Cow position: chr21:395904-395547 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 53

Conread position: 212-639
Cow position: chr21:26244953-26244551 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 287
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 15, 40

Conread position: 212-663
Cow position: chr21:7564283-7564733 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 63

Conread position: 213-393
Cow position: chr21:6058608-6058783 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 120, 51

Conread position: 213-445
Cow position: chr21:5426006-5425786 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 185
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 144, 36

Conread position: 213-446
Cow position: chr21:9353477-9353244 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 183
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 129, 60

Conread position: 213-453
Cow position: chr21:7156794-7156548 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 186
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 117, 38

Conread position: 213-470
Cow position: chr21:28626273-28626021 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 188
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 135, 48

Conread position: 213-498
Cow position: chr21:5636685-5636969 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 205
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 119, 56

Conread position: 213-543
Cow position: chr21:44754746-44755070 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 50

Conread position: 213-557
Cow position: chr21:46849094-46849427 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 63

Conread position: 213-612
Cow position: chr21:23786063-23785656 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 82

Conread position: 213-719
Cow position: chr21:23801095-23801579 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 486, 65

Conread position: 214-451
Cow position: chr21:3381051-3381282 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 168
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 101, 65

Conread position: 214-454
Cow position: chr21:17674199-17674440 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 175
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 55, 121

Conread position: 214-469
Cow position: chr21:10866911-10866656 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 184
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 138, 61

Conread position: 214-719
Cow position: chr21:4098902-4098423 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 57

Conread position: 217-349
Cow position: chr21:41514834-41514706 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 108
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 18, 55

Conread position: 217-388
Cow position: chr21:12461941-12462109 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 142, 52

Conread position: 217-403
Cow position: chr21:27624737-27624559 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 217-444
Cow position: chr21:34565183-34565407 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 175
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 127, 54

Conread position: 217-453
Cow position: chr21:45330572-45330811 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 166
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 129, 58

Conread position: 217-454
Cow position: chr21:22861028-22860798 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 164
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 140, 44

Conread position: 217-493
Cow position: chr21:20426556-20426297 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 210
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 140, 31

Conread position: 217-539
Cow position: chr21:23499799-23500110 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 59

Conread position: 217-557
Cow position: chr21:28993592-28993934 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 56

Conread position: 217-618
Cow position: chr21:32574750-32574358 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 11

Conread position: 217-639
Cow position: chr21:5597179-5596767 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 51

Conread position: 217-717
Cow position: chr21:28512556-28512076 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 9

Conread position: 217-719
Cow position: chr21:724857-725355 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 66

Conread position: 217-719
Cow position: chr21:32297479-32297973 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 36

Conread position: 218-451
Cow position: chr21:25800424-25800213 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 218-454
Cow position: chr21:37361448-37361678 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 172
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 200, 57

Conread position: 218-534
Cow position: chr21:12960873-12961197 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 229
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 128, 22

Conread position: 218-588
Cow position: chr21:13048167-13048532 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 61

Conread position: 218-637
Cow position: chr21:18494997-18494595 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 57

Conread position: 218-646
Cow position: chr21:40244468-40244040 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 57

Conread position: 218-709
Cow position: chr21:24222510-24223004 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 41

Conread position: 218-719
Cow position: chr21:29943030-29942529 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 41

Conread position: 220-441
Cow position: chr21:25286540-25286318 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 167
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 120, 51

Conread position: 220-450
Cow position: chr21:42053240-42053465 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 51

Conread position: 221-453
Cow position: chr21:35997199-35996968 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 51

Conread position: 221-454
Cow position: chr21:24094723-24094948 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 168
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 74, 0

Conread position: 225-716
Cow position: chr21:33210223-33209737 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 40

Conread position: 226-687
Cow position: chr21:30848928-30849372 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 52

Conread position: 227-380
Cow position: chr21:40312781-40312932 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 90, 31

Conread position: 227-451
Cow position: chr21:28944346-28944567 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 177
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 130, 43

Conread position: 230-455
Cow position: chr21:24714673-24714448 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 185

Conread position: 232-490
Cow position: chr21:40899356-40899096 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 189
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 7, 66

Conread position: 238-717
Cow position: chr21:48263130-48262661 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 8

Conread position: 259-510
Cow position: chr21:21223286-21223024 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 194
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 10, 168

Conread position: 259-613
Cow position: chr21:30990277-30990627 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 163

Conread position: 259-719
Cow position: chr21:29214158-29214623 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 88

Conread position: 263-719
Cow position: chr21:35897643-35898071 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 82

Conread position: 268-470
Cow position: chr21:24797670-24797475 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 145
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 78, 0

Conread position: 268-481
Cow position: chr21:30592321-30592527 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 89, 154

Conread position: 268-481
Cow position: chr21:46829287-46829495 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 89, 73

Show alignments to all cow chromosomes.