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Cow genome map

           
Conread name:
           
Ova1-OVRM10096A12
        

               
Conread position:
               
1-234
               

               
Cow position:
               
chr9:61302954-61303194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
92, 106
               

               
Conread position:
               
5-333
               

               
Cow position:
               
chr9:15215729-15215384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
83, 291
               

               
Conread position:
               
5-351
               

               
Cow position:
               
chr9:22152127-22151773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 58
               

               
Conread position:
               
6-211
               

               
Cow position:
               
chr9:26477175-26477384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
6-220
               

               
Cow position:
               
chr9:50543469-50543247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
6-222
               

               
Cow position:
               
chr9:9815372-9815594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
97, 71
               

               
Conread position:
               
6-234
               

               
Cow position:
               
chr9:6839952-6840198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
6-235
               

               
Cow position:
               
chr9:27279268-27279506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
82, 98
               

               
Conread position:
               
6-255
               

               
Cow position:
               
chr9:11123524-11123271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
83, 21
               

               
Conread position:
               
6-312
               

               
Cow position:
               
chr9:64559923-64559610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
45, 71
               

               
Conread position:
               
6-317
               

               
Cow position:
               
chr9:1751297-1751616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
85, 98
               

               
Conread position:
               
6-317
               

               
Cow position:
               
chr9:51566536-51566207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
82, 291
               

               
Conread position:
               
6-323
               

               
Cow position:
               
chr9:8288577-8288904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
83, 16
               

               
Conread position:
               
6-326
               

               
Cow position:
               
chr9:34468619-34468303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
82, 98
               

               
Conread position:
               
6-332
               

               
Cow position:
               
chr9:5327217-5327547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
83, 101
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr9:22443668-22443312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
82, 100
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr9:32371792-32371460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
82, 16
               

               
Conread position:
               
6-342
               

               
Cow position:
               
chr9:14796811-14796474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
174, 85
               

               
Conread position:
               
6-346
               

               
Cow position:
               
chr9:20322134-20321803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
82, 36
               

               
Conread position:
               
6-347
               

               
Cow position:
               
chr9:7409722-7410093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
52, 304
               

               
Conread position:
               
6-347
               

               
Cow position:
               
chr9:44915138-44914787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
88, 287
               

               
Conread position:
               
6-347
               

               
Cow position:
               
chr9:52407123-52407481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
84, 290
               

               
Conread position:
               
6-348
               

               
Cow position:
               
chr9:21888129-21888481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 55
               

               
Conread position:
               
6-351
               

               
Cow position:
               
chr9:5433591-5433946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 287
               

               
Conread position:
               
6-351
               

               
Cow position:
               
chr9:8534731-8534371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
82, 291
               

               
Conread position:
               
6-351
               

               
Cow position:
               
chr9:8998308-8998670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 39
               

               
Conread position:
               
6-351
               

               
Cow position:
               
chr9:19714039-19714385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 40
               

               
Conread position:
               
6-351
               

               
Cow position:
               
chr9:20815828-20816156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
82, 10
               

               
Conread position:
               
6-351
               

               
Cow position:
               
chr9:21460192-21459840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
83, 40
               

               
Conread position:
               
6-351
               

               
Cow position:
               
chr9:31346909-31347268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
45, 189
               

               
Conread position:
               
6-351
               

               
Cow position:
               
chr9:32676636-32676997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
82, 107
               

               
Conread position:
               
6-351
               

               
Cow position:
               
chr9:35375385-35375736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
82, 21
               

               
Conread position:
               
6-365
               

               
Cow position:
               
chr9:9443642-9443262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
82, 41
               

               
Conread position:
               
6-365
               

               
Cow position:
               
chr9:38961471-38961107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 54
               

               
Conread position:
               
7-191
               

               
Cow position:
               
chr9:34283913-34284094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
81, 100
               

               
Conread position:
               
7-223
               

               
Cow position:
               
chr9:11168690-11168910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 39
               

               
Conread position:
               
7-234
               

               
Cow position:
               
chr9:12910441-12910212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
81, 98
               

