Cow genome map
| Conread name: | Ova1-OVRM10092F12 |
| Conread position: | 88-581 |
| Cow position: | chr29:28868725-28868233 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 324 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 121, 60 |
| Conread position: | 181-606 |
| Cow position: | chr29:11071696-11072113 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 92 |
| Conread position: | 194-454 |
| Cow position: | chr29:41530834-41530581 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 135, 78 |
| Conread position: | 195-350 |
| Cow position: | chr29:7393086-7392935 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 198-428 |
| Cow position: | chr29:11915802-11915573 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 98, 20 |
| Conread position: | 201-362 |
| Cow position: | chr29:456809-456972 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 104, 11 |
| Conread position: | 201-368 |
| Cow position: | chr29:38992837-38992996 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 201-398 |
| Cow position: | chr29:22778196-22778395 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 14, 75 |
| Conread position: | 201-439 |
| Cow position: | chr29:30544889-30545116 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 156, 16 |
| Conread position: | 201-450 |
| Cow position: | chr29:41747427-41747179 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 15, 81 |
| Conread position: | 201-453 |
| Cow position: | chr29:26129479-26129231 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 148, 8 |
| Conread position: | 201-490 |
| Cow position: | chr29:4625017-4625298 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 156, 78 |
| Conread position: | 201-520 |
| Cow position: | chr29:7407909-7408225 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 16 |
| Conread position: | 201-587 |
| Cow position: | chr29:12451357-12450980 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 72 |
| Conread position: | 201-715 |
| Cow position: | chr29:18072915-18072400 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 35 |
| Conread position: | 202-422 |
| Cow position: | chr29:22714745-22714965 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 146, 67 |
| Conread position: | 202-453 |
| Cow position: | chr29:23743075-23743305 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 155, 60 |
| Conread position: | 203-451 |
| Cow position: | chr29:356298-356060 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 11, 65 |
| Conread position: | 203-490 |
| Cow position: | chr29:14112355-14112070 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 55 |
| Conread position: | 203-494 |
| Cow position: | chr29:10456577-10456861 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 13, 70 |
| Conread position: | 203-700 |
| Cow position: | chr29:12901127-12901614 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 70 |
| Conread position: | 203-719 |
| Cow position: | chr29:13554113-13553609 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 68 |
| Conread position: | 203-719 |
| Cow position: | chr29:17109945-17109456 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 33 |
| Conread position: | 204-453 |
| Cow position: | chr29:21925188-21924942 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 69 |
| Conread position: | 205-449 |
| Cow position: | chr29:29769375-29769610 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 205-557 |
| Cow position: | chr29:32655457-32655813 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 239, 82 |
| Conread position: | 205-719 |
| Cow position: | chr29:11684983-11684469 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 20 |
| Conread position: | 205-719 |
| Cow position: | chr29:19428635-19428135 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 348, 74 |
| Conread position: | 205-719 |
| Cow position: | chr29:19762247-19761740 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 49 |
| Conread position: | 206-719 |
| Cow position: | chr29:21534702-21535223 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 11 |
| Conread position: | 207-461 |
| Cow position: | chr29:39111337-39111584 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 10, 66 |
| Conread position: | 207-605 |
| Cow position: | chr29:20626548-20626169 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 10 |
| Conread position: | 209-441 |
| Cow position: | chr29:22613398-22613179 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 211-394 |
| Cow position: | chr29:709150-709332 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 143, 61 |
| Conread position: | 211-441 |
| Cow position: | chr29:44135490-44135717 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 137, 64 |
| Conread position: | 211-448 |
| Cow position: | chr29:4194147-4194384 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 156, 72 |
| Conread position: | 211-507 |
| Cow position: | chr29:13372636-13372344 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 9, 49 |
| Conread position: | 212-451 |
| Cow position: | chr29:34736499-34736732 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 145, 60 |
| Conread position: | 212-557 |
| Cow position: | chr29:34609751-34610084 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 41 |
| Conread position: | 212-719 |
| Cow position: | chr29:4874919-4875437 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 360 |
| Conread position: | 212-719 |
| Cow position: | chr29:24952657-24952133 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 54 |
| Conread position: | 214-557 |
| Cow position: | chr29:26615755-26616109 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 58 |
| Conread position: | 214-688 |
| Cow position: | chr29:44232984-44233439 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 11 |
| Conread position: | 217-396 |
| Cow position: | chr29:10188018-10187848 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 129, 46 |
| Conread position: | 217-419 |
| Cow position: | chr29:42886351-42886146 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 58 |
| Conread position: | 217-432 |
| Cow position: | chr29:18735677-18735890 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 85, 47 |
| Conread position: | 217-544 |
| Cow position: | chr29:19508916-19508588 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 54 |
| Conread position: | 217-716 |
| Cow position: | chr29:18338577-18339065 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 71 |
| Conread position: | 217-719 |
| Cow position: | chr29:650242-649731 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 11 |
| Conread position: | 217-719 |
| Cow position: | chr29:37719871-37719378 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 34 |
| Conread position: | 218-350 |
| Cow position: | chr29:16055167-16055299 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 218-418 |
| Cow position: | chr29:19253857-19254056 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 84, 61 |
| Conread position: | 218-422 |
| Cow position: | chr29:4520298-4520098 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 139, 57 |
| Conread position: | 218-443 |
| Cow position: | chr29:11787759-11787533 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 132, 53 |
| Conread position: | 218-445 |
| Cow position: | chr29:19389450-19389226 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 84, 57 |
| Conread position: | 218-451 |
| Cow position: | chr29:22175650-22175427 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 139, 54 |
| Conread position: | 218-453 |
| Cow position: | chr29:12783993-12784224 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 139, 50 |
| Conread position: | 218-454 |
| Cow position: | chr29:19338950-19338710 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 86, 61 |
| Conread position: | 218-514 |
| Cow position: | chr29:19907318-19907031 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 53 |
| Conread position: | 218-613 |
| Cow position: | chr29:6636062-6635678 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 219-453 |
| Cow position: | chr29:36404784-36404553 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 56 |
| Conread position: | 224-401 |
| Cow position: | chr29:10475368-10475195 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 132, 38 |
| Conread position: | 224-455 |
| Cow position: | chr29:13634344-13634570 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 124, 49 |
| Conread position: | 224-696 |
| Cow position: | chr29:87059-87521 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 51 |
| Conread position: | 224-719 |
| Cow position: | chr29:2744315-2744802 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 45 |
| Conread position: | 225-419 |
| Cow position: | chr29:34773778-34773962 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 225-665 |
| Cow position: | chr29:12004805-12005243 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 112 |
| Conread position: | 227-453 |
| Cow position: | chr29:12680112-12679886 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 118, 40 |
| Conread position: | 230-357 |
| Cow position: | chr29:35442510-35442633 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 233-719 |
| Cow position: | chr29:1612627-1613108 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 38 |
| Conread position: | 252-497 |
| Cow position: | chr29:798521-798767 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 41, 75 |
| Conread position: | 268-465 |
| Cow position: | chr29:42364096-42364294 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 69, 150 |
| Conread position: | 268-656 |
| Cow position: | chr29:17186-17561 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 200 |
Show alignments to all cow chromosomes.