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Cow genome map

           
Conread name:
           
Ova1-OVRM10096A12
        

               
Conread position:
               
1-264
               

               
Cow position:
               
chr21:20153095-20152810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr21:25345000-25344659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
192, 91
               

               
Conread position:
               
5-293
               

               
Cow position:
               
chr21:10114199-10114493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
84, 44
               

               
Conread position:
               
5-342
               

               
Cow position:
               
chr21:42384643-42384292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
83, 101
               

               
Conread position:
               
5-347
               

               
Cow position:
               
chr21:27863378-27863737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
83, 292
               

               
Conread position:
               
5-365
               

               
Cow position:
               
chr21:49699905-49700273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 98
               

               
Conread position:
               
6-230
               

               
Cow position:
               
chr21:36789929-36789703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
82, 167
               

               
Conread position:
               
6-234
               

               
Cow position:
               
chr21:957806-957574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
82, 41
               

               
Conread position:
               
6-239
               

               
Cow position:
               
chr21:2260232-2260461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
82, 20
               

               
Conread position:
               
6-275
               

               
Cow position:
               
chr21:28244604-28244327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
82, 60
               

               
Conread position:
               
6-297
               

               
Cow position:
               
chr21:10001209-10000912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
27, 34
               

               
Conread position:
               
6-307
               

               
Cow position:
               
chr21:8235428-8235722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
82, 36
               

               
Conread position:
               
6-309
               

               
Cow position:
               
chr21:17184051-17183741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
81, 41
               

               
Conread position:
               
6-318
               

               
Cow position:
               
chr21:14452368-14452041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
82, 117
               

               
Conread position:
               
6-322
               

               
Cow position:
               
chr21:3763609-3763930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
110, 7
               

               
Conread position:
               
6-322
               

               
Cow position:
               
chr21:10264167-10263850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
82, 108
               

               
Conread position:
               
6-326
               

               
Cow position:
               
chr21:32339606-32339932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
130, 85
               

               
Conread position:
               
6-330
               

               
Cow position:
               
chr21:9311186-9310842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
52, 107
               

               
Conread position:
               
6-333
               

               
Cow position:
               
chr21:33853-33517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
130, 84
               

               
Conread position:
               
6-333
               

               
Cow position:
               
chr21:23587016-23586670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 287
               

               
Conread position:
               
6-333
               

               
Cow position:
               
chr21:41621259-41620915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
82, 108
               

               
Conread position:
               
6-340
               

               
Cow position:
               
chr21:45473624-45473969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
82, 100
               

               
Conread position:
               
6-342
               

               
Cow position:
               
chr21:15584285-15584616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
82, 183
               

               
Conread position:
               
6-342
               

               
Cow position:
               
chr21:27341461-27341810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
61, 37
               

               
Conread position:
               
6-342
               

               
Cow position:
               
chr21:30231560-30231916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
87, 134
               

               
Conread position:
               
6-347
               

               
Cow position:
               
chr21:34654207-34653866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
82, 61
               

               
Conread position:
               
6-348
               

               
Cow position:
               
chr21:20160810-20160465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
82, 100
               

               
Conread position:
               
6-348
               

               
Cow position:
               
chr21:27123987-27124347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
81, 183
               

               
Conread position:
               
6-351
               

               
Cow position:
               
chr21:396001-395656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 48
               

               
Conread position:
               
6-351
               

               
Cow position:
               
chr21:10151939-10151573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
83, 108
               

               
Conread position:
               
6-351
               

               
Cow position:
               
chr21:28733779-28734134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
82, 58
               

               
Conread position:
               
6-351
               

               
Cow position:
               
chr21:46912679-46912322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
64, 120
               

               
Conread position:
               
6-353
               

               
Cow position:
               
chr21:45971040-45971382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 57
               

               
Conread position:
               
6-380
               

               
Cow position:
               
chr21:9416385-9415990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
7-189
               

               
Cow position:
               
chr21:28919390-28919576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
7-191
               

