Cow genome map
| Conread name: | Ova1-OVRM10092F12 |
| Conread position: | 135-339 |
| Cow position: | chr27:9692144-9691944 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 33, 62 |
| Conread position: | 135-393 |
| Cow position: | chr27:23662720-23662441 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 33, 157 |
| Conread position: | 135-453 |
| Cow position: | chr27:29019861-29019523 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 155 |
| Conread position: | 164-453 |
| Cow position: | chr27:11762791-11762516 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 12, 54 |
| Conread position: | 194-715 |
| Cow position: | chr27:8942714-8942208 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 17 |
| Conread position: | 198-403 |
| Cow position: | chr27:6159954-6160155 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 150, 92 |
| Conread position: | 201-419 |
| Cow position: | chr27:20591954-20592173 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 11, 73 |
| Conread position: | 201-454 |
| Cow position: | chr27:11416423-11416667 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 192 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 223, 70 |
| Conread position: | 201-469 |
| Cow position: | chr27:14902678-14902410 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 38, 67 |
| Conread position: | 201-637 |
| Cow position: | chr27:25471118-25471570 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 7 |
| Conread position: | 202-452 |
| Cow position: | chr27:1183902-1183654 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 14, 67 |
| Conread position: | 202-600 |
| Cow position: | chr27:22171276-22171666 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 73 |
| Conread position: | 202-717 |
| Cow position: | chr27:30676886-30677405 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 9 |
| Conread position: | 203-436 |
| Cow position: | chr27:19647964-19647738 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 9, 65 |
| Conread position: | 203-451 |
| Cow position: | chr27:2592525-2592762 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 154, 72 |
| Conread position: | 203-453 |
| Cow position: | chr27:27632628-27632386 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 135, 14 |
| Conread position: | 203-695 |
| Cow position: | chr27:26595396-26595900 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 238 |
| Conread position: | 203-710 |
| Cow position: | chr27:4672995-4673493 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 67 |
| Conread position: | 203-719 |
| Cow position: | chr27:22418788-22418282 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 16 |
| Conread position: | 204-365 |
| Cow position: | chr27:10086704-10086546 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 144, 7 |
| Conread position: | 204-397 |
| Cow position: | chr27:23600246-23600433 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 97, 13 |
| Conread position: | 204-451 |
| Cow position: | chr27:6620123-6620367 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 191 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 146, 68 |
| Conread position: | 204-454 |
| Cow position: | chr27:15200679-15200921 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 144, 53 |
| Conread position: | 204-470 |
| Cow position: | chr27:27389039-27388788 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 204-482 |
| Cow position: | chr27:26492723-26492448 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 58 |
| Conread position: | 204-700 |
| Cow position: | chr27:17472790-17473289 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 11 |
| Conread position: | 205-451 |
| Cow position: | chr27:4812899-4812656 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 143, 6 |
| Conread position: | 205-453 |
| Cow position: | chr27:8048762-8048516 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 92, 7 |
| Conread position: | 205-494 |
| Cow position: | chr27:6550436-6550715 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 152, 56 |
| Conread position: | 205-578 |
| Cow position: | chr27:26398279-26397921 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 256 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 133, 59 |
| Conread position: | 205-718 |
| Cow position: | chr27:1353566-1354083 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 70 |
| Conread position: | 205-719 |
| Cow position: | chr27:8430459-8429934 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 66 |
| Conread position: | 206-698 |
| Cow position: | chr27:27737946-27737463 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 89 |
| Conread position: | 208-345 |
| Cow position: | chr27:14874619-14874753 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 81, 63 |
| Conread position: | 211-419 |
| Cow position: | chr27:27554699-27554497 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 17, 65 |
| Conread position: | 211-427 |
| Cow position: | chr27:6037108-6037319 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 169 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 146, 61 |
| Conread position: | 211-464 |
| Cow position: | chr27:13005824-13006068 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 195 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 17, 61 |
| Conread position: | 211-467 |
| Cow position: | chr27:26441076-26440821 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 60 |
| Conread position: | 211-686 |
