Cow genome map
| Conread name: | Ova1-OVRM10092F12 |
| Conread position: | 135-450 |
| Cow position: | chr24:28279684-28279356 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 236 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 29, 298 |
| Conread position: | 135-581 |
| Cow position: | chr24:1271830-1272293 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 59 |
| Conread position: | 172-477 |
| Cow position: | chr24:40091590-40091891 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 10 |
| Conread position: | 179-719 |
| Cow position: | chr24:17412720-17412191 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 15 |
| Conread position: | 181-639 |
| Cow position: | chr24:27810161-27809704 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 25 |
| Conread position: | 193-530 |
| Cow position: | chr24:27543518-27543844 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 10 |
| Conread position: | 197-414 |
| Cow position: | chr24:6061437-6061651 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 106, 33 |
| Conread position: | 197-454 |
| Cow position: | chr24:35794776-35795033 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 14, 60 |
| Conread position: | 197-613 |
| Cow position: | chr24:28028745-28029159 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 6, 91 |
| Conread position: | 197-663 |
| Cow position: | chr24:31324244-31323789 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 96 |
| Conread position: | 198-432 |
| Cow position: | chr24:31378715-31378484 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 103, 19 |
| Conread position: | 198-445 |
| Cow position: | chr24:39350257-39350491 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 17, 70 |
| Conread position: | 198-453 |
| Cow position: | chr24:27633368-27633122 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 14, 65 |
| Conread position: | 198-716 |
| Cow position: | chr24:39681814-39681312 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 69 |
| Conread position: | 198-717 |
| Cow position: | chr24:35569145-35568624 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 74 |
| Conread position: | 198-718 |
| Cow position: | chr24:38001778-38002290 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 91 |
| Conread position: | 199-454 |
| Cow position: | chr24:34369046-34369298 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 11, 71 |
| Conread position: | 201-460 |
| Cow position: | chr24:35529880-35529623 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 74 |
| Conread position: | 201-719 |
| Cow position: | chr24:28724391-28723873 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 51 |
| Conread position: | 203-432 |
| Cow position: | chr24:19769444-19769228 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 11, 60 |
| Conread position: | 203-489 |
| Cow position: | chr24:27054361-27054081 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 148, 7 |
| Conread position: | 203-505 |
| Cow position: | chr24:3430687-3430379 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 154, 22 |
| Conread position: | 203-673 |
| Cow position: | chr24:30860591-30860116 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 15 |
| Conread position: | 203-715 |
| Cow position: | chr24:32158319-32158821 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 66 |
| Conread position: | 203-719 |
| Cow position: | chr24:19465967-19466485 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 15 |
| Conread position: | 203-719 |
| Cow position: | chr24:28062906-28062393 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 33 |
| Conread position: | 204-484 |
| Cow position: | chr24:27341070-27341346 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 139, 13 |
| Conread position: | 204-507 |
| Cow position: | chr24:5754790-5754496 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 20 |
| Conread position: | 204-719 |
| Cow position: | chr24:6342134-6341607 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 7 |
| Conread position: | 204-719 |
| Cow position: | chr24:29063699-29064197 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 64 |
| Conread position: | 205-340 |
| Cow position: | chr24:40855145-40855014 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 205-628 |
| Cow position: | chr24:38267142-38266723 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 13 |
| Conread position: | 208-456 |
| Cow position: | chr24:24311455-24311207 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 146, 63 |
| Conread position: | 209-439 |
| Cow position: | chr24:30314080-30314313 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 138, 63 |
| Conread position: | 209-445 |
| Cow position: | chr24:25885212-25885441 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 117, 77 |
| Conread position: | 209-521 |
| Cow position: | chr24:29027998-29027693 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 68 |
| Conread position: | 209-613 |
| Cow position: | chr24:18485048-18485448 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 59 |
| Conread position: | 210-719 |
| Cow position: | chr24:27270729-27270240 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 14 |
| Conread position: | 211-432 |
