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Cow genome map

           
Conread name:
           
Ova1-OVRM10096D07
        

               
Conread position:
               
27-515
               

               
Cow position:
               
chr1:41004020-41004511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
396, 0
               

               
Conread position:
               
94-500
               

               
Cow position:
               
chr1:87888666-87888263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
151, 30
               

               
Conread position:
               
96-395
               

               
Cow position:
               
chr1:48213866-48214182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
73, 26
               

               
Conread position:
               
118-515
               

               
Cow position:
               
chr1:61005298-61005710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 8
               

               
Conread position:
               
120-345
               

               
Cow position:
               
chr1:42353400-42353183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
30, 12
               

               
Conread position:
               
122-325
               

               
Cow position:
               
chr1:79684178-79684391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
124-491
               

               
Cow position:
               
chr1:66138573-66138195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
8, 31
               

               
Conread position:
               
126-291
               

               
Cow position:
               
chr1:44501657-44501493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
13, 118
               

               
Conread position:
               
126-318
               

               
Cow position:
               
chr1:31801668-31801867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
28, 16
               

               
Conread position:
               
126-396
               

               
Cow position:
               
chr1:67654076-67654349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 46
               

               
Conread position:
               
126-429
               

               
Cow position:
               
chr1:101507597-101507297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
130-324
               

               
Cow position:
               
chr1:90192662-90192463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
109, 30
               

               
Conread position:
               
131-423
               

               
Cow position:
               
chr1:81481138-81481439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 50
               

               
Conread position:
               
132-383
               

               
Cow position:
               
chr1:45315386-45315652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
133-320
               

               
Cow position:
               
chr1:34001287-34001097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
135-326
               

               
Cow position:
               
chr1:102424034-102423837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
101, 36
               

               
Conread position:
               
135-515
               

               
Cow position:
               
chr1:47658587-47658202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
22, 35
               

               
Conread position:
               
137-514
               

               
Cow position:
               
chr1:35555155-35554757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
39, 66
               

               
Conread position:
               
142-415
               

               
Cow position:
               
chr1:92590407-92590149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
34, 18
               

               
Conread position:
               
142-515
               

               
Cow position:
               
chr1:724972-724590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
103, 12
               

               
Conread position:
               
142-515
               

               
Cow position:
               
chr1:68845270-68845634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
20, 125
               

               
Conread position:
               
143-515
               

               
Cow position:
               
chr1:5596977-5597346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 209
               

               
Conread position:
               
144-307
               

               
Cow position:
               
chr1:73644278-73644444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
104, 16
               

               
Conread position:
               
145-284
               

               
Cow position:
               
chr1:51292372-51292231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
92, 27
               

               
Conread position:
               
145-317
               

               
Cow position:
               
chr1:80423499-80423679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
145-328
               

               
Cow position:
               
chr1:22231884-22231690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
18, 140
               

               
Conread position:
               
145-328
               

               
Cow position:
               
chr1:63212026-63212217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
32, 58
               

               
Conread position:
               
145-393
               

               
Cow position:
               
chr1:17056219-17055968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
104, 5
               

               
Conread position:
               
145-429
               

               
Cow position:
               
chr1:80584658-80584370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 26
               

               
Conread position:
               
145-514
               

               
Cow position:
               
chr1:43352416-43352804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 346
               

               
Conread position:
               
147-317
               

               
Cow position:
               
chr1:5479432-5479607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
88, 23
               

               
Conread position:
               
147-389
               

               
Cow position:
               
chr1:22035835-22035590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
101, 24
               

               
Conread position:
               
148-325
               

               
Cow position:
               
chr1:52450991-52450816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
27, 43
               

               
Conread position:
               
148-328
               

               
Cow position:
               
chr1:82336903-82336720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
6, 126
               

               
Conread position:
               
148-328
               

               
Cow position:
               
chr1:97536507-97536332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
14, 102
               

               
Conread position:
               
148-453
               

               
Cow position:
               
chr1:49824838-49825156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 24
               

               
Conread position:
               
149-318
               

               
Cow position:
               
chr1:64421757-64421593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
100, 11
               

               
Conread position:
               
149-515
               

               
Cow position:
               
chr1:55357059-55357434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
20, 199
               

               
Conread position:
               
149-515
               

               
Cow position:
               
chr1:74083961-74084345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
150-313
               

               
Cow position:
               
chr1:73397843-73398017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
150-328
               

               
Cow position:
               
chr1:84815365-84815172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
150-399
               

               
Cow position:
               
chr1:89158480-89158733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
28, 54
               

               
Conread position:
               
150-433
               

               
Cow position:
               
chr1:3966054-3965775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
90, 16
               

               
Conread position:
               
150-468
               

               
Cow position:
               
chr1:635458-635786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
86, 131
               

               
Conread position:
               
150-504
               

               
Cow position:
               
chr1:4243103-4243480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
29, 143
               

               
Conread position:
               
150-505
               

               
Cow position:
               
chr1:484237-484607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
91, 254
               

               
Conread position:
               
151-456
               

               
Cow position:
               
chr1:89157909-89158217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 21
               

               
Conread position:
               
151-461
               

               
Cow position:
               
chr1:22637199-22637519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 32
               

               
Conread position:
               
151-505
               

               
Cow position:
               
chr1:89509708-89510060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 9
               

               
Conread position:
               
152-347
               

               
Cow position:
               
chr1:76474335-76474537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
77, 127
               

               
Conread position:
               
152-417
               

               
Cow position:
               
chr1:70175319-70175589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
93, 8
               

               
Conread position:
               
152-515
               

               
Cow position:
               
chr1:54258791-54258415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 8
               

               
Conread position:
               
153-285
               

               
Cow position:
               
chr1:46294377-46294506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
97, 19
               

               
Conread position:
               
153-328
               

               
Cow position:
               
chr1:14567416-14567595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
23, 99
               

               
Conread position:
               
153-328
               

               
Cow position:
               
chr1:81473380-81473197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
89, 19
               

               
Conread position:
               
153-331
               

               
Cow position:
               
chr1:7966071-7965885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
153-336
               

               
Cow position:
               
chr1:19384234-19384423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
153-385
               

               
Cow position:
               
chr1:53452744-53452519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
175, 52
               

               
Conread position:
               
153-407
               

               
Cow position:
               
chr1:73020437-73020701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 51
               

               
Conread position:
               
153-476
               

               
Cow position:
               
chr1:55819256-55818951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
94, 33
               

               
Conread position:
               
153-505
               

               
Cow position:
               
chr1:43855512-43855162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 169
               

               
Conread position:
               
153-506
               

               
Cow position:
               
chr1:10633263-10632909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 52
               

               
Conread position:
               
153-515
               

               
Cow position:
               
chr1:86110523-86110879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 19
               

               
Conread position:
               
154-280
               

               
Cow position:
               
chr1:83066607-83066741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
154-313
               

               
Cow position:
               
chr1:50906461-50906623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
96, 6
               

               
Conread position:
               
154-314
               

               
Cow position:
               
chr1:101007215-101007373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
110, 9
               

               
Conread position:
               
154-325
               

               
Cow position:
               
chr1:69411475-69411651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
91, 20
               

               
Conread position:
               
154-328
               

               
Cow position:
               
chr1:83677103-83677282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
101, 129
               

               
Conread position:
               
154-386
               

               
Cow position:
               
chr1:49334169-49334411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 6
               

               
Conread position:
               
154-388
               

               
Cow position:
               
chr1:93590370-93590607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
94, 17
               

               
Conread position:
               
154-390
               

               
Cow position:
               
chr1:72422182-72422431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
29, 165
               

               
Conread position:
               
154-412
               

               
Cow position:
               
chr1:81391143-81390874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
126, 18
               

               
Conread position:
               
154-495
               

               
Cow position:
               
chr1:66898271-66898626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
14, 206
               

               
Conread position:
               
154-514
               

               
Cow position:
               
chr1:4414007-4414355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 48
               

               
Conread position:
               
154-514
               

               
Cow position:
               
chr1:91023246-91023615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 51
               

               
Conread position:
               
154-515
               

               
Cow position:
               
chr1:52435500-52435122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
22, 141
               

               
Conread position:
               
154-515
               

               
Cow position:
               
chr1:66430494-66430152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
176, 20
               

               
Conread position:
               
155-391
               

               
Cow position:
               
chr1:26895588-26895835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
21, 202
               

               
Conread position:
               
155-397
               

               
Cow position:
               
chr1:19515398-19515650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
74, 17
               

               
Conread position:
               
156-266
               

               
Cow position:
               
chr1:34767515-34767403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
156-292
               

               
Cow position:
               
chr1:99221413-99221555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
156-322
               

               
Cow position:
               
chr1:81615868-81615702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
82, 15
               

               
Conread position:
               
156-324
               

               
Cow position:
               
chr1:91912553-91912386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
124, 102
               

               
Conread position:
               
156-335
               

               
Cow position:
               
chr1:102730534-102730730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
156-337
               

               
Cow position:
               
chr1:77810544-77810726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
91, 12
               

               
Conread position:
               
156-340
               

               
Cow position:
               
chr1:23101895-23101704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
156-345
               

               
Cow position:
               
chr1:69378377-69378577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
21, 124
               

               
Conread position:
               
156-373
               

               
Cow position:
               
chr1:95153095-95152865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
156-373
               

               
Cow position:
               
chr1:97144249-97144470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
20, 194
               

               
Conread position:
               
156-391
               

               
Cow position:
               
chr1:6394777-6394533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
88, 128
               

               
Conread position:
               
156-403
               

               
Cow position:
               
chr1:92524237-92523977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
19, 25
               

               
Conread position:
               
156-431
               

               
Cow position:
               
chr1:37695683-37695972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
69, 123
               

               
Conread position:
               
156-437
               

               
Cow position:
               
chr1:48206321-48206604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 12
               

               
Conread position:
               
156-464
               

               
Cow position:
               
chr1:71665714-71666030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
122, 95
               

               
Conread position:
               
156-504
               

               
Cow position:
               
chr1:63595828-63596193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
20, 205
               

               
Conread position:
               
156-504
               

               
Cow position:
               
chr1:88913540-88913181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 166
               

               
Conread position:
               
156-505
               

               
Cow position:
               
chr1:19144714-19145059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
27, 94
               

               
Conread position:
               
156-505
               

               
Cow position:
               
chr1:24542349-24542720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
156-513
               

               
Cow position:
               
chr1:64803876-64804250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 258
               

               
Conread position:
               
156-515
               

               
Cow position:
               
chr1:7971622-7971273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
96, 15
               

               
Conread position:
               
156-515
               

               
Cow position:
               
chr1:22628435-22628787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
9, 50
               

               
Conread position:
               
156-515
               

               
Cow position:
               
chr1:22827365-22827019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 35
               

               
Conread position:
               
156-515
               

               
Cow position:
               
chr1:89381492-89381126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 14
               

               
Conread position:
               