               
Cow position:
               
chr21:47363601-47363793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
7-194
               

               
Cow position:
               
chr21:868791-868982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
7-208
               

               
Cow position:
               
chr21:40266254-40266049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
81, 40
               

               
Conread position:
               
7-249
               

               
Cow position:
               
chr21:30835496-30835251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
81, 54
               

               
Conread position:
               
7-310
               

               
Cow position:
               
chr21:9990643-9990333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
196, 131
               

               
Conread position:
               
7-318
               

               
Cow position:
               
chr21:47763984-47764301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
81, 97
               

               
Conread position:
               
7-320
               

               
Cow position:
               
chr21:32559232-32559545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
129, 85
               

               
Conread position:
               
7-324
               

               
Cow position:
               
chr21:42135483-42135819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
81, 291
               

               
Conread position:
               
7-326
               

               
Cow position:
               
chr21:13738686-13738374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
81, 35
               

               
Conread position:
               
7-333
               

               
Cow position:
               
chr21:1059208-1058873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
95, 37
               

               
Conread position:
               
7-333
               

               
Cow position:
               
chr21:40134290-40133951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
48, 40
               

               
Conread position:
               
7-346
               

               
Cow position:
               
chr21:30592176-30592515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
86, 34
               

               
Conread position:
               
7-348
               

               
Cow position:
               
chr21:724752-725109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
81, 38
               

               
Conread position:
               
7-348
               

               
Cow position:
               
chr21:3585235-3585575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
83, 97
               

               
Conread position:
               
7-351
               

               
Cow position:
               
chr21:641720-641362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
81, 264
               

               
Conread position:
               
7-351
               

               
Cow position:
               
chr21:14760698-14760362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
129, 40
               

               
Conread position:
               
7-351
               

               
Cow position:
               
chr21:23822288-23821946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
196, 73
               

               
Conread position:
               
7-351
               

               
Cow position:
               
chr21:27229661-27230014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
81, 47
               

               
Conread position:
               
7-351
               

               
Cow position:
               
chr21:29069193-29069550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
43, 286
               

               
Conread position:
               
7-351
               

               
Cow position:
               
chr21:33982677-33983032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
7-351
               

               
Cow position:
               
chr21:34010263-34010612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
94, 64
               

               
Conread position:
               
7-351
               

               
Cow position:
               
chr21:38900906-38900551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 9
               

               
Conread position:
               
7-363
               

               
Cow position:
               
chr21:29485111-29484751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 43
               

               
Conread position:
               
7-365
               

               
Cow position:
               
chr21:643457-643100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 107
               

               
Conread position:
               
7-384
               

               
Cow position:
               
chr21:4399936-4399544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
97, 85
               

               
Conread position:
               
7-384
               

               
Cow position:
               
chr21:44825753-44826131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
28, 76
               

               
Conread position:
               
7-387
               

               
Cow position:
               
chr21:36795736-36795341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
58, 40
               

               
Conread position:
               
7-405
               

               
Cow position:
               
chr21:46264303-46263903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
81, 60
               

               
Conread position:
               
8-189
               

               
Cow position:
               
chr21:9697948-9698135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
8-234
               

               
Cow position:
               
chr21:18155434-18155668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
103, 88
               

               
Conread position:
               
8-248
               

               
Cow position:
               
chr21:17009113-17008867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
80, 107
               

               
Conread position:
               
8-276
               

               
Cow position:
               
chr21:13840458-13840173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
80, 15
               

               
Conread position:
               
8-307
               

               
Cow position:
               
chr21:27145860-27146172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
128, 97
               

               
Conread position:
               
8-311
               

               
Cow position:
               
chr21:13488659-13488337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
81, 110
               

               
Conread position:
               
8-351
               

               
Cow position:
               
chr21:44113999-44114349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
84, 15
               

               
Conread position:
               
8-368
               

               
Cow position:
               
chr21:4904835-4905205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
80, 102
               

               
Conread position:
               