               
Conread position:
               
7-234
               

               
Cow position:
               
chr9:18217139-18216913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
81, 100
               

               
Conread position:
               
7-234
               

               
Cow position:
               
chr9:19493506-19493272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
7-240
               

               
Cow position:
               
chr9:28354477-28354715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
7-254
               

               
Cow position:
               
chr9:49416947-49417199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
44, 36
               

               
Conread position:
               
7-276
               

               
Cow position:
               
chr9:33119928-33119640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
7-297
               

               
Cow position:
               
chr9:50139245-50139548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
64, 100
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr9:34286759-34287062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
81, 193
               

               
Conread position:
               
7-309
               

               
Cow position:
               
chr9:51620405-51620708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
123, 40
               

               
Conread position:
               
7-328
               

               
Cow position:
               
chr9:24887166-24887487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
127, 83
               

               
Conread position:
               
7-329
               

               
Cow position:
               
chr9:17310602-17310269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
7-330
               

               
Cow position:
               
chr9:45141640-45141324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
81, 100
               

               
Conread position:
               
7-333
               

               
Cow position:
               
chr9:42446023-42445688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
83, 284
               

               
Conread position:
               
7-333
               

               
Cow position:
               
chr9:55084341-55084000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
82, 13
               

               
Conread position:
               
7-342
               

               
Cow position:
               
chr9:23388712-23388370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
82, 25
               

               
Conread position:
               
7-342
               

               
Cow position:
               
chr9:41679707-41680042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 97
               

               
Conread position:
               
7-347
               

               
Cow position:
               
chr9:35904785-35904440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
81, 97
               

               
Conread position:
               
7-351
               

               
Cow position:
               
chr9:4268022-4267678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
80, 99
               

               
Conread position:
               
7-351
               

               
Cow position:
               
chr9:5219212-5218865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
46, 166
               

               
Conread position:
               
7-351
               

               
Cow position:
               
chr9:9461697-9461342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
60, 39
               

               
Conread position:
               
7-351
               

               
Cow position:
               
chr9:43870935-43871287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 280
               

               
Conread position:
               
7-351
               

               
Cow position:
               
chr9:50081080-50080731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 99
               

               
Conread position:
               
7-351
               

               
Cow position:
               
chr9:59386809-59386465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
81, 106
               

               
Conread position:
               
7-351
               

               
Cow position:
               
chr9:62442250-62442596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
57, 19
               

               
Conread position:
               
7-352
               

               
Cow position:
               
chr9:44467379-44467033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
7-369
               

               
Cow position:
               
chr9:55075168-55074801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 47
               

               
Conread position:
               
8-188
               

               
Cow position:
               
chr9:1756184-1756001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
80, 103
               

               
Conread position:
               
8-223
               

               
Cow position:
               
chr9:8901266-8901044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
8-234
               

               
Cow position:
               
chr9:6338754-6338989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
8-342
               

               
Cow position:
               
chr9:29185176-29184828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 287
               

               
Conread position:
               
8-344
               

               
Cow position:
               
chr9:53258093-53257756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
57, 69
               

               
Conread position:
               
8-345
               

               
Cow position:
               
chr9:20681445-20681097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
114, 83
               

               
Conread position:
               
8-348
               

               
Cow position:
               
chr9:647738-648086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
80, 103
               

               
Conread position:
               
8-348
               

               
Cow position:
               
chr9:823921-824267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
81, 107
               

               
Conread position:
               
8-348
               

               
Cow position:
               
chr9:31077709-31077366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
81, 95
               

               
Conread position:
               
8-351
               

               
Cow position:
               
chr9:15805962-15805606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
80, 113
               

               
Conread position:
               
8-351
               

               
Cow position:
               
chr9:21030269-21030632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
80, 105
               

               
Conread position:
               
8-351
               

               
Cow position:
               
chr9:30402464-30402105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
80, 288
               

               
Conread position:
               
10-191
               

               
Cow position:
               
chr9:11304112-11303935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
78, 33
               