156-515
               

               
Cow position:
               
chr1:93499839-93499478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 122
               

               
Conread position:
               
156-515
               

               
Cow position:
               
chr1:97755721-97755369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 150
               

               
Conread position:
               
156-516
               

               
Cow position:
               
chr1:101634920-101634555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 96
               

               
Conread position:
               
157-320
               

               
Cow position:
               
chr1:63994337-63994505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
91, 11
               

               
Conread position:
               
157-391
               

               
Cow position:
               
chr1:8287411-8287654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
88, 132
               

               
Conread position:
               
157-445
               

               
Cow position:
               
chr1:52467504-52467223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 45
               

               
Conread position:
               
157-475
               

               
Cow position:
               
chr1:31794789-31795111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
90, 28
               

               
Conread position:
               
157-513
               

               
Cow position:
               
chr1:81568811-81569176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 18
               

               
Conread position:
               
157-515
               

               
Cow position:
               
chr1:53370303-53369930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
91, 48
               

               
Conread position:
               
157-515
               

               
Cow position:
               
chr1:90621286-90621659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 71
               

               
Conread position:
               
157-515
               

               
Cow position:
               
chr1:100449973-100450333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
170, 48
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr1:101692093-101691888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
87, 164
               

               
Conread position:
               
159-310
               

               
Cow position:
               
chr1:20202517-20202363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
87, 64
               

               
Conread position:
               
160-313
               

               
Cow position:
               
chr1:1489189-1489350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
160-328
               

               
Cow position:
               
chr1:90820264-90820435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
84, 153
               

               
Conread position:
               
160-408
               

               
Cow position:
               
chr1:82538143-82537896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
84, 192
               

               
Conread position:
               
160-434
               

               
Cow position:
               
chr1:54267721-54267999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 149
               

               
Conread position:
               
160-498
               

               
Cow position:
               
chr1:78079940-78079596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
17, 173
               

               
Conread position:
               
160-498
               

               
Cow position:
               
chr1:79640073-79640421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 330
               

               
Conread position:
               
160-506
               

               
Cow position:
               
chr1:21955156-21955512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
76, 113
               

               
Conread position:
               
161-500
               

               
Cow position:
               
chr1:12870795-12871143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
77, 55
               

               
Conread position:
               
163-328
               

               
Cow position:
               
chr1:32035501-32035668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
90, 39
               

               
Conread position:
               
163-432
               

               
Cow position:
               
chr1:78066330-78066602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 215
               

               
Conread position:
               
163-502
               

               
Cow position:
               
chr1:64302037-64302383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 42
               

               
Conread position:
               
163-509
               

               
Cow position:
               
chr1:68826711-68827048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
253, 43
               

               
Conread position:
               
163-515
               

               
Cow position:
               
chr1:37321797-37322150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 74
               

               
Conread position:
               
163-515
               

               
Cow position:
               
chr1:61564993-61564648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 9
               

               
Conread position:
               
163-515
               

               
Cow position:
               
chr1:78811251-78810891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 215
               

               
Conread position:
               
163-515
               

               
Cow position:
               
chr1:83072653-83072295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 17
               

               
Conread position:
               
164-505
               

               
Cow position:
               
chr1:86340248-86340611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
83, 17
               

               
Conread position:
               
165-373
               

               
Cow position:
               
chr1:61011388-61011175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
19, 78
               

               
Conread position:
               
165-515
               

               
Cow position:
               
chr1:32341003-32341353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
17, 74
               

               
Conread position:
               
166-317
               

               
Cow position:
               
chr1:95976543-95976386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
168-334
               

               
Cow position:
               
chr1:46354231-46354406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
168-427
               

               
Cow position:
               
chr1:77739933-77739657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
9, 113
               

               
Conread position:
               
170-328
               

               
Cow position:
               
chr1:68710490-68710320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
170-329
               

               
Cow position:
               
chr1:55110709-55110533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
171-298
               

               
Cow position:
               
chr1:426182-426305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
171-306
               

               
Cow position:
               
chr1:40724797-40724660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
171-323
               

               
Cow position:
               
chr1:77857862-77857714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
171-328
               

               
Cow position:
               
chr1:45099963-45099802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
171-328
               

               
Cow position:
               
chr1:102523435-102523599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
80, 47
               

               
Conread position:
               
171-335
               

               
Cow position:
               
chr1:100513102-100512929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
70, 115
               

               
Conread position:
               
171-354
               

               
Cow position:
               
chr1:85339582-85339400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
171-372
               

               
Cow position:
               
chr1:73551297-73551515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
171-376
               

               
Cow position:
               
chr1:8788495-8788282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
56, 31
               

               
Conread position:
               
171-395
               

               
Cow position:
               
chr1:81858696-81858932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
171-402
               

               
Cow position:
               
chr1:5751520-5751274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
76, 61
               

               
Conread position:
               
171-411
               

               
Cow position:
               
chr1:60045192-60044944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
72, 109
               

               
Conread position:
               
171-429
               

               
Cow position:
               
chr1:100852907-100852658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
80, 32
               

               
Conread position:
               
171-466
               

               
Cow position:
               
chr1:22147422-22147127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
95, 46
               

               
Conread position:
               
171-481
               

               
Cow position:
               
chr1:91651142-91651474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
10, 113
               

               
Conread position:
               
171-502
               

               
Cow position:
               
chr1:24406708-24407027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
11, 62
               

               
Conread position:
               
171-503
               

               
Cow position:
               
chr1:31607689-31608033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
54, 17
               

               
Conread position:
               
171-504
               

               
Cow position:
               
chr1:101267797-101268146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
69, 24
               

               
Conread position:
               
171-515
               

               
Cow position:
               
chr1:38754122-38753769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
171-515
               

               
Cow position:
               
chr1:61741759-61742116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 29
               

               
Conread position:
               
171-515
               

               
Cow position:
               
chr1:70538811-70538459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
171-515
               

               
Cow position:
               
chr1:78097132-78096788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 257
               

               
Conread position:
               
171-516
               

               
Cow position:
               
chr1:13547779-13548136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
77, 19
               

               
Conread position:
               
172-278
               

               
Cow position:
               
chr1:81355199-81355302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
172-290
               

               
Cow position:
               
chr1:12390281-12390393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
172-293
               

               
Cow position:
               
chr1:81354762-81354878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
172-296
               

               
Cow position:
               
chr1:34952442-34952317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
79, 107
               

               
Conread position:
               
172-296
               

               
Cow position:
               
chr1:56107134-56107263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
172-300
               

               
Cow position:
               
chr1:61560292-61560431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
172-302
               

               
Cow position:
               
chr1:45233187-45233059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
172-306
               

               
Cow position:
               
chr1:51626592-51626725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
172-308
               

               
Cow position:
               
chr1:8983454-8983586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
172-309
               

               
Cow position:
               
chr1:70476549-70476690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
65, 104
               

               
Conread position:
               
172-309
               

               
Cow position:
               
chr1:98742220-98742078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
172-310
               

               
Cow position:
               
chr1:39703154-39703024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
172-310
               

               
Cow position:
               
chr1:58420402-58420261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
172-310
               

               
Cow position:
               
chr1:83246632-83246485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
172-312
               

               
Cow position:
               
chr1:2715222-2715080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
172-313
               

               
Cow position:
               
chr1:39095689-39095545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
79, 26
               

               
Conread position:
               
172-313
               

               
Cow position:
               
chr1:80870585-80870435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
172-317
               

               
Cow position:
               
chr1:62181935-62182077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
172-317
               

               
Cow position:
               
chr1:66445160-66445015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 30
               

               
Conread position:
               
172-318
               

               
Cow position:
               
chr1:771585-771728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 57
               

               
Conread position:
               
172-318
               

               
Cow position:
               
chr1:11770038-11770184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
172-320
               

               
Cow position:
               
chr1:40303752-40303601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
172-320
               

               
Cow position:
               
chr1:56719544-56719390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
75, 105
               

               
Conread position:
               
172-320
               

               
Cow position:
               
chr1:69250636-69250484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
62, 82
               

               
Conread position:
               
172-321
               

               
Cow position:
               
chr1:2523168-2523012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
68, 148
               

               
Conread position:
               
172-321
               

               
Cow position:
               
chr1:42592081-42592237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
73, 137
               

               
Conread position:
               
172-321
               

               
Cow position:
               
chr1:54645627-54645476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 38
               

               
Conread position:
               
172-323
               

               
Cow position:
               
chr1:76909869-76909717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
172-324
               

               
Cow position:
               
chr1:5284022-5284186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
172-324
               

               
Cow position:
               
chr1:85622736-85622575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
172-325
               

               
Cow position:
               
chr1:15628483-15628327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
172-325
               

               
Cow position:
               
chr1:42152285-42152433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
172-325
               

               
Cow position:
               
chr1:56913328-56913484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
72, 102
               

               
Conread position:
               
172-325
               

               
Cow position:
               
chr1:59551643-59551482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
172-325
               

               
Cow position:
               
chr1:90879537-90879691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
75, 13
               

               
Conread position:
               
172-325
               

               
Cow position:
               
chr1:98380091-98380252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
75, 108
               

               
Conread position:
               
172-325
               

               
Cow position:
               
chr1:99637047-99637209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
172-326
               

               
Cow position:
               
chr1:3034004-3034155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
82, 30
               

               
Conread position:
               
172-326
               

               
Cow position:
               
chr1:64516695-64516847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
172-326
               

               
Cow position:
               
chr1:77685774-77685937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr1:10470626-10470468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr1:19599156-19599319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
71, 107
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr1:23968860-23969015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
7, 86
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr1:26984216-26984051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr1:43379157-43379320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr1:46004478-46004323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
77, 36
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr1:48301247-48301409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
67, 33
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr1:49297855-49297693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr1:63461082-63460920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr1:67674404-67674561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
7, 11
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr1:75227121-75227278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr1:76518629-76518464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
76, 115
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr1:87149612-87149773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr1:87934076-87934229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr1:89835914-89835759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr1:94823185-94823350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr1:98556914-98557077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
172-331
               

               
Cow position:
               
chr1:33080607-33080772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
81, 8
               

               
Conread position:
               
172-331
               

               
Cow position:
               
chr1:45449491-45449341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
80, 13
               

               
Conread position:
               
172-331
               

               
Cow position:
               
chr1:53474352-53474195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 91
               

               
Conread position:
               
172-331
               

               
Cow position:
               
chr1:84595095-84594927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
172-332
               

               
Cow position:
               
chr1:37470695-37470539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
172-332
               

               
Cow position:
               
chr1:70044548-70044391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
172-335
               

               
Cow position:
               
chr1:64811441-64811268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
172-336
               

               
Cow position:
               
chr1:53457016-53456844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
36, 146
               

               
Conread position:
               
172-338
               

               
Cow position:
               
chr1:30028028-30028200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
172-345
               

               
Cow position:
               
chr1:62469262-62469083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
172-347
               