8-369
               

               
Cow position:
               
chr21:7564175-7564563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
80, 296
               

               
Conread position:
               
9-197
               

               
Cow position:
               
chr21:7394511-7394321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
79, 34
               

               
Conread position:
               
9-326
               

               
Cow position:
               
chr21:47729890-47730216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
79, 290
               

               
Conread position:
               
10-254
               

               
Cow position:
               
chr21:10561453-10561703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
42, 36
               

               
Conread position:
               
10-262
               

               
Cow position:
               
chr21:12461837-12462106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
10-276
               

               
Cow position:
               
chr21:26245044-26244782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
78, 97
               

               
Conread position:
               
10-319
               

               
Cow position:
               
chr21:13365472-13365151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
78, 37
               

               
Conread position:
               
10-338
               

               
Cow position:
               
chr21:43357126-43357468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
40, 36
               

               
Conread position:
               
10-351
               

               
Cow position:
               
chr21:11644836-11645189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
78, 70
               

               
Conread position:
               
10-351
               

               
Cow position:
               
chr21:16187677-16188018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
78, 277
               

               
Conread position:
               
10-351
               

               
Cow position:
               
chr21:44251713-44252050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
193, 86
               

               
Conread position:
               
10-387
               

               
Cow position:
               
chr21:33997097-33997484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
83, 276
               

               
Conread position:
               
11-328
               

               
Cow position:
               
chr21:4281746-4282067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
77, 96
               

               
Conread position:
               
13-195
               

               
Cow position:
               
chr21:40432572-40432391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
75, 91
               

               
Conread position:
               
13-276
               

               
Cow position:
               
chr21:24642647-24642369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
75, 26
               

               
Conread position:
               
13-325
               

               
Cow position:
               
chr21:38449322-38449648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
75, 25
               

               
Conread position:
               
13-330
               

               
Cow position:
               
chr21:44515391-44515073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
75, 97
               

               
Conread position:
               
13-331
               

               
Cow position:
               
chr21:47066774-47067089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
28, 38
               

               
Conread position:
               
13-332
               

               
Cow position:
               
chr21:45355960-45355633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
37, 33
               

               
Conread position:
               
13-333
               

               
Cow position:
               
chr21:6051630-6051302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
122, 83
               

               
Conread position:
               
13-340
               

               
Cow position:
               
chr21:29014784-29015103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
80, 36
               

               
Conread position:
               
13-351
               

               
Cow position:
               
chr21:28442859-28442517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
189, 78
               

               
Conread position:
               
13-351
               

               
Cow position:
               
chr21:34390848-34391192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 96
               

               
Conread position:
               
13-351
               

               
Cow position:
               
chr21:36162832-36163185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
75, 84
               

               
Conread position:
               
13-354
               

               
Cow position:
               
chr21:28626364-28626016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
75, 36
               

               
Conread position:
               
13-369
               

               
Cow position:
               
chr21:12154260-12153892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
51, 95
               

               
Conread position:
               
16-323
               

               
Cow position:
               
chr21:1591678-1591357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
72, 278
               

               
Conread position:
               
16-348
               

               
Cow position:
               
chr21:17723138-17722805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 25
               

               
Conread position:
               
16-351
               

               
Cow position:
               
chr21:13127975-13128316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
60, 34
               

               
Conread position:
               
17-197
               

               
Cow position:
               
chr21:1511412-1511231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
72, 27
               

               
Conread position:
               
17-231
               

               
Cow position:
               
chr21:38664762-38664543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
71, 138
               

               
Conread position:
               
25-235
               

               
Cow position:
               
chr21:33359926-33360136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
63, 24
               

               
Conread position:
               
25-333
               

               
Cow position:
               
chr21:22861117-22860798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
63, 266
               

               
Conread position:
               
25-351
               

               
Cow position:
               
chr21:41878586-41878254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
65, 89
               

               
Conread position:
               
27-217
               

               
Cow position:
               
chr21:37014293-37014484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
61, 83
               

               
Conread position:
               