               
Conread position:
               
10-342
               

               
Cow position:
               
chr9:5162087-5161765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
83, 97
               

               
Conread position:
               
10-345
               

               
Cow position:
               
chr9:35167139-35167477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 93
               

               
Conread position:
               
10-349
               

               
Cow position:
               
chr9:62357565-62357218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
96, 36
               

               
Conread position:
               
11-336
               

               
Cow position:
               
chr9:54716638-54716326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
67, 27
               

               
Conread position:
               
12-348
               

               
Cow position:
               
chr9:36490934-36490583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
57, 203
               

               
Conread position:
               
13-234
               

               
Cow position:
               
chr9:17799591-17799818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 98
               

               
Conread position:
               
13-240
               

               
Cow position:
               
chr9:1972914-1973139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
75, 39
               

               
Conread position:
               
13-275
               

               
Cow position:
               
chr9:43757503-43757764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
44, 21
               

               
Conread position:
               
13-304
               

               
Cow position:
               
chr9:33597952-33598249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
76, 93
               

               
Conread position:
               
13-322
               

               
Cow position:
               
chr9:11319668-11319358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
83, 227
               

               
Conread position:
               
13-323
               

               
Cow position:
               
chr9:9823540-9823232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
100, 54
               

               
Conread position:
               
13-347
               

               
Cow position:
               
chr9:7634237-7634579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 102
               

               
Conread position:
               
13-351
               

               
Cow position:
               
chr9:5509690-5510039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 91
               

               
Conread position:
               
13-351
               

               
Cow position:
               
chr9:44921426-44921097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
75, 10
               

               
Conread position:
               
13-380
               

               
Cow position:
               
chr9:50606979-50606608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
33, 46
               

               
Conread position:
               
15-320
               

               
Cow position:
               
chr9:24997551-24997232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
73, 92
               

               
Conread position:
               
15-351
               

               
Cow position:
               
chr9:44832086-44831742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
73, 23
               

               
Conread position:
               
16-261
               

               
Cow position:
               
chr9:30477806-30477557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
149, 90
               

               
Conread position:
               
17-304
               

               
Cow position:
               
chr9:22638072-22638368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 94
               

               
Conread position:
               
17-330
               

               
Cow position:
               
chr9:35849874-35850192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
71, 89
               

               
Conread position:
               
17-342
               

               
Cow position:
               
chr9:63745785-63746110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
71, 26
               

               
Conread position:
               
17-351
               

               
Cow position:
               
chr9:28726754-28726411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
71, 268
               

               
Conread position:
               
17-351
               

               
Cow position:
               
chr9:29006527-29006875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
76, 276
               

               
Conread position:
               
17-351
               

               
Cow position:
               
chr9:38343860-38344210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 29
               

               
Conread position:
               
19-317
               

               
Cow position:
               
chr9:6225482-6225166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
69, 15
               

               
Conread position:
               
23-348
               

               
Cow position:
               
chr9:57897134-57896815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
65, 86
               

               
Conread position:
               
25-181
               

               
Cow position:
               
chr9:6596258-6596098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
63, 97
               

               
Conread position:
               
25-300
               

               
Cow position:
               
chr9:36827113-36827389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
178, 101
               

               
Conread position:
               
25-322
               

               
Cow position:
               
chr9:59795310-59794994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
63, 21
               

               
Conread position:
               
25-351
               

               
Cow position:
               
chr9:3387667-3388006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
64, 265
               

               
Conread position:
               
25-351
               

               
Cow position:
               
chr9:3410760-3411083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
68, 24
               

               
Conread position:
               
25-351
               

               
Cow position:
               
chr9:5594481-5594815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
68, 79
               

               
Conread position:
               
25-363
               

               
Cow position:
               
chr9:35533975-35533628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
37, 41
               

               
Conread position:
               
27-324
               

               
Cow position:
               
chr9:9416415-9416119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 18
               

               
Conread position:
               
30-347
               

               
Cow position:
               
chr9:26057454-26057141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
106, 39
               