               
Cow position:
               
chr1:42775110-42774930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
76, 41
               

               
Conread position:
               
172-356
               

               
Cow position:
               
chr1:25021874-25022064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
172-357
               

               
Cow position:
               
chr1:50585672-50585868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
172-357
               

               
Cow position:
               
chr1:71636124-71636315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 107
               

               
Conread position:
               
172-358
               

               
Cow position:
               
chr1:525010-524817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
172-359
               

               
Cow position:
               
chr1:11708820-11709010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
66, 98
               

               
Conread position:
               
172-359
               

               
Cow position:
               
chr1:89146668-89146860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
73, 157
               

               
Conread position:
               
172-361
               

               
Cow position:
               
chr1:70483131-70483328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
172-361
               

               
Cow position:
               
chr1:77098923-77099114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
78, 138
               

               
Conread position:
               
172-364
               

               
Cow position:
               
chr1:30949186-30948995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
78, 31
               

               
Conread position:
               
172-364
               

               
Cow position:
               
chr1:55685774-55685975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
172-367
               

               
Cow position:
               
chr1:87220646-87220460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
75, 31
               

               
Conread position:
               
172-368
               

               
Cow position:
               
chr1:99604988-99605188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
87, 30
               

               
Conread position:
               
172-370
               

               
Cow position:
               
chr1:3583624-3583847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
49, 204
               

               
Conread position:
               
172-370
               

               
Cow position:
               
chr1:43499106-43499299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
157, 65
               

               
Conread position:
               
172-371
               

               
Cow position:
               
chr1:102768379-102768177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
172-372
               

               
Cow position:
               
chr1:40212144-40212337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
36, 144
               

               
Conread position:
               
172-373
               

               
Cow position:
               
chr1:242756-242551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
172-373
               

               
Cow position:
               
chr1:51860360-51860567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
172-376
               

               
Cow position:
               
chr1:68688783-68688574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
172-383
               

               
Cow position:
               
chr1:90267928-90267705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
74, 187
               

               
Conread position:
               
172-387
               

               
Cow position:
               
chr1:31819307-31819091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
73, 56
               

               
Conread position:
               
172-388
               

               
Cow position:
               
chr1:88338854-88338646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
157, 49
               

               
Conread position:
               
172-390
               

               
Cow position:
               
chr1:38706649-38706877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
68, 32
               

               
Conread position:
               
172-390
               

               
Cow position:
               
chr1:45576124-45575911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
155, 49
               

               
Conread position:
               
172-390
               

               
Cow position:
               
chr1:74751424-74751658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
172-390
               

               
Cow position:
               
chr1:100823244-100823014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
75, 181
               

               
Conread position:
               
172-391
               

               
Cow position:
               
chr1:84115-83908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
172-391
               

               
Cow position:
               
chr1:36688176-36688402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
73, 33
               

               
Conread position:
               
172-392
               

               
Cow position:
               
chr1:55753015-55753240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 182
               

               
Conread position:
               
172-392
               

               
Cow position:
               
chr1:72092419-72092648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
63, 108
               

               
Conread position:
               
172-393
               

               
Cow position:
               
chr1:27959343-27959576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
172-393
               

               
Cow position:
               
chr1:102648484-102648251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
172-394
               

               
Cow position:
               
chr1:5006348-5006135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
140, 69
               

               
Conread position:
               
172-395
               

               
Cow position:
               
chr1:97303049-97303277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
74, 154
               

               
Conread position:
               
172-396
               

               
Cow position:
               
chr1:79719012-79718778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
75, 114
               

               
Conread position:
               
172-397
               

               
Cow position:
               
chr1:6759840-6760064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
149, 78
               

               
Conread position:
               
172-398
               

               
Cow position:
               
chr1:6731383-6731151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
78, 210
               

               
Conread position:
               
172-399
               

               
Cow position:
               
chr1:15103088-15102857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
68, 147
               

               
Conread position:
               
172-400
               

               
Cow position:
               
chr1:44946952-44946721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
79, 15
               

               
Conread position:
               
172-402
               

               
Cow position:
               
chr1:98912212-98911973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
62, 162
               

               
Conread position:
               
172-402
               

               
Cow position:
               
chr1:100575837-100576067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
75, 164
               

               
Conread position:
               
172-404
               

               
Cow position:
               
chr1:4055649-4055412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
79, 54
               

               
Conread position:
               
172-404
               

               
Cow position:
               
chr1:79630715-79630942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
15, 45
               

               
Conread position:
               
172-408
               

               
Cow position:
               
chr1:1496323-1496576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
172-412
               

               
Cow position:
               
chr1:71789944-71790192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
75, 54
               

               
Conread position:
               
172-417
               

               
Cow position:
               
chr1:52912688-52912946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
57, 141
               

               
Conread position:
               
172-425
               

               
Cow position:
               
chr1:3942012-3942267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
23, 106
               

               
Conread position:
               
172-425
               

               
Cow position:
               
chr1:52661972-52662231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
59, 35
               

               
Conread position:
               
172-427
               

               
Cow position:
               
chr1:88360089-88359822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
72, 228
               

               
Conread position:
               
172-429
               

               
Cow position:
               
chr1:48618043-48618300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 203
               

               
Conread position:
               
172-429
               

               
Cow position:
               
chr1:62235252-62235508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
47, 71
               

               
Conread position:
               
172-432
               

               
Cow position:
               
chr1:17875509-17875774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
76, 105
               

               
Conread position:
               
172-433
               

               
Cow position:
               
chr1:102754054-102753788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
157, 12
               

               
Conread position:
               
172-434
               

               
Cow position:
               
chr1:41289574-41289843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
12, 220
               

               
Conread position:
               
172-434
               

               
Cow position:
               
chr1:97794345-97794614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
30, 161
               

               
Conread position:
               
172-442
               

               
Cow position:
               
chr1:43286533-43286270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
154, 31
               

               
Conread position:
               
172-447
               

               
Cow position:
               
chr1:62998006-62997721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
12, 262
               

               
Conread position:
               
172-448
               

               
Cow position:
               
chr1:75250316-75250030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
70, 44
               

               
Conread position:
               
172-452
               

               
Cow position:
               
chr1:102529649-102529939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
67, 135
               

               
Conread position:
               
172-460
               

               
Cow position:
               
chr1:90904553-90904847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
72, 214
               

               
Conread position:
               
172-464
               

               
Cow position:
               
chr1:30189361-30189049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
172-465
               

               
Cow position:
               
chr1:102305943-102306243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 138
               

               
Conread position:
               
172-466
               

               
Cow position:
               
chr1:22730937-22730646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
73, 227
               

               
Conread position:
               
172-467
               

               
Cow position:
               
chr1:82513148-82513456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
172-468
               

               
Cow position:
               
chr1:71350520-71350824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 234
               

               
Conread position:
               
172-468
               

               
Cow position:
               
chr1:98583952-98583662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
78, 199
               

               
Conread position:
               
172-470
               

               
Cow position:
               
chr1:29474148-29474449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
94, 38
               

               
Conread position:
               
172-476
               

               
Cow position:
               
chr1:89388547-89388234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 259
               

               
Conread position:
               
172-477
               

               
Cow position:
               
chr1:10716709-10716392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 210
               

               
Conread position:
               
172-477
               

               
Cow position:
               
chr1:56618452-56618761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 142
               

               
Conread position:
               
172-477
               

               
Cow position:
               
chr1:65028724-65028419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 24
               

               
Conread position:
               
172-477
               

               
Cow position:
               
chr1:69694803-69695102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
69, 31
               

               
Conread position:
               
172-477
               

               
Cow position:
               
chr1:77986212-77986532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
70, 111
               

               
Conread position:
               
172-477
               

               
Cow position:
               
chr1:81477659-81477979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 288
               

               
Conread position:
               
172-479
               

               
Cow position:
               
chr1:56225986-56225680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
61, 219
               

               
Conread position:
               
172-480
               

               
Cow position:
               
chr1:628172-627848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
66, 225
               

               
Conread position:
               
172-480
               

               
Cow position:
               
chr1:79135483-79135164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
75, 98
               

               
Conread position:
               
172-482
               

               
Cow position:
               
chr1:261260-261594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 49
               

               
Conread position:
               
172-483
               

               
Cow position:
               
chr1:42482404-42482086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
29, 131
               

               
Conread position:
               
172-483
               

               
Cow position:
               
chr1:78794032-78794342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
78, 216
               

               
Conread position:
               
172-484
               

               
Cow position:
               
chr1:22824113-22823789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
74, 311
               

               
Conread position:
               
172-489
               

               
Cow position:
               
chr1:20104470-20104146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 229
               

               
Conread position:
               
172-492
               

               
Cow position:
               
chr1:5423529-5423862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
99, 79
               

               
Conread position:
               
172-494
               

               
Cow position:
               
chr1:42868746-42869063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
172-495
               

               
Cow position:
               
chr1:11172572-11172246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
59, 107
               

               
Conread position:
               
172-498
               

               
Cow position:
               
chr1:26934064-26934392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
72, 203
               

               
Conread position:
               
172-499
               

               
Cow position:
               
chr1:5010629-5010972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
65, 111
               

               
Conread position:
               
172-499
               

               
Cow position:
               
chr1:35600086-35600429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
63, 115
               

               
Conread position:
               
172-500
               

               
Cow position:
               
chr1:78838991-78838665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 69
               

               
Conread position:
               
172-500
               

               
Cow position:
               
chr1:100817745-100817424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
81, 106
               

               
Conread position:
               
172-502
               

               
Cow position:
               
chr1:100552170-100551833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
148, 75
               

               
Conread position:
               
172-503
               

               
Cow position:
               
chr1:7443186-7442847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
74, 167
               

               
Conread position:
               
172-503
               

               
Cow position:
               
chr1:16060804-16061157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
172-503
               

               
Cow position:
               
chr1:68863223-68862897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 76
               

               
Conread position:
               
172-503
               

               
Cow position:
               
chr1:97954279-97954595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 79
               

               
Conread position:
               
172-504
               

               
Cow position:
               
chr1:64572718-64572376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 230
               

               
Conread position:
               
172-504
               

               
Cow position:
               
chr1:101835020-101834687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
70, 31
               

               
Conread position:
               
172-505
               

               
Cow position:
               
chr1:1878227-1877890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
74, 159
               

               
Conread position:
               
172-505
               

               
Cow position:
               
chr1:7740147-7739821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
34, 231
               

               
Conread position:
               
172-505
               

               
Cow position:
               
chr1:22526078-22525740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 232
               

               
Conread position:
               
172-505
               

               
Cow position:
               
chr1:24132859-24133196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 232
               

               
Conread position:
               
172-505
               

               
Cow position:
               
chr1:31934708-31934373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
76, 103
               

               
Conread position:
               
172-505
               

               
Cow position:
               
chr1:51394622-51394283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
81, 225
               

               
Conread position:
               
172-505
               

               
Cow position:
               
chr1:56225670-56225328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 25
               

               
Conread position:
               