| Cow position: | chr27:15319437-15319903 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 13 |
| Conread position: | 211-719 |
| Cow position: | chr27:23455170-23454656 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 64 |
| Conread position: | 212-368 |
| Cow position: | chr27:18948611-18948457 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 8, 62 |
| Conread position: | 212-447 |
| Cow position: | chr27:27641018-27640775 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 11, 65 |
| Conread position: | 212-470 |
| Cow position: | chr27:10979850-10980104 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 136, 16 |
| Conread position: | 212-530 |
| Cow position: | chr27:26424600-26424289 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 230 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 136, 60 |
| Conread position: | 212-619 |
| Cow position: | chr27:26299823-26300228 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 18 |
| Conread position: | 212-691 |
| Cow position: | chr27:26224287-26223802 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 63 |
| Conread position: | 212-718 |
| Cow position: | chr27:19388000-19388512 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 22 |
| Conread position: | 213-419 |
| Cow position: | chr27:14937440-14937239 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 167 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 40, 61 |
| Conread position: | 213-423 |
| Cow position: | chr27:23659349-23659147 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 144, 18 |
| Conread position: | 213-445 |
| Cow position: | chr27:464944-465168 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 205, 58 |
| Conread position: | 213-481 |
| Cow position: | chr27:27234009-27234271 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 123, 75 |
| Conread position: | 213-660 |
| Cow position: | chr27:490884-491335 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 17 |
| Conread position: | 213-719 |
| Cow position: | chr27:22330684-22330172 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 59 |
| Conread position: | 213-719 |
| Cow position: | chr27:23452446-23452957 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 286 |
| Conread position: | 213-719 |
| Cow position: | chr27:30417666-30418146 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 38 |
| Conread position: | 213-719 |
| Cow position: | chr27:30560901-30561414 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 56 |
| Conread position: | 217-433 |
| Cow position: | chr27:1142038-1141832 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 206, 33 |
| Conread position: | 217-512 |
| Cow position: | chr27:16580612-16580900 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 54 |
| Conread position: | 217-642 |
| Cow position: | chr27:6454202-6454630 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 51 |
| Conread position: | 218-412 |
| Cow position: | chr27:27550750-27550565 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 140, 57 |
| Conread position: | 218-445 |
| Cow position: | chr27:22498549-22498768 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 185, 51 |
| Conread position: | 218-457 |
| Cow position: | chr27:23554338-23554096 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 75, 54 |
| Conread position: | 219-445 |
| Cow position: | chr27:19637636-19637849 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 109, 39 |
| Conread position: | 220-432 |
| Cow position: | chr27:20354578-20354782 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 68, 49 |
| Conread position: | 220-453 |
| Cow position: | chr27:12596759-12596980 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 227, 49 |
| Conread position: | 220-642 |
| Cow position: | chr27:21978144-21977727 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 5 |
| Conread position: | 220-719 |
| Cow position: | chr27:13875724-13876212 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 56 |
| Conread position: | 221-418 |
| Cow position: | chr27:6038591-6038779 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 222-447 |
| Cow position: | chr27:22771747-22771975 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 80, 57 |
| Conread position: | 225-642 |
| Cow position: | chr27:26807564-26807150 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 132, 41 |
| Conread position: | 230-717 |
| Cow position: | chr27:815370-815850 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 46 |
| Conread position: | 233-590 |
| Cow position: | chr27:20510201-20510554 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 262 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 198, 31 |
| Conread position: | 236-443 |
| Cow position: | chr27:706961-707160 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 121, 39 |
| Conread position: | 236-557 |
| Cow position: | chr27:26428123-26427800 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 39 |
| Conread position: | 268-494 |
| Cow position: | chr27:2957438-2957668 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 60, 184 |
| Conread position: | 275-454 |
| Cow position: | chr27:16493614-16493779 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 45, 99 |
| Conread position: | 275-565 |
| Cow position: | chr27:25982666-25982381 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 218 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 75, 151 |
Show alignments to all cow chromosomes.