               
Conread position:
               
30-351
               

               
Cow position:
               
chr9:33218971-33218637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
58, 50
               

               
Conread position:
               
30-365
               

               
Cow position:
               
chr9:47906298-47905950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
63, 116
               

               
Conread position:
               
32-240
               

               
Cow position:
               
chr9:8919976-8920195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
55, 17
               

               
Conread position:
               
32-332
               

               
Cow position:
               
chr9:49764642-49764952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
61, 72
               

               
Conread position:
               
35-351
               

               
Cow position:
               
chr9:31079094-31078764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
54, 73
               

               
Conread position:
               
42-351
               

               
Cow position:
               
chr9:54998034-54997710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
46, 53
               

               
Conread position:
               
45-304
               

               
Cow position:
               
chr9:41995707-41995982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
91, 250
               

               
Conread position:
               
45-313
               

               
Cow position:
               
chr9:4128783-4128506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
91, 35
               

               
Conread position:
               
48-348
               

               
Cow position:
               
chr9:9516765-9516459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
14, 68
               

               
Conread position:
               
49-348
               

               
Cow position:
               
chr9:33092954-33093256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
39, 61
               

               
Conread position:
               
52-317
               

               
Cow position:
               
chr9:1712469-1712207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
41, 9
               

               
Conread position:
               
52-333
               

               
Cow position:
               
chr9:29035031-29034739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
38, 169
               

               
Conread position:
               
55-315
               

               
Cow position:
               
chr9:30749581-30749306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
46, 239
               

               
Conread position:
               
60-342
               

               
Cow position:
               
chr9:1997156-1997438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
133, 48
               

               
Conread position:
               
61-316
               

               
Cow position:
               
chr9:27077228-27076971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
27, 43
               

               
Conread position:
               
62-234
               

               
Cow position:
               
chr9:1879395-1879567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
26, 51
               

               
Conread position:
               
62-346
               

               
Cow position:
               
chr9:11299675-11299387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
26, 52
               

               
Conread position:
               
62-348
               

               
Cow position:
               
chr9:5442004-5442301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
26, 54
               

               
Conread position:
               
62-348
               

               
Cow position:
               
chr9:34000605-34000300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
26, 42
               

               
Conread position:
               
63-314
               

               
Cow position:
               
chr9:9403158-9402907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
25, 46
               

               
Conread position:
               
63-347
               

               
Cow position:
               
chr9:10092378-10092084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
30, 228
               

               
Conread position:
               
63-351
               

               
Cow position:
               
chr9:28773137-28773432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
24, 50
               

               
Conread position:
               
63-389
               

               
Cow position:
               
chr9:5500869-5501201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
25, 226
               

               
Conread position:
               
64-240
               

               
Cow position:
               
chr9:50667440-50667621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
24, 12
               

               
Conread position:
               
64-348
               

               
Cow position:
               
chr9:64091703-64091999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 33
               

               
Conread position:
               
64-351
               

               
Cow position:
               
chr9:61997581-61997281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 229
               

               
Conread position:
               
65-342
               

               
Cow position:
               
chr9:18002936-18002643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 230
               

               
Conread position:
               
65-351
               

               
Cow position:
               
chr9:50977227-50976931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
22, 69
               

               
Conread position:
               
73-343
               

               
Cow position:
               
chr9:61022637-61022917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
28, 40
               

               
Conread position:
               
75-326
               

               
Cow position:
               
chr9:34689565-34689322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
59, 17
               

               
Conread position:
               
77-327
               

               
Cow position:
               
chr9:60037680-60037946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 219
               

               
Conread position:
               
77-330
               

               
Cow position:
               
chr9:35306088-35305825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
13, 36
               

               
Conread position:
               
91-338
               

               
Cow position:
               
chr9:36066954-36067207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
92-334
               

               
Cow position:
               
chr9:10118619-10118365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
44, 28
               

               
Conread position:
               
93-342
               

               
Cow position:
               
chr9:58439732-58439476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
42, 13
               

               
Conread position:
               