172-505
               

               
Cow position:
               
chr1:70227487-70227831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 111
               

               
Conread position:
               
172-505
               

               
Cow position:
               
chr1:76740468-76740822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
65, 113
               

               
Conread position:
               
172-505
               

               
Cow position:
               
chr1:95101155-95100824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
81, 189
               

               
Conread position:
               
172-505
               

               
Cow position:
               
chr1:96365853-96365528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
79, 31
               

               
Conread position:
               
172-506
               

               
Cow position:
               
chr1:47886278-47886628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
74, 8
               

               
Conread position:
               
172-508
               

               
Cow position:
               
chr1:196802-197145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 98
               

               
Conread position:
               
172-508
               

               
Cow position:
               
chr1:8128775-8129108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 33
               

               
Conread position:
               
172-508
               

               
Cow position:
               
chr1:97232175-97231816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
72, 31
               

               
Conread position:
               
172-509
               

               
Cow position:
               
chr1:71119725-71119370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
73, 106
               

               
Conread position:
               
172-512
               

               
Cow position:
               
chr1:51417969-51417628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
16, 59
               

               
Conread position:
               
172-512
               

               
Cow position:
               
chr1:54156530-54156883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 228
               

               
Conread position:
               
172-513
               

               
Cow position:
               
chr1:61012510-61012167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 74
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr1:1980906-1981261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 30
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr1:4691792-4691447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
68, 167
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr1:6102696-6103060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
60, 111
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr1:11853482-11853833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
70, 37
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr1:14205960-14206303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
214, 36
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr1:27145440-27145797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
86, 242
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr1:41056884-41056536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 19
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr1:42256301-42256651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
77, 33
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr1:43505728-43505377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr1:61391592-61391936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 13
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr1:69678119-69678469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 151
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr1:70422506-70422157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
71, 29
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr1:73545704-73546050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
71, 111
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr1:76612928-76613279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
70, 228
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr1:87198032-87197680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 266
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr1:92197658-92197317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
79, 30
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr1:96964523-96964173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
73, 164
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:1956134-1956476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 81
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:3324078-3323713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
73, 115
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:3923600-3923943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 231
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:6166436-6166093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
202, 77
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:7748420-7748069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:7752584-7752235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:12222400-12222753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
64, 111
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:15547669-15547320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
78, 201
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:19481896-19482223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 33
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:20000552-20000899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 67
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:20667546-20667890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 29
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:22192974-22192615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 258
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:22729258-22728903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 22
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:25281473-25281824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
151, 35
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:25383873-25383514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 198
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:29626707-29627059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
63, 12
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:33720308-33719969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
65, 164
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:34160032-34159687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
136, 74
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:34771295-34771653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 30
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:35162609-35162259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
77, 47
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:36998386-36998044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
81, 195
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:37706765-37707113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:41697258-41696910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 215
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:42887076-42887413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 220
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:44507172-44506819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:49317297-49317645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
81, 181
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:50930776-50931124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 182
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:54206615-54206967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 95
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:54478520-54478176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 69
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:55230177-55229836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
77, 225
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:55705043-55705398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 41
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:56477789-56477444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 77
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:59519115-59518772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 94
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:61885116-61884771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 234
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:62964472-62964130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 210
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:63434594-63434954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
63, 232
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:64678884-64678553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 51
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:68763480-68763830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
58, 166
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:68817596-68817947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 25
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:69539889-69539549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 177
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:70379962-70380294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 55
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:70435189-70434855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 10
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:71295100-71295459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 32
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:72011618-72011958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 78
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:74929504-74929862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
65, 111
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:74955828-74956170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 76
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:75745064-75744712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 26
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:77462543-77462212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 34
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:78857122-78857469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 234
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:81290708-81290366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 252
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:82936401-82936734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 24
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:84811737-84812081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 273
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:85029140-85028811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 59
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:86682364-86682711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 10
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:91065953-91066301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 172
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:101822300-101822652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
69, 144
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr1:102266066-102266421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
80, 240
               

               
Conread position:
               
172-516
               

               
Cow position:
               
chr1:79164878-79165235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 105
               

               
Conread position:
               
173-324
               

               
Cow position:
               
chr1:47969443-47969293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
106, 90
               

               
Conread position:
               
173-326
               

               
Cow position:
               
chr1:10523902-10523744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
66, 29
               

               
Conread position:
               
173-339
               

               
Cow position:
               
chr1:29671017-29671196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
67, 29
               

               
Conread position:
               
173-345
               

               
Cow position:
               
chr1:70416557-70416738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
173-358
               

               
Cow position:
               
chr1:100538729-100538549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
35, 54
               

               
Conread position:
               
173-361
               

               
Cow position:
               
chr1:4329706-4329894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
173-361
               

               
Cow position:
               
chr1:71945877-71946078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
72, 36
               

               
Conread position:
               
173-407
               

               
Cow position:
               
chr1:57089476-57089721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
65, 12
               

               
Conread position:
               
173-432
               

               
Cow position:
               
chr1:46143264-46143526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 216
               

               
Conread position:
               
173-450
               

               
Cow position:
               
chr1:100474442-100474154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
77, 260
               

               
Conread position:
               
173-503
               

               
Cow position:
               
chr1:93110429-93110758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
147, 64
               

               
Conread position:
               
173-506
               

               
Cow position:
               
chr1:48443988-48444333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
71, 223
               

               
Conread position:
               
173-515
               

               
Cow position:
               
chr1:12464462-12464814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 234
               

               
Conread position:
               
173-515
               

               
Cow position:
               
chr1:16855498-16855839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
67, 75
               

               
Conread position:
               
173-515
               

               
Cow position:
               
chr1:33330899-33331233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 74
               

               
Conread position:
               
173-515
               

               
Cow position:
               
chr1:42175931-42175576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 208
               

               
Conread position:
               
173-515
               

               
Cow position:
               
chr1:71228298-71227932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
74, 202
               

               
Conread position:
               
173-515
               

               
Cow position:
               
chr1:73960889-73960557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 29
               

               
Conread position:
               
174-294
               

               
Cow position:
               
chr1:8778136-8778259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
174-317
               

               
Cow position:
               
chr1:31274785-31274937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
174-319
               

               
Cow position:
               
chr1:15875861-15875711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
174-325
               

               
Cow position:
               
chr1:42797078-42796922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
74, 19
               

               
Conread position:
               
174-327
               

               
Cow position:
               
chr1:92188161-92188000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
174-328
               

               
Cow position:
               
chr1:32217440-32217284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
70, 140
               

               
Conread position:
               
174-328
               

               
Cow position:
               
chr1:40077992-40077836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
79, 42
               

               
Conread position:
               
174-328
               

               
Cow position:
               
chr1:54569903-54569740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
174-328
               

               
Cow position:
               
chr1:71664692-71664855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
174-331
               

               
Cow position:
               
chr1:20537404-20537244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
174-331
               

               
Cow position:
               
chr1:22828371-22828531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
174-331
               

               
Cow position:
               
chr1:41022618-41022458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
174-331
               

               
Cow position:
               
chr1:46245534-46245701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
45, 130
               

               
Conread position:
               
174-331
               

               
Cow position:
               
chr1:79178833-79178667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
174-331
               

               
Cow position:
               
chr1:94712961-94713126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
71, 94
               

               
Conread position:
               
174-345
               

               
Cow position:
               
chr1:60403971-60403788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
174-373
               

               
Cow position:
               
chr1:97540841-97540629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
64, 110
               

               
Conread position:
               
174-387
               

               
Cow position:
               
chr1:20871354-20871579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
174-396
               

               
Cow position:
               
chr1:1380203-1379975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
35, 171
               

               
Conread position:
               
174-416
               

               
Cow position:
               
chr1:97833899-97833663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
174-428
               

               
Cow position:
               
chr1:30862211-30862471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
74, 11
               

               
Conread position:
               
174-434
               

               
Cow position:
               
chr1:52139426-52139698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
73, 42
               

               
Conread position:
               
174-448
               

               
Cow position:
               
chr1:47790466-47790747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
65, 125
               

               
Conread position:
               
174-453
               

               
Cow position:
               
chr1:21954025-21954318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
70, 102
               

               
Conread position:
               
174-465
               

               
Cow position:
               
chr1:38419229-38418934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
7, 32
               

               
Conread position:
               
174-466
               

               
Cow position:
               
chr1:22943826-22944125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
70, 159
               

               
Conread position:
               
174-468
               

               
Cow position:
               
chr1:46031163-46030858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
174-471
               

               
Cow position:
               
chr1:4391066-4391387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
64, 192
               

               
Conread position:
               
174-473
               

               
Cow position:
               
chr1:10617093-10616774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
63, 243
               

               
Conread position:
               
174-477
               

               
Cow position:
               
chr1:27463330-27463021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 41
               

               
Conread position:
               
174-491
               

               
Cow position:
               
chr1:38277824-38278162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
68, 108
               

               
Conread position:
               
174-491
               

               
Cow position:
               
chr1:84103856-84104178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
67, 229
               

               
Conread position:
               
174-494
               

               
Cow position:
               
chr1:72105602-72105286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
75, 29
               

               
Conread position:
               
174-504
               

               
Cow position:
               
chr1:23186600-23186934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
75, 144
               

               
Conread position:
               
174-504
               

               
Cow position:
               
chr1:78092242-78091895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
74, 236
               

               
Conread position:
               
174-504
               

               
Cow position:
               
chr1:89741794-89742134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 61
               

               
Conread position:
               
174-505
               

               
Cow position:
               
chr1:10941896-10942233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
71, 107
               

               
Conread position:
               
174-505
               

               
Cow position:
               
chr1:10964490-10964153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
71, 107
               

               
Conread position:
               
174-505
               

               
Cow position:
               
chr1:14308827-14309176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
63, 118
               

               
Conread position:
               
174-505
               

               
Cow position:
               
chr1:29452125-29451780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
74, 116
               

               
Conread position:
               
174-505
               

               
Cow position:
               
chr1:72068632-72068977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 14
               

               
Conread position:
               
174-505
               

               
Cow position:
               
chr1:81228134-81228478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 24
               

               
Conread position:
               
174-505
               

               
Cow position:
               
chr1:92996684-92997037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
70, 117
               

               
Conread position:
               
174-506
               

               
Cow position:
               
chr1:96304772-96305115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
69, 15
               

               
Conread position:
               
174-506
               

               
Cow position:
               
chr1:102756234-102756568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
77, 9
               

               
Conread position:
               