30-230
               

               
Cow position:
               
chr21:29978650-29978850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
58, 83
               

               
Conread position:
               
30-321
               

               
Cow position:
               
chr21:45151519-45151815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
163, 66
               

               
Conread position:
               
30-362
               

               
Cow position:
               
chr21:3818319-3817987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
106, 66
               

               
Conread position:
               
34-328
               

               
Cow position:
               
chr21:36756706-36756408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
54, 182
               

               
Conread position:
               
36-351
               

               
Cow position:
               
chr21:23192408-23192740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
52, 79
               

               
Conread position:
               
37-387
               

               
Cow position:
               
chr21:4795329-4794962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
52, 43
               

               
Conread position:
               
38-235
               

               
Cow position:
               
chr21:30236722-30236916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
98, 50
               

               
Conread position:
               
48-273
               

               
Cow position:
               
chr21:18041755-18041989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
40, 74
               

               
Conread position:
               
48-351
               

               
Cow position:
               
chr21:5344758-5344439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 61
               

               
Conread position:
               
48-460
               

               
Cow position:
               
chr21:33263936-33263522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
40, 93
               

               
Conread position:
               
49-231
               

               
Cow position:
               
chr21:5985227-5985413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
91, 40
               

               
Conread position:
               
49-339
               

               
Cow position:
               
chr21:33563099-33562809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
44, 60
               

               
Conread position:
               
49-348
               

               
Cow position:
               
chr21:10727368-10727062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
39, 60
               

               
Conread position:
               
49-365
               

               
Cow position:
               
chr21:39888658-39888981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
49-376
               

               
Cow position:
               
chr21:17175238-17174894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 57
               

               
Conread position:
               
54-333
               

               
Cow position:
               
chr21:12960813-12961103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 9
               

               
Conread position:
               
60-347
               

               
Cow position:
               
chr21:31676579-31676284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
30, 231
               

               
Conread position:
               
61-352
               

               
Cow position:
               
chr21:36793974-36793659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
62-191
               

               
Cow position:
               
chr21:7391199-7391330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 42
               

               
Conread position:
               
62-332
               

               
Cow position:
               
chr21:5137409-5137695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
76, 50
               

               
Conread position:
               
62-342
               

               
Cow position:
               
chr21:27743827-27743525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
26, 221
               

               
Conread position:
               
63-306
               

               
Cow position:
               
chr21:18790485-18790733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
25, 14
               

               
Conread position:
               
63-324
               

               
Cow position:
               
chr21:21077403-21077134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
30, 223
               

               
Conread position:
               
63-347
               

               
Cow position:
               
chr21:10514883-10514594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
25, 60
               

               
Conread position:
               
63-351
               

               
Cow position:
               
chr21:32574798-32574509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
26, 65
               

               
Conread position:
               
63-351
               

               
Cow position:
               
chr21:47802182-47802484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 66
               

               
Conread position:
               
64-351
               

               
Cow position:
               
chr21:45867008-45866714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
24, 11
               

               
Conread position:
               
67-348
               

               
Cow position:
               
chr21:30990205-30990487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
21, 54
               

               
Conread position:
               
67-353
               

               
Cow position:
               
chr21:9862569-9862845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 96
               

               
Conread position:
               
67-395
               

               
Cow position:
               
chr21:28882210-28881882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
21, 144
               

               
Conread position:
               
69-369
               

               
Cow position:
               
chr21:40058872-40058565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
55, 27
               

               
Conread position:
               
73-351
               

               
Cow position:
               
chr21:42913676-42913968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
20, 117
               

               
Conread position:
               
77-302
               

               
Cow position:
               
chr21:9873016-9872794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
58, 20
               

               
Conread position:
               
77-369
               

               
Cow position:
               
chr21:21216085-21216382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
57, 15
               

               
Conread position:
               
86-326
               

               
Cow position:
               
chr21:33727410-33727658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
15, 116
               

               
Conread position:
               
86-342
               

               
Cow position:
               
chr21:12617192-12616926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
29, 88
               