93-351
               

               
Cow position:
               
chr9:41416397-41416665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
42, 197
               

               
Conread position:
               
94-351
               

               
Cow position:
               
chr9:36445675-36445936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
42, 88
               

               
Conread position:
               
95-338
               

               
Cow position:
               
chr9:40542167-40542418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
12, 189
               

               
Conread position:
               
97-351
               

               
Cow position:
               
chr9:44822257-44821991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 52
               

               
Conread position:
               
98-345
               

               
Cow position:
               
chr9:33681734-33681987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
28, 193
               

               
Conread position:
               
99-306
               

               
Cow position:
               
chr9:16182436-16182221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
37, 190
               

               
Conread position:
               
99-351
               

               
Cow position:
               
chr9:37528506-37528771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
35, 9
               

               
Conread position:
               
99-351
               

               
Cow position:
               
chr9:42998416-42998147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
37, 165
               

               
Conread position:
               
100-342
               

               
Cow position:
               
chr9:48343653-48343907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 192
               

               
Conread position:
               
106-351
               

               
Cow position:
               
chr9:57951265-57951015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 177
               

               
Conread position:
               
108-308
               

               
Cow position:
               
chr9:55118146-55118350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
90, 18
               

               
Conread position:
               
108-342
               

               
Cow position:
               
chr9:5245922-5246154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
95, 32
               

               
Conread position:
               
108-342
               

               
Cow position:
               
chr9:10010862-10011108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
24, 181
               

               
Conread position:
               
108-342
               

               
Cow position:
               
chr9:36623383-36623146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
78, 39
               

               
Conread position:
               
108-351
               

               
Cow position:
               
chr9:3924686-3924933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
10, 33
               

               
Conread position:
               
109-351
               

               
Cow position:
               
chr9:1952207-1951955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
27, 181
               

               
Conread position:
               
109-351
               

               
Cow position:
               
chr9:34310088-34310349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
21, 189
               

               
Conread position:
               
109-353
               

               
Cow position:
               
chr9:26390829-26391081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
27, 182
               

               
Conread position:
               
112-341
               

               
Cow position:
               
chr9:27697662-27697424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
24, 10
               

               
Conread position:
               
112-348
               

               
Cow position:
               
chr9:22114570-22114320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
24, 180
               

               
Conread position:
               
112-351
               

               
Cow position:
               
chr9:22228018-22227770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
22, 175
               

               
Conread position:
               
113-339
               

               
Cow position:
               
chr9:45171101-45170866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
23, 175
               

               
Conread position:
               
114-381
               

               
Cow position:
               
chr9:42585564-42585280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
22, 159
               

               
Conread position:
               
115-326
               

               
Cow position:
               
chr9:20989388-20989164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
19, 177
               

               
Conread position:
               
115-332
               

               
Cow position:
               
chr9:30138198-30138423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
19, 172
               

               
Conread position:
               
116-351
               

               
Cow position:
               
chr9:10308940-10308692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
20, 177
               

               
Conread position:
               
117-351
               

               
Cow position:
               
chr9:9490862-9491103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
19, 174
               

               
Conread position:
               
130-345
               

               
Cow position:
               
chr9:20318993-20318769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
56, 11
               

               
Conread position:
               
130-389
               

               
Cow position:
               
chr9:20394033-20393774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
60, 73
               

               
Conread position:
               
133-311
               

               
Cow position:
               
chr9:22440421-22440248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
70, 61
               

               
Conread position:
               
133-317
               

               
Cow position:
               
chr9:37069481-37069288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
53, 156
               

               
Conread position:
               
133-320
               

               
Cow position:
               
chr9:61847062-61846866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
51, 155
               

               
Conread position:
               
133-324
               

               
Cow position:
               
chr9:1984437-1984234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
51, 78
               

               
Conread position:
               
133-325
               

               
Cow position:
               
chr9:44709913-44710110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
57, 148
               

               
Conread position:
               
133-328
               

               
Cow position:
               
chr9:3070332-3070131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
53, 152
               