174-512
               

               
Cow position:
               
chr1:16766884-16767226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
63, 167
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr1:874865-874498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
49, 190
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr1:18936635-18936978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 104
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr1:21787526-21787182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 45
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr1:25735070-25734710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
77, 38
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr1:29935189-29935526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 50
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr1:40600227-40599895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 35
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr1:41182038-41181695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
155, 77
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr1:42397994-42398345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
104, 77
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr1:51446084-51445731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 34
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr1:53374629-53374283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
64, 29
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr1:54199195-54199532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
106, 14
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr1:55428751-55429104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 232
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr1:70829098-70828755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 34
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr1:72034726-72035074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
76, 31
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr1:77620751-77620403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
120, 89
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr1:87072896-87072556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
60, 81
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr1:97611471-97611801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
105, 29
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr1:101714318-101713973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 151
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr1:102785148-102784816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 71
               

               
Conread position:
               
175-274
               

               
Cow position:
               
chr1:102611723-102611623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
175-307
               

               
Cow position:
               
chr1:32675020-32674894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
175-314
               

               
Cow position:
               
chr1:92578633-92578777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
175-327
               

               
Cow position:
               
chr1:95049664-95049823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
69, 30
               

               
Conread position:
               
175-328
               

               
Cow position:
               
chr1:40284448-40284597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
175-328
               

               
Cow position:
               
chr1:51968728-51968579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
175-328
               

               
Cow position:
               
chr1:89297906-89298068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 129
               

               
Conread position:
               
175-328
               

               
Cow position:
               
chr1:89301515-89301677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 129
               

               
Conread position:
               
175-328
               

               
Cow position:
               
chr1:92363469-92363621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
75, 98
               

               
Conread position:
               
175-329
               

               
Cow position:
               
chr1:84787461-84787311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
175-331
               

               
Cow position:
               
chr1:25956097-25955934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
175-338
               

               
Cow position:
               
chr1:73866995-73867152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
151, 73
               

               
Conread position:
               
175-345
               

               
Cow position:
               
chr1:1605930-1606112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
175-371
               

               
Cow position:
               
chr1:101439288-101439486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
75, 30
               

               
Conread position:
               
175-372
               

               
Cow position:
               
chr1:100573427-100573633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
175-381
               

               
Cow position:
               
chr1:759211-759432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
175-385
               

               
Cow position:
               
chr1:95618842-95618624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
175-387
               

               
Cow position:
               
chr1:24530699-24530482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 193
               

               
Conread position:
               
175-393
               

               
Cow position:
               
chr1:63079202-63078984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
175-394
               

               
Cow position:
               
chr1:95835594-95835824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
70, 224
               

               
Conread position:
               
175-395
               

               
Cow position:
               
chr1:73721565-73721332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
64, 98
               

               
Conread position:
               
175-396
               

               
Cow position:
               
chr1:41027273-41027046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
175-397
               

               
Cow position:
               
chr1:6590238-6590004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
70, 215
               

               
Conread position:
               
175-402
               

               
Cow position:
               
chr1:49980909-49980674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
77, 146
               

               
Conread position:
               
175-423
               

               
Cow position:
               
chr1:6854118-6854358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
63, 27
               

               
Conread position:
               
175-426
               

               
Cow position:
               
chr1:33998950-33998699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 82
               

               
Conread position:
               
175-429
               

               
Cow position:
               
chr1:35671737-35671482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 200
               

               
Conread position:
               
175-434
               

               
Cow position:
               
chr1:30983291-30983556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
62, 163
               

               
Conread position:
               
175-439
               

               
Cow position:
               
chr1:2462572-2462313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
70, 33
               

               
Conread position:
               
175-448
               

               
Cow position:
               
chr1:39426816-39427083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
147, 64
               

               
Conread position:
               
175-467
               

               
Cow position:
               
chr1:67585752-67585448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
111, 76
               

               
Conread position:
               
175-477
               

               
Cow position:
               
chr1:5636871-5637186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
137, 62
               

               
Conread position:
               
175-477
               

               
Cow position:
               
chr1:41137947-41138242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 205
               

               
Conread position:
               
175-479
               

               
Cow position:
               
chr1:82880832-82880532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
155, 63
               

               
Conread position:
               
175-482
               

               
Cow position:
               
chr1:67919329-67919019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
155, 85
               

               
Conread position:
               
175-486
               

               
Cow position:
               
chr1:52052532-52052839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
22, 63
               

               
Conread position:
               
175-503
               

               
Cow position:
               
chr1:14379349-14379671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
76, 151
               

               
Conread position:
               
175-503
               

               
Cow position:
               
chr1:101860286-101860625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
175-505
               

               
Cow position:
               
chr1:10778755-10778428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 33
               

               
Conread position:
               
175-505
               

               
Cow position:
               
chr1:19466237-19465919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
145, 52
               

               
Conread position:
               
175-505
               

               
Cow position:
               
chr1:20950918-20950583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
69, 198
               

               
Conread position:
               
175-505
               

               
Cow position:
               
chr1:45555566-45555226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 33
               

               
Conread position:
               
175-505
               

               
Cow position:
               
chr1:86056877-86057196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
74, 172
               

               
Conread position:
               
175-505
               

               
Cow position:
               
chr1:89449099-89448759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 54
               

               
Conread position:
               
175-506
               

               
Cow position:
               
chr1:99609568-99609228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
63, 152
               

               
Conread position:
               
175-508
               

               
Cow position:
               
chr1:53521106-53520766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
63, 28
               

               
Conread position:
               
175-508
               

               
Cow position:
               
chr1:90595376-90595696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
242, 73
               

               
Conread position:
               
175-509
               

               
Cow position:
               
chr1:57575563-57575901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 218
               

               
Conread position:
               
175-513
               

               
Cow position:
               
chr1:39224738-39225071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
155, 66
               

               
Conread position:
               
175-514
               

               
Cow position:
               
chr1:6304676-6305012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
64, 97
               

               
Conread position:
               
175-514
               

               
Cow position:
               
chr1:14980937-14981268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
155, 64
               

               
Conread position:
               
175-514
               

               
Cow position:
               
chr1:62519567-62519210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
91, 159
               

               
Conread position:
               
175-514
               

               
Cow position:
               
chr1:71045936-71045607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
244, 64
               

               
Conread position:
               
175-514
               

               
Cow position:
               
chr1:86113195-86113558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
70, 110
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr1:24777783-24778133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 140
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr1:26178607-26178959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
78, 174
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr1:28563360-28563717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 262
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr1:39417930-39418270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
151, 38
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr1:40192502-40192831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
89, 76
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr1:41115535-41115863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
186, 40
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr1:43340432-43340767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
75, 134
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr1:43872108-43872479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr1:48105224-48105582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 157
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr1:65318778-65318427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 104
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr1:75383164-75382847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
279, 74
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr1:95558240-95557888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
64, 16
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr1:101632151-101632487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
152, 27
               

               
Conread position:
               
175-516
               

               
Cow position:
               
chr1:82337579-82337930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 151
               

               
Conread position:
               
176-293
               

               
Cow position:
               
chr1:80733195-80733079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
176-318
               

               
Cow position:
               
chr1:99031776-99031927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
60, 97
               

               
Conread position:
               
176-328
               

               
Cow position:
               
chr1:32014391-32014238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
176-328
               

               
Cow position:
               
chr1:91796042-91796186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
176-338
               

               
Cow position:
               
chr1:56749014-56748841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
176-374
               

               
Cow position:
               
chr1:29329746-29329534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
176-394
               

               
Cow position:
               
chr1:852373-852143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
176-395
               

               
Cow position:
               
chr1:67529256-67529027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
59, 183
               

               
Conread position:
               
176-477
               

               
Cow position:
               
chr1:42541791-42541486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 22
               

               
Conread position:
               
176-478
               

               
Cow position:
               
chr1:53651179-53650883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
50, 76
               

               
Conread position:
               
176-505
               

               
Cow position:
               
chr1:8818-8483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
63, 216
               

               
Conread position:
               
176-515
               

               
Cow position:
               
chr1:15334088-15333733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 149
               

               
Conread position:
               
176-515
               

               
Cow position:
               
chr1:33206674-33207019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
71, 200
               

               
Conread position:
               
176-515
               

               
Cow position:
               
chr1:68855366-68855022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 183
               

               
Conread position:
               
176-515
               

               
Cow position:
               
chr1:96472615-96472296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
330, 56
               

               
Conread position:
               
177-328
               

               
Cow position:
               
chr1:96558647-96558807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
177-329
               

               
Cow position:
               
chr1:96362239-96362384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
177-331
               

               
Cow position:
               
chr1:68730203-68730037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
177-335
               

               
Cow position:
               
chr1:64960247-64960399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
31, 41
               

               
Conread position:
               
177-379
               

               
Cow position:
               
chr1:95156766-95156976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
66, 201
               

               
Conread position:
               
177-407
               

               
Cow position:
               
chr1:500375-500137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
55, 232
               

               
Conread position:
               
177-429
               

               
Cow position:
               
chr1:79004175-79003913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 125
               

               
Conread position:
               
177-482
               

               
Cow position:
               
chr1:6826093-6826404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
62, 42
               

               
Conread position:
               
177-495
               

               
Cow position:
               
chr1:27114836-27114533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
281, 28
               

               
Conread position:
               
177-515
               

               
Cow position:
               
chr1:101280539-101280864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
69, 7
               

               
Conread position:
               
178-310
               

               
Cow position:
               
chr1:67743540-67743676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
178-328
               

               
Cow position:
               
chr1:23373059-23372901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
178-472
               

               
Cow position:
               
chr1:98468000-98467708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
41, 159
               

               
Conread position:
               
178-515
               

               
Cow position:
               
chr1:33409425-33409776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
59, 111
               

               
Conread position:
               
179-331
               

               
Cow position:
               
chr1:23633730-23633891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
68, 102
               

               
Conread position:
               
179-507
               

               
Cow position:
               
chr1:97090514-97090187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 17
               

               
Conread position:
               
180-291
               

               
Cow position:
               
chr1:43052306-43052422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
180-335
               

               
Cow position:
               
chr1:100800573-100800737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
180-389
               

               
Cow position:
               
chr1:66752436-66752651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
180-412
               

               
Cow position:
               
chr1:97717380-97717619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
65, 116
               

               
Conread position:
               
180-430
               

               
Cow position:
               
chr1:79146618-79146881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
36, 141
               

               
Conread position:
               
180-434
               

               
Cow position:
               
chr1:95072539-95072264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
180-465
               

               
Cow position:
               
chr1:37726218-37726513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
37, 227
               

               
Conread position:
               
180-485
               

               
Cow position:
               
chr1:81582291-81582003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
148, 54
               

               
Conread position:
               
180-505
               

               
Cow position:
               
chr1:63530755-63530435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
61, 224
               

               
Conread position:
               
180-515
               

               
Cow position:
               
chr1:34686361-34686046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
66, 16
               

               
Conread position:
               
180-515
               

               
Cow position:
               
chr1:68618744-68619082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 23
               

               
Conread position:
               
181-328
               

               
Cow position:
               
chr1:79169958-79170111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
67, 21
               

               
Conread position:
               
181-477
               

               
Cow position:
               
chr1:98060254-98059939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 214
               

               
Conread position:
               
182-321
               

               
Cow position:
               
chr1:100727595-100727738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
62, 24
               