               
Conread position:
               
92-316
               

               
Cow position:
               
chr21:42024169-42023938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
19, 11
               

               
Conread position:
               
94-348
               

               
Cow position:
               
chr21:42190129-42190386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
42, 188
               

               
Conread position:
               
96-351
               

               
Cow position:
               
chr21:26647967-26648226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
83, 42
               

               
Conread position:
               
97-369
               

               
Cow position:
               
chr21:36763091-36762812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
39, 20
               

               
Conread position:
               
98-333
               

               
Cow position:
               
chr21:30848907-30849143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
38, 10
               

               
Conread position:
               
99-351
               

               
Cow position:
               
chr21:17412258-17412514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
37, 74
               

               
Conread position:
               
103-351
               

               
Cow position:
               
chr21:18932522-18932270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
32, 51
               

               
Conread position:
               
106-351
               

               
Cow position:
               
chr21:20925472-20925728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
20, 182
               

               
Conread position:
               
106-351
               

               
Cow position:
               
chr21:39401628-39401378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
30, 184
               

               
Conread position:
               
106-362
               

               
Cow position:
               
chr21:27521298-27521554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
25, 176
               

               
Conread position:
               
108-330
               

               
Cow position:
               
chr21:3381051-3381282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
28, 181
               

               
Conread position:
               
108-346
               

               
Cow position:
               
chr21:48484415-48484657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
28, 180
               

               
Conread position:
               
108-351
               

               
Cow position:
               
chr21:23801096-23801343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
109-319
               

               
Cow position:
               
chr21:18495000-18494776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
27, 186
               

               
Conread position:
               
109-363
               

               
Cow position:
               
chr21:2927171-2927436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
27, 186
               

               
Conread position:
               
112-342
               

               
Cow position:
               
chr21:15867337-15867099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
21, 95
               

               
Conread position:
               
112-351
               

               
Cow position:
               
chr21:3236551-3236310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
7, 77
               

               
Conread position:
               
112-364
               

               
Cow position:
               
chr21:37361448-37361712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
24, 127
               

               
Conread position:
               
114-323
               

               
Cow position:
               
chr21:31277846-31277627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
22, 171
               

               
Conread position:
               
114-324
               

               
Cow position:
               
chr21:26829232-26829436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
22, 88
               

               
Conread position:
               
114-351
               

               
Cow position:
               
chr21:4428706-4428466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
74, 90
               

               
Conread position:
               
117-347
               

               
Cow position:
               
chr21:18934942-18934705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
13, 83
               

               
Conread position:
               
118-330
               

               
Cow position:
               
chr21:32237317-32237096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
18, 100
               

               
Conread position:
               
121-342
               

               
Cow position:
               
chr21:28512548-28512321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
15, 74
               

               
Conread position:
               
132-316
               

               
Cow position:
               
chr21:28027812-28027616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
54, 159
               

               
Conread position:
               
132-342
               

               
Cow position:
               
chr21:48263128-48262920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
22, 104
               

               
Conread position:
               
133-328
               

               
Cow position:
               
chr21:13585071-13585257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
71, 25
               

               
Conread position:
               
133-332
               

               
Cow position:
               
chr21:34835430-34835626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
97, 87
               

               
Conread position:
               
133-342
               

               
Cow position:
               
chr21:13303823-13303606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
133-345
               

               
Cow position:
               
chr21:1464235-1464017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
56, 157
               

               
Conread position:
               
133-348
               

               
Cow position:
               
chr21:41957172-41957393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
69, 152
               

               
Conread position:
               
133-351
               

               
Cow position:
               
chr21:363654-363433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
89, 112
               

               
Conread position:
               
133-351
               

               
Cow position:
               
chr21:4189840-4189612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
60, 156
               

               
Conread position:
               
133-351
               

               
Cow position:
               
chr21:5636714-5636943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
70, 154
               

               
Conread position:
               
133-351
               

               
Cow position:
               
chr21:10967238-10967011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
59, 156
               