               
Conread position:
               
133-351
               

               
Cow position:
               
chr9:2398537-2398317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
70, 17
               

               
Conread position:
               
133-351
               

               
Cow position:
               
chr9:24726589-24726363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
53, 21
               

               
Conread position:
               
133-351
               

               
Cow position:
               
chr9:28983273-28983499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
71, 51
               

               
Conread position:
               
133-351
               

               
Cow position:
               
chr9:49279563-49279766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
70, 115
               

               
Conread position:
               
133-351
               

               
Cow position:
               
chr9:51317844-51318073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
55, 166
               

               
Conread position:
               
133-365
               

               
Cow position:
               
chr9:3379211-3379441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
70, 53
               

               
Conread position:
               
138-348
               

               
Cow position:
               
chr9:1350353-1350134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
65, 151
               

               
Conread position:
               
139-335
               

               
Cow position:
               
chr9:35100962-35101166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
64, 148
               

               
Conread position:
               
141-331
               

               
Cow position:
               
chr9:23970829-23970651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
62, 104
               

               
Conread position:
               
141-351
               

               
Cow position:
               
chr9:22616721-22616934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
86, 145
               

               
Conread position:
               
147-387
               

               
Cow position:
               
chr9:33823201-33823443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
56, 138
               

               
Conread position:
               
150-333
               

               
Cow position:
               
chr9:20901019-20900834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
38, 58
               

               
Conread position:
               
160-337
               

               
Cow position:
               
chr9:13802019-13802195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
356-502
               

               
Cow position:
               
chr9:3354364-3354508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
356-507
               

               
Cow position:
               
chr9:59173834-59173986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
368-493
               

               
Cow position:
               
chr9:16176080-16175955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
368-499
               

               
Cow position:
               
chr9:47002502-47002371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
368-502
               

               
Cow position:
               
chr9:28688415-28688279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
368-502
               

               
Cow position:
               
chr9:29027892-29028021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
368-507
               

               
Cow position:
               
chr9:1995602-1995740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
368-507
               

               
Cow position:
               
chr9:4532804-4532666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
368-507
               

               
Cow position:
               
chr9:13476574-13476714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
368-507
               

               
Cow position:
               
chr9:37162502-37162639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
368-507
               

               
Cow position:
               
chr9:37970898-37971036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
368-507
               

               
Cow position:
               
chr9:51181877-51182019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
95, 124
               

               
Conread position:
               
368-507
               

               
Cow position:
               
chr9:60277710-60277847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
368-517
               

               
Cow position:
               
chr9:3566529-3566688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
368-518
               

               
Cow position:
               
chr9:30672679-30672529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
141, 120
               

               
Conread position:
               
370-486
               

               
Cow position:
               
chr9:28440113-28439997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
370-492
               

               
Cow position:
               
chr9:1075893-1076015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
370-493
               

               
Cow position:
               
chr9:163199-163322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
370-493
               

               
Cow position:
               
chr9:16268676-16268553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
370-493
               

               
Cow position:
               
chr9:25484175-25484052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
370-493
               

               
Cow position:
               
chr9:45873650-45873528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
370-500
               

               
Cow position:
               
chr9:25035541-25035671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
370-500
               

               
Cow position:
               
chr9:25754919-25755049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
370-500
               

               
Cow position:
               
chr9:31064737-31064607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
370-500
               

               
Cow position:
               
chr9:49177523-49177653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
370-500
               

               
Cow position:
               
chr9:51210986-51210856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
371-500
               

               
Cow position:
               
chr9:17064084-17064209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
371-501
               

               
Cow position:
               
chr9:20308839-20308970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
81, 12
               

               
Conread position:
               
371-507
               

               
Cow position:
               
chr9:9013408-9013273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
375-493
               

               
Cow position:
               
chr9:34242300-34242418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
375-510
               

               
Cow position:
               
chr9:9705867-9705733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
377-507
               

               
Cow position:
               
chr9:59536399-59536269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
383-486
               

               
Cow position:
               
chr9:2000704-2000807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.