               
Conread position:
               
182-328
               

               
Cow position:
               
chr1:81638733-81638590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
69, 20
               

               
Conread position:
               
182-331
               

               
Cow position:
               
chr1:4294539-4294383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
65, 34
               

               
Conread position:
               
182-345
               

               
Cow position:
               
chr1:91743269-91743437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
182-465
               

               
Cow position:
               
chr1:60987186-60986895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
64, 160
               

               
Conread position:
               
182-466
               

               
Cow position:
               
chr1:49082940-49082641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
66, 176
               

               
Conread position:
               
182-474
               

               
Cow position:
               
chr1:77425417-77425719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
78, 233
               

               
Conread position:
               
182-489
               

               
Cow position:
               
chr1:3607989-3607688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
218, 64
               

               
Conread position:
               
182-490
               

               
Cow position:
               
chr1:69551285-69551607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 284
               

               
Conread position:
               
182-503
               

               
Cow position:
               
chr1:53623148-53622823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
55, 100
               

               
Conread position:
               
182-512
               

               
Cow position:
               
chr1:36880481-36880134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 171
               

               
Conread position:
               
182-515
               

               
Cow position:
               
chr1:95177112-95176791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 50
               

               
Conread position:
               
182-515
               

               
Cow position:
               
chr1:100400010-100400350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
103, 68
               

               
Conread position:
               
182-515
               

               
Cow position:
               
chr1:100762268-100761931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 161
               

               
Conread position:
               
183-313
               

               
Cow position:
               
chr1:1799225-1799087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
183-326
               

               
Cow position:
               
chr1:63905071-63905215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
183-327
               

               
Cow position:
               
chr1:38055313-38055458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
66, 22
               

               
Conread position:
               
183-328
               

               
Cow position:
               
chr1:61134608-61134454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
183-334
               

               
Cow position:
               
chr1:99629355-99629201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
56, 87
               

               
Conread position:
               
183-360
               

               
Cow position:
               
chr1:76698856-76699024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
183-392
               

               
Cow position:
               
chr1:62034642-62034853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
42, 69
               

               
Conread position:
               
183-393
               

               
Cow position:
               
chr1:2972113-2971889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
60, 172
               

               
Conread position:
               
183-396
               

               
Cow position:
               
chr1:83093056-83092846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
57, 142
               

               
Conread position:
               
183-428
               

               
Cow position:
               
chr1:64113607-64113854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
105, 59
               

               
Conread position:
               
183-460
               

               
Cow position:
               
chr1:45223769-45223487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
68, 167
               

               
Conread position:
               
183-491
               

               
Cow position:
               
chr1:72813810-72813488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
65, 36
               

               
Conread position:
               
183-492
               

               
Cow position:
               
chr1:58754605-58754920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 43
               

               
Conread position:
               
183-495
               

               
Cow position:
               
chr1:100324565-100324871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
231, 67
               

               
Conread position:
               
183-500
               

               
Cow position:
               
chr1:34856432-34856770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
183-504
               

               
Cow position:
               
chr1:77720067-77720372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
168, 55
               

               
Conread position:
               
183-505
               

               
Cow position:
               
chr1:56229429-56229113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
30, 65
               

               
Conread position:
               
183-505
               

               
Cow position:
               
chr1:102349566-102349893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
68, 40
               

               
Conread position:
               
183-515
               

               
Cow position:
               
chr1:6078093-6077750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
56, 160
               

               
Conread position:
               
183-515
               

               
Cow position:
               
chr1:6941659-6941317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
62, 221
               

               
Conread position:
               
183-515
               

               
Cow position:
               
chr1:6959072-6958730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
62, 221
               

               
Conread position:
               
183-515
               

               
Cow position:
               
chr1:11729365-11729033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
6, 50
               

               
Conread position:
               
183-515
               

               
Cow position:
               
chr1:24581759-24581435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
71, 20
               

               
Conread position:
               
183-515
               

               
Cow position:
               
chr1:45019613-45019955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
184-314
               

               
Cow position:
               
chr1:22394481-22394619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
184-314
               

               
Cow position:
               
chr1:37503690-37503815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
184-359
               

               
Cow position:
               
chr1:13828395-13828578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
54, 21
               

               
Conread position:
               
184-389
               

               
Cow position:
               
chr1:83024973-83025186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
184-410
               

               
Cow position:
               
chr1:85772198-85771968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
44, 74
               

               
Conread position:
               
184-503
               

               
Cow position:
               
chr1:71078770-71079092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 82
               

               
Conread position:
               
184-509
               

               
Cow position:
               
chr1:87095019-87095373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
184-513
               

               
Cow position:
               
chr1:101788905-101789218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
55, 140
               

               
Conread position:
               
184-514
               

               
Cow position:
               
chr1:4291347-4291011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 40
               

               
Conread position:
               
184-515
               

               
Cow position:
               
chr1:31272261-31272589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 19
               

               
Conread position:
               
184-515
               

               
Cow position:
               
chr1:80311649-80311322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
66, 169
               

               
Conread position:
               
185-325
               

               
Cow position:
               
chr1:45505741-45505882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
15, 73
               

               
Conread position:
               
185-328
               

               
Cow position:
               
chr1:1802361-1802209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
185-330
               

               
Cow position:
               
chr1:52369990-52370131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
185-335
               

               
Cow position:
               
chr1:100812109-100812259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
66, 17
               

               
Conread position:
               
185-390
               

               
Cow position:
               
chr1:53402975-53402768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
63, 157
               

               
Conread position:
               
185-499
               

               
Cow position:
               
chr1:17196434-17196761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 319
               

               
Conread position:
               
185-504
               

               
Cow position:
               
chr1:6228390-6228722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
28, 98
               

               
Conread position:
               
185-515
               

               
Cow position:
               
chr1:43388863-43389196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 49
               

               
Conread position:
               
185-515
               

               
Cow position:
               
chr1:72285880-72286202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
14, 31
               

               
Conread position:
               
185-515
               

               
Cow position:
               
chr1:95499305-95499640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 199
               

               
Conread position:
               
185-515
               

               
Cow position:
               
chr1:96081669-96081336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
50, 23
               

               
Conread position:
               
186-376
               

               
Cow position:
               
chr1:22461049-22461247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
57, 97
               

               
Conread position:
               
186-515
               

               
Cow position:
               
chr1:98031105-98030770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 16
               

               
Conread position:
               
187-328
               

               
Cow position:
               
chr1:69532337-69532481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
187-368
               

               
Cow position:
               
chr1:50329679-50329494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
187-388
               

               
Cow position:
               
chr1:31256041-31256244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
30, 167
               

               
Conread position:
               
187-509
               

               
Cow position:
               
chr1:2975800-2976137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
58, 195
               

               
Conread position:
               
187-515
               

               
Cow position:
               
chr1:93528883-93528546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 62
               

               
Conread position:
               
188-384
               

               
Cow position:
               
chr1:69940636-69940840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
188-434
               

               
Cow position:
               
chr1:92032411-92032667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
64, 10
               

               
Conread position:
               
188-499
               

               
Cow position:
               
chr1:40215224-40215550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
46, 99
               

               
Conread position:
               
190-339
               

               
Cow position:
               
chr1:93235746-93235897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
61, 90
               

               
Conread position:
               
190-515
               

               
Cow position:
               
chr1:92963563-92963250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
71, 55
               

               
Conread position:
               
190-515
               

               
Cow position:
               
chr1:101551638-101551313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
91, 39
               

               
Conread position:
               
191-498
               

               
Cow position:
               
chr1:99642184-99642497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
50, 164
               

               
Conread position:
               
191-505
               

               
Cow position:
               
chr1:43311583-43311913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
48, 324
               

               
Conread position:
               
192-337
               

               
Cow position:
               
chr1:6230126-6229982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
58, 17
               

               
Conread position:
               
192-466
               

               
Cow position:
               
chr1:69227265-69227549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
58, 66
               

               
Conread position:
               
193-331
               

               
Cow position:
               
chr1:81471534-81471394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
56, 110
               

               
Conread position:
               
194-515
               

               
Cow position:
               
chr1:53398155-53397843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 197
               

               
Conread position:
               
196-504
               

               
Cow position:
               
chr1:19569035-19568715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
50, 153
               

               
Conread position:
               
198-515
               

               
Cow position:
               
chr1:13637487-13637821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 207
               

               
Conread position:
               
199-515
               

               
Cow position:
               
chr1:19516219-19516552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
51, 105
               

               
Conread position:
               
199-515
               

               
Cow position:
               
chr1:95057221-95056907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
40, 124
               

               
Conread position:
               
199-515
               

               
Cow position:
               
chr1:98461456-98461146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
18, 34
               

               
Conread position:
               
200-362
               

               
Cow position:
               
chr1:44269256-44269096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
81, 23
               

               
Conread position:
               
201-332
               

               
Cow position:
               
chr1:30406247-30406118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
41, 22
               

               
Conread position:
               
201-339
               

               
Cow position:
               
chr1:28354720-28354585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
122, 41
               

               
Conread position:
               
201-447
               

               
Cow position:
               
chr1:37124302-37124045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
37, 49
               

               
Conread position:
               
201-515
               

               
Cow position:
               
chr1:49433086-49433409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
47, 198
               

               
Conread position:
               
202-515
               

               
Cow position:
               
chr1:31348261-31348589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
51, 183
               

               
Conread position:
               
202-515
               

               
Cow position:
               
chr1:96276879-96277203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 205
               

               
Conread position:
               
205-506
               

               
Cow position:
               
chr1:57297652-57297334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
47, 10
               

               
Conread position:
               
206-320
               

               
Cow position:
               
chr1:51794497-51794612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
206-505
               

               
Cow position:
               
chr1:48581300-48580992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
39, 73
               

               
Conread position:
               
207-332
               

               
Cow position:
               
chr1:31628007-31627887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
208-515
               

               
Cow position:
               
chr1:24534093-24534401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
39, 185
               

               
Conread position:
               
209-347
               

               
Cow position:
               
chr1:21957387-21957524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
209-509
               

               
Cow position:
               
chr1:53458865-53458554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 18
               

               
Conread position:
               
211-515
               

               
Cow position:
               
chr1:52039798-52039488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 232
               

               
Conread position:
               
212-496
               

               
Cow position:
               
chr1:93810582-93810300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
108, 11
               

               
Conread position:
               
213-467
               

               
Cow position:
               
chr1:51044145-51044406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
33, 84
               

               
Conread position:
               
216-365
               

               
Cow position:
               
chr1:69185579-69185720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
216-395
               

               
Cow position:
               
chr1:95683219-95683406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
217-328
               

               
Cow position:
               
chr1:72812008-72811903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
217-477
               

               
Cow position:
               
chr1:3352547-3352804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
11, 34
               

               
Conread position:
               
217-515
               

               
Cow position:
               
chr1:36875180-36874866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 112
               

               
Conread position:
               