               
Conread position:
               
133-351
               

               
Cow position:
               
chr21:17416757-17416984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
65, 153
               

               
Conread position:
               
133-351
               

               
Cow position:
               
chr21:21967476-21967260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
106, 37
               

               
Conread position:
               
133-351
               

               
Cow position:
               
chr21:23683552-23683328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
70, 152
               

               
Conread position:
               
133-351
               

               
Cow position:
               
chr21:33419719-33419937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
58, 13
               

               
Conread position:
               
133-363
               

               
Cow position:
               
chr21:8618281-8618041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
57, 157
               

               
Conread position:
               
135-311
               

               
Cow position:
               
chr21:46829268-46829451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
61, 146
               

               
Conread position:
               
136-320
               

               
Cow position:
               
chr21:40065313-40065506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 95
               

               
Conread position:
               
136-351
               

               
Cow position:
               
chr21:42348673-42348900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
67, 156
               

               
Conread position:
               
139-322
               

               
Cow position:
               
chr21:13163889-13163700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
54, 149
               

               
Conread position:
               
139-353
               

               
Cow position:
               
chr21:35897635-35897844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
64, 11
               

               
Conread position:
               
140-351
               

               
Cow position:
               
chr21:13763618-13763403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
88, 146
               

               
Conread position:
               
148-352
               

               
Cow position:
               
chr21:24797676-24797472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
55, 134
               

               
Conread position:
               
193-348
               

               
Cow position:
               
chr21:29954493-29954646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
11, 85
               

               
Conread position:
               
362-502
               

               
Cow position:
               
chr21:23861913-23861773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
367-507
               

               
Cow position:
               
chr21:27565983-27565843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
91, 48
               

               
Conread position:
               
368-501
               

               
Cow position:
               
chr21:40271093-40271226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
368-502
               

               
Cow position:
               
chr21:2883160-2883294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
48, 121
               

               
Conread position:
               
368-502
               

               
Cow position:
               
chr21:33252093-33251961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
368-507
               

               
Cow position:
               
chr21:146510-146372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
368-507
               

               
Cow position:
               
chr21:359949-359816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
368-507
               

               
Cow position:
               
chr21:3779356-3779215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
368-507
               

               
Cow position:
               
chr21:7266944-7267089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
368-507
               

               
Cow position:
               
chr21:10850664-10850527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
368-507
               

               
Cow position:
               
chr21:27282974-27282836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
368-507
               

               
Cow position:
               
chr21:28735817-28735678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
368-507
               

               
Cow position:
               
chr21:31559072-31559206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
368-507
               

               
Cow position:
               
chr21:35144344-35144206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
368-507
               

               
Cow position:
               
chr21:48116688-48116550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
368-519
               

               
Cow position:
               
chr21:21915274-21915122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
370-493
               

               
Cow position:
               
chr21:11506175-11506052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
370-500
               

               
Cow position:
               
chr21:2475962-2476092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
370-500
               

               
Cow position:
               
chr21:2511474-2511344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
370-500
               

               
Cow position:
               
chr21:6340145-6340015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
370-500
               

               
Cow position:
               
chr21:11406417-11406547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
370-500
               

               
Cow position:
               
chr21:11453077-11453207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
370-500
               

               
Cow position:
               
chr21:12055422-12055552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
370-500
               

               
Cow position:
               
chr21:26650620-26650490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
370-500
               

               
Cow position:
               
chr21:37046199-37046069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
371-477
               

               
Cow position:
               
chr21:9892517-9892411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
371-506
               

               
Cow position:
               
chr21:467470-467339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
371-507
               

               
Cow position:
               
chr21:10567253-10567118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
371-507
               

               
Cow position:
               
chr21:30562387-30562252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
372-486
               

               
Cow position:
               
chr21:46916164-46916050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
377-507
               

               
Cow position:
               
chr21:2416791-2416662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
390-507
               

               
Cow position:
               
chr21:2502456-2502339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.