| Cow position: | chr24:18390341-18390558 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 146, 61 |
| Conread position: | 211-719 |
| Cow position: | chr24:25677985-25677472 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 60 |
| Conread position: | 212-511 |
| Cow position: | chr24:39123809-39123514 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 44 |
| Conread position: | 213-350 |
| Cow position: | chr24:29691345-29691482 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 88, 59 |
| Conread position: | 213-415 |
| Cow position: | chr24:18786974-18787173 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 158, 58 |
| Conread position: | 213-443 |
| Cow position: | chr24:14746579-14746356 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 109, 58 |
| Conread position: | 213-451 |
| Cow position: | chr24:591857-591621 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 143, 5 |
| Conread position: | 213-469 |
| Cow position: | chr24:31159566-31159319 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 59 |
| Conread position: | 214-534 |
| Cow position: | chr24:37204934-37205248 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 58 |
| Conread position: | 214-719 |
| Cow position: | chr24:33230622-33230113 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 63 |
| Conread position: | 217-339 |
| Cow position: | chr24:19611951-19611834 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 217-409 |
| Cow position: | chr24:14617596-14617410 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 217-453 |
| Cow position: | chr24:37386410-37386631 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 217-494 |
| Cow position: | chr24:38347626-38347347 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 58 |
| Conread position: | 217-534 |
| Cow position: | chr24:43733912-43733599 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 51 |
| Conread position: | 217-590 |
| Cow position: | chr24:37246270-37246644 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 62 |
| Conread position: | 217-629 |
| Cow position: | chr24:20862016-20862444 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 55 |
| Conread position: | 217-716 |
| Cow position: | chr24:24250669-24250171 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 43 |
| Conread position: | 217-719 |
| Cow position: | chr24:25229116-25229637 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 77 |
| Conread position: | 218-435 |
| Cow position: | chr24:23442647-23442854 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 218-448 |
| Cow position: | chr24:35074033-35073806 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 136, 57 |
| Conread position: | 218-451 |
| Cow position: | chr24:29389181-29388961 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 218-578 |
| Cow position: | chr24:3493826-3493481 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 49 |
| Conread position: | 218-636 |
| Cow position: | chr24:17955501-17955922 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 57 |
| Conread position: | 218-664 |
| Cow position: | chr24:39440614-39441057 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 61 |
| Conread position: | 218-675 |
| Cow position: | chr24:27719815-27720258 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 51 |
| Conread position: | 219-447 |
| Cow position: | chr24:27941070-27941293 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 129, 53 |
| Conread position: | 220-716 |
| Cow position: | chr24:40130065-40129568 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 63 |
| Conread position: | 221-395 |
| Cow position: | chr24:42453937-42453764 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 127, 55 |
| Conread position: | 222-419 |
| Cow position: | chr24:43448667-43448852 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 132, 53 |
| Conread position: | 225-632 |
| Cow position: | chr24:20969866-20970258 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 227-719 |
| Cow position: | chr24:11007151-11006658 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 48 |
| Conread position: | 229-350 |
| Cow position: | chr24:30940512-30940629 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 230-464 |
| Cow position: | chr24:6913837-6914066 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 107, 65 |
| Conread position: | 230-715 |
| Cow position: | chr24:39500350-39500838 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 39 |
| Conread position: | 230-719 |
| Cow position: | chr24:32693633-32693151 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 49 |
| Conread position: | 231-528 |
| Cow position: | chr24:42916607-42916894 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 48 |
| Conread position: | 242-494 |
| Cow position: | chr24:27465661-27465897 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 176, 27 |
| Conread position: | 268-454 |
| Cow position: | chr24:18331619-18331444 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 124, 63 |
| Conread position: | 268-718 |
| Cow position: | chr24:18732228-18732664 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 74 |
| Conread position: | 274-417 |
| Cow position: | chr24:30428030-30427886 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 80, 97 |
Show alignments to all cow chromosomes.