218-340
               

               
Cow position:
               
chr1:4512137-4512010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
218-389
               

               
Cow position:
               
chr1:19962207-19962030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
219-508
               

               
Cow position:
               
chr1:86073750-86073453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
30, 133
               

               
Conread position:
               
221-390
               

               
Cow position:
               
chr1:3762310-3762479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
27, 115
               

               
Conread position:
               
221-477
               

               
Cow position:
               
chr1:32001167-32001431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
28, 104
               

               
Conread position:
               
224-515
               

               
Cow position:
               
chr1:84241025-84240747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
80, 23
               

               
Conread position:
               
225-515
               

               
Cow position:
               
chr1:100393016-100393309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
9, 163
               

               
Conread position:
               
226-459
               

               
Cow position:
               
chr1:80841789-80841560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
97, 23
               

               
Conread position:
               
226-503
               

               
Cow position:
               
chr1:41047157-41047436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
25, 52
               

               
Conread position:
               
227-515
               

               
Cow position:
               
chr1:89341832-89342143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
228-515
               

               
Cow position:
               
chr1:93044162-93043881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 98
               

               
Conread position:
               
230-463
               

               
Cow position:
               
chr1:45670773-45670542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
21, 159
               

               
Conread position:
               
230-505
               

               
Cow position:
               
chr1:85549939-85550216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
95, 12
               

               
Conread position:
               
232-388
               

               
Cow position:
               
chr1:40935626-40935788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 7
               

               
Conread position:
               
232-515
               

               
Cow position:
               
chr1:70312653-70312953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
112, 178
               

               
Conread position:
               
233-339
               

               
Cow position:
               
chr1:39708403-39708295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
17, 98
               

               
Conread position:
               
233-514
               

               
Cow position:
               
chr1:74928024-74927733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
16, 172
               

               
Conread position:
               
233-515
               

               
Cow position:
               
chr1:79844603-79844318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 145
               

               
Conread position:
               
234-505
               

               
Cow position:
               
chr1:42545644-42545925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
87, 22
               

               
Conread position:
               
234-515
               

               
Cow position:
               
chr1:86579100-86578802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
234-515
               

               
Cow position:
               
chr1:93554971-93554695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
88, 15
               

               
Conread position:
               
235-515
               

               
Cow position:
               
chr1:97696878-97696592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
118, 14
               

               
Conread position:
               
236-445
               

               
Cow position:
               
chr1:43311898-43312105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
86, 20
               

               
Conread position:
               
236-471
               

               
Cow position:
               
chr1:99793684-99793437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
236-505
               

               
Cow position:
               
chr1:39068823-39069093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
80, 12
               

               
Conread position:
               
236-505
               

               
Cow position:
               
chr1:44768980-44769251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
236-514
               

               
Cow position:
               
chr1:74822587-74822308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 167
               

               
Conread position:
               
236-515
               

               
Cow position:
               
chr1:19885518-19885240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
15, 114
               

               
Conread position:
               
236-515
               

               
Cow position:
               
chr1:27380587-27380326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 11
               

               
Conread position:
               
237-346
               

               
Cow position:
               
chr1:3061424-3061534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
237-373
               

               
Cow position:
               
chr1:97750485-97750625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
237-398
               

               
Cow position:
               
chr1:98708757-98708605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
237-405
               

               
Cow position:
               
chr1:33775514-33775682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 19
               

               
Conread position:
               
237-411
               

               
Cow position:
               
chr1:816278-816453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
237-413
               

               
Cow position:
               
chr1:808684-808867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 181
               

               
Conread position:
               
237-417
               

               
Cow position:
               
chr1:49153448-49153268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
117, 11
               

               
Conread position:
               
237-420
               

               
Cow position:
               
chr1:57091110-57090925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
86, 13
               

               
Conread position:
               
237-427
               

               
Cow position:
               
chr1:84768745-84768936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
14, 137
               

               
Conread position:
               
237-428
               

               
Cow position:
               
chr1:60901207-60901014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
14, 87
               

               
Conread position:
               
237-429
               

               
Cow position:
               
chr1:76657933-76658140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
237-434
               

               
Cow position:
               
chr1:68672468-68672665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
14, 92
               

               
Conread position:
               
237-434
               

               
Cow position:
               
chr1:86912572-86912373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
86, 20
               

               
Conread position:
               
237-435
               

               
Cow position:
               
chr1:98576179-98575979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
92, 12
               

               
Conread position:
               
237-448
               

               
Cow position:
               
chr1:50992066-50991853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
86, 157
               

               
Conread position:
               
237-469
               

               
Cow position:
               
chr1:95153356-95153117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 116
               

               
Conread position:
               
237-473
               

               
Cow position:
               
chr1:37886680-37886916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
167, 12
               

               
Conread position:
               
237-474
               

               
Cow position:
               
chr1:77232446-77232674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
86, 12
               

               
Conread position:
               
237-476
               

               
Cow position:
               
chr1:78697639-78697878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
14, 5
               

               
Conread position:
               
237-477
               

               
Cow position:
               
chr1:67688451-67688691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
84, 12
               

               
Conread position:
               
237-478
               

               
Cow position:
               
chr1:81580311-81580065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
14, 209
               

               
Conread position:
               
237-486
               

               
Cow position:
               
chr1:98512060-98511808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
14, 43
               

               
Conread position:
               
237-489
               

               
Cow position:
               
chr1:80422406-80422154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 91
               

               
Conread position:
               
237-491
               

               
Cow position:
               
chr1:45553111-45553369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 12
               

               
Conread position:
               
237-503
               

               
Cow position:
               
chr1:81613522-81613253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 5
               

               
Conread position:
               
237-504
               

               
Cow position:
               
chr1:83748075-83747809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
88, 83
               

               
Conread position:
               
237-505
               

               
Cow position:
               
chr1:77880599-77880874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
17, 93
               

               
Conread position:
               
237-509
               

               
Cow position:
               
chr1:53308262-53308531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
89, 12
               

               
Conread position:
               
237-512
               

               
Cow position:
               
chr1:48730699-48730969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
85, 115
               

               
Conread position:
               
237-513
               

               
Cow position:
               
chr1:47233344-47233625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 160
               

               
Conread position:
               
237-513
               

               
Cow position:
               
chr1:52956385-52956107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
17, 66
               

               
Conread position:
               
237-513
               

               
Cow position:
               
chr1:53671616-53671884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
14, 92
               

               
Conread position:
               
237-513
               

               
Cow position:
               
chr1:98551853-98551570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
237-514
               

               
Cow position:
               
chr1:3882325-3882612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 161
               

               
Conread position:
               
237-515
               

               
Cow position:
               
chr1:3138047-3137779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
237-515
               

               
Cow position:
               
chr1:3166944-3167217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 21
               

               
Conread position:
               
237-515
               

               
Cow position:
               
chr1:3962554-3962840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
82, 144
               

               
Conread position:
               
237-515
               

               
Cow position:
               
chr1:5580189-5579911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
14, 37
               

               
Conread position:
               
237-515
               

               
Cow position:
               
chr1:23512525-23512803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
10, 52
               

               
Conread position:
               
237-515
               

               
Cow position:
               
chr1:57900590-57900887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
14, 185
               

               
Conread position:
               
237-515
               

               
Cow position:
               
chr1:62036935-62036656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 144
               

               
Conread position:
               
237-515
               

               
Cow position:
               
chr1:76019564-76019839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
148, 64
               

               
Conread position:
               
237-515
               

               
Cow position:
               
chr1:81913023-81913296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 12
               

               
Conread position:
               
237-515
               

               
Cow position:
               
chr1:84255901-84255610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
237-515
               

               
Cow position:
               
chr1:85162413-85162692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 201
               

               
Conread position:
               
237-515
               

               
Cow position:
               
chr1:90868313-90868587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
237-515
               

               
Cow position:
               
chr1:92369868-92369584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 46
               

               
Conread position:
               
238-356
               

               
Cow position:
               
chr1:84288535-84288414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
238-368
               

               
Cow position:
               
chr1:83783798-83783931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
238-388
               

               
Cow position:
               
chr1:8670907-8670752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
238-412
               

               
Cow position:
               
chr1:69481817-69481994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
13, 26
               

               
Conread position:
               
238-477
               

               
Cow position:
               
chr1:7023252-7023010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 11
               

               
Conread position:
               
238-505
               

               
Cow position:
               
chr1:34300418-34300687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
12, 180
               

               
Conread position:
               
238-505
               

               
Cow position:
               
chr1:69264939-69264677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
84, 11
               

               
Conread position:
               
238-508
               

               
Cow position:
               
chr1:90975956-90976228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
23, 11
               

               
Conread position:
               
238-512
               

               
Cow position:
               
chr1:91874784-91875053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 78
               

               
Conread position:
               
238-514
               

               
Cow position:
               
chr1:98413905-98413619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 215
               

               
Conread position:
               
238-515
               

               
Cow position:
               
chr1:4027994-4027717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
91, 11
               

               
Conread position:
               
239-389
               

               
Cow position:
               
chr1:54157428-54157272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
239-417
               

               
Cow position:
               
chr1:95974531-95974347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
239-513
               

               
Cow position:
               
chr1:98360274-98360551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
155, 12
               

               
Conread position:
               
239-514
               

               
Cow position:
               
chr1:36932285-36932010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
88, 82
               

               
Conread position:
               
239-515
               

               
Cow position:
               
chr1:51968595-51968313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
5, 122
               

               
Conread position:
               
239-515
               

               
Cow position:
               
chr1:84910518-84910775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
19, 11
               

               
Conread position:
               
240-364
               

               
Cow position:
               
chr1:53640843-53640718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
240-385
               

               
Cow position:
               
chr1:45478732-45478877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 89
               

               
Conread position:
               
240-396
               

               
Cow position:
               
chr1:83463713-83463557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
10, 39
               

               
Conread position:
               
240-427
               

               
Cow position:
               
chr1:99221225-99221413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
10, 24
               

               
Conread position:
               
240-449
               

               
Cow position:
               
chr1:96947590-96947799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
19, 71
               

               
Conread position:
               
240-479
               

               
Cow position:
               
chr1:72356486-72356246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
83, 109
               

               
Conread position:
               
240-499
               

               
Cow position:
               
chr1:71253425-71253685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 149
               

               
Conread position:
               
240-500
               

               
Cow position:
               
chr1:40530971-40531250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
11, 95
               

               
Conread position:
               
240-505
               

               
Cow position:
               
chr1:100800482-100800218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
11, 24
               

               
Conread position:
               
240-515
               

               
Cow position:
               
chr1:52995155-52994879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
43, 9
               

               
Conread position:
               
240-515
               

               
Cow position:
               
chr1:85647651-85647930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 41
               

               
Conread position:
               
240-515
               

               
Cow position:
               
chr1:96136597-96136339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
11, 44
               

               
Conread position:
               
240-516
               

               
Cow position:
               
chr1:18780198-18780483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 221
               

               
Conread position:
               
241-458
               

               
Cow position:
               
chr1:5155093-5155308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
82, 16
               

               
Conread position:
               
241-478
               

               
Cow position:
               
chr1:6752101-6752339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
17, 158
               

               
Conread position:
               
241-515
               

               
Cow position:
               
chr1:5135579-5135841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
9, 130
               

               
Conread position:
               
242-328
               

               
Cow position:
               
chr1:45873941-45874028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
88
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
242-484
               

               
Cow position:
               
chr1:68845041-68845274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
77, 136
               

               
Conread position:
               
242-503
               

               
Cow position:
               
chr1:94261664-94261406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
9, 32
               

               
Conread position:
               
243-462
               

               
Cow position:
               
chr1:30417922-30418133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
193, 6
               

               
Conread position:
               
243-491
               

               
Cow position:
               
chr1:3789942-3790190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
8, 27
               

               
Conread position:
               
243-515
               

               
Cow position:
               
chr1:28177132-28176855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
8, 29
               

               
Conread position:
               
243-515
               

               
Cow position:
               
chr1:83582805-83583082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 233
               

               
Conread position:
               
244-432
               

               
Cow position:
               
chr1:67646367-67646165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
244-504
               

               
Cow position:
               
chr1:49796118-49795869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
175, 99
               

               
Conread position:
               
244-515
               

               
Cow position:
               
chr1:41252285-41252546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
83, 5
               

               
Conread position:
               
245-515
               

               
Cow position:
               
chr1:77683475-77683209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
77, 12
               

               
Conread position:
               
246-511
               

               
Cow position:
               
chr1:100706250-100705985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
81, 94
               

               
Conread position:
               
247-400
               

               
Cow position:
               
chr1:83618481-83618641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
247-504
               

               
Cow position:
               
chr1:75933389-75933135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
162, 102
               

               
Conread position:
               
248-500
               

               
Cow position:
               
chr1:44125516-44125780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
249-400
               

               
Cow position:
               
chr1:83459306-83459456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
145, 31
               

               
Conread position:
               
249-456
               

               
Cow position:
               
chr1:4581210-4581416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
77, 11
               

               
Conread position:
               
249-500
               

               
Cow position:
               
chr1:98594686-98594434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
170, 84
               

               
Conread position:
               
249-504
               

               
Cow position:
               
chr1:8349203-8349454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
19, 85
               

               
Conread position:
               
249-509
               

               
Cow position:
               
chr1:4032753-4032483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
73, 98
               

               
Conread position:
               
249-515
               

               
Cow position:
               
chr1:39509937-39510198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 134
               

               
Conread position:
               
249-515
               

               
Cow position:
               
chr1:91811900-91811639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
9, 86
               

               
Conread position:
               
251-386
               

               
Cow position:
               
chr1:31855128-31855266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
251-407
               

               
Cow position:
               
chr1:42537203-42537363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
70, 34
               

               
Conread position:
               
251-437
               

               
Cow position:
               
chr1:59147226-59147412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
96, 68
               

               
Conread position:
               
251-500
               

               
Cow position:
               
chr1:89350084-89349829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
251-505
               

               
Cow position:
               
chr1:68253714-68253453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
251-515
               

               
Cow position:
               
chr1:16961893-16962158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
252-515
               

               
Cow position:
               
chr1:76470761-76470504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
101, 57
               

               
Conread position:
               
252-515
               

               
Cow position:
               
chr1:88618714-88618449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
74, 144
               

               
Conread position:
               
252-515
               

               
Cow position:
               
chr1:88652754-88652482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 154
               

               
Conread position:
               
253-444
               

               
Cow position:
               
chr1:48769919-48769726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
69, 140
               

               
Conread position:
               
253-521
               

               
Cow position:
               
chr1:30047486-30047747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
86, 55
               

               
Conread position:
               
254-479
               

               
Cow position:
               
chr1:43822515-43822288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
99, 66
               

               
Conread position:
               
254-515
               

               
Cow position:
               
chr1:89498062-89497817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
152, 40
               

               
Conread position:
               
255-515
               

               
Cow position:
               
chr1:37309404-37309659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
67, 136
               

               
Conread position:
               
256-477
               

               
Cow position:
               
chr1:61542805-61543028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
73, 134
               

               
Conread position:
               
256-502
               

               
Cow position:
               
chr1:26702092-26702343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
5, 67
               

               
Conread position:
               
256-515
               

               
Cow position:
               
chr1:85774571-85774315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
67, 149
               

               
Conread position:
               
257-433
               

               
Cow position:
               
chr1:30136241-30136419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
66, 87
               

               
Conread position:
               
257-513
               

               
Cow position:
               
chr1:80900232-80899965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
257-515
               

               
Cow position:
               
chr1:38401912-38401646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
257-515
               

               
Cow position:
               
chr1:42873837-42874095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
73, 167
               

               
Conread position:
               
257-515
               

               
Cow position:
               
chr1:91039061-91039321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
66, 81
               

               
Conread position:
               
258-515
               

               
Cow position:
               
chr1:82884283-82884538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 41
               

               
Conread position:
               
258-515
               

               
Cow position:
               
chr1:99614553-99614303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
84, 50
               

               
Conread position:
               
259-503
               

               
Cow position:
               
chr1:53425288-53425038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
72, 136
               

               
Conread position:
               
259-503
               

               
Cow position:
               
chr1:64250941-64251188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
116, 84
               

               
Conread position:
               
259-515
               

               
Cow position:
               
chr1:12978793-12978532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 132
               

               
Conread position:
               
259-515
               

               
Cow position:
               
chr1:60281484-60281222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
259-515
               

               
Cow position:
               
chr1:81868619-81868874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
67, 10
               

               
Conread position:
               
260-506
               

               
Cow position:
               
chr1:89230121-89230367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 196
               

               
Conread position:
               
260-515
               

               
Cow position:
               
chr1:7350658-7350394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
261-499
               

               
Cow position:
               
chr1:3720335-3720566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
69, 19
               

               
Conread position:
               
263-406
               

               
Cow position:
               
chr1:82556305-82556449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
263-469
               

               
Cow position:
               
chr1:19226950-19227157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
60, 141
               

               
Conread position:
               
263-501
               

               
Cow position:
               
chr1:92434106-92433870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
59, 20
               

               
Conread position:
               
263-508
               

               
Cow position:
               
chr1:20205134-20204886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
263-513
               

               
Cow position:
               
chr1:75142104-75141856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
59, 131
               

               
Conread position:
               
263-515
               

               
Cow position:
               
chr1:81355596-81355852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
60, 206
               

               
Conread position:
               
264-515
               

               
Cow position:
               
chr1:3456956-3456722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
155, 68
               

               
Conread position:
               
265-505
               

               
Cow position:
               
chr1:62291596-62291829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
153, 127
               

               
Conread position:
               
265-515
               

               
Cow position:
               
chr1:45288766-45289020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
62, 130
               

               
Conread position:
               
266-515
               

               
Cow position:
               
chr1:81563849-81563588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
269-514
               

               
Cow position:
               
chr1:20384522-20384767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
150, 65
               

               
Conread position:
               
271-386
               

               
Cow position:
               
chr1:80442842-80442724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 80
               

               
Conread position:
               
271-515
               

               
Cow position:
               
chr1:43703508-43703259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
58, 131
               

               
Conread position:
               
271-515
               

               
Cow position:
               
chr1:91800499-91800750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
276-515
               

               
Cow position:
               
chr1:89485674-89485428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
54, 233
               

               
Conread position:
               
277-515
               

               
Cow position:
               
chr1:90641121-90640880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
58, 39
               

               
Conread position:
               
278-501
               

               
Cow position:
               
chr1:5023670-5023890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
52, 107
               

               
Conread position:
               
279-515
               

               
Cow position:
               
chr1:4374246-4374487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
51, 117
               

               
Conread position:
               
282-515
               

               
Cow position:
               
chr1:68951713-68951479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
41, 33
               

               
Conread position:
               
282-515
               

               
Cow position:
               
chr1:101946626-101946855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
48, 114
               

               
Conread position:
               
286-505
               

               
Cow position:
               
chr1:26729797-26729586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
291-473
               

               
Cow position:
               
chr1:61560644-61560828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
39, 159
               

               
Conread position:
               
291-515
               

               
Cow position:
               
chr1:6788204-6788434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
39, 111
               

               
Conread position:
               
292-515
               

               
Cow position:
               
chr1:55135914-55135685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
38, 103
               

               
Conread position:
               
293-509
               

               
Cow position:
               
chr1:87440544-87440326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
34, 12
               

               
Conread position:
               
294-427
               

               
Cow position:
               
chr1:80904843-80904708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
296-503
               

               
Cow position:
               
chr1:79278373-79278583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 89
               

               
Conread position:
               
296-515
               

               
Cow position:
               
chr1:51654498-51654262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
34, 115
               

               
Conread position:
               
302-514
               

               
Cow position:
               
chr1:1991350-1991568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
45, 156
               

               
Conread position:
               
306-505
               

               
Cow position:
               
chr1:85301481-85301280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
24, 55
               

               
Conread position:
               
308-513
               

               
Cow position:
               
chr1:24235457-24235663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
22, 88
               

               
Conread position:
               
309-515
               

               
Cow position:
               
chr1:24445567-24445775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
26, 86
               

               
Conread position:
               
317-515
               

               
Cow position:
               
chr1:24413502-24413295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
321-515
               

               
Cow position:
               
chr1:99136384-99136579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
98, 38
               

               
Conread position:
               
322-515
               

               
Cow position:
               
chr1:70028625-70028434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
323-515
               

               
Cow position:
               
chr1:62920212-62920019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
71, 139
               

               
Conread position:
               
324-515
               

               
Cow position:
               
chr1:44155293-44155103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
12, 96
               

               
Conread position:
               
324-515
               

               
Cow position:
               
chr1:45535750-45535557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
84, 75
               

               
Conread position:
               
324-515
               

               
Cow position:
               
chr1:99039312-99039501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
93, 76
               

               
Conread position:
               
332-515
               

               
Cow position:
               
chr1:99061887-99062070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 60
               

               
Conread position:
               
344-505
               

               
Cow position:
               
chr1:40069259-40069104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
75, 50
               

               
Conread position:
               
347-515
               

               
Cow position:
               
chr1:12595881-12596052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
351-506
               

               
Cow position:
               
chr1:77099531-77099688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
351-512
               

               
Cow position:
               
chr1:71946354-71946517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
42, 135
               

               
Conread position:
               
351-513
               

               
Cow position:
               
chr1:29671505-29671667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
68, 58
               

               
Conread position:
               
351-515
               

               
Cow position:
               
chr1:1403465-1403627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
68, 42
               

               
Conread position:
               
351-515
               

               
Cow position:
               
chr1:98563178-98563015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
22, 28
               

               
Conread position:
               
352-514
               

               
Cow position:
               
chr1:94404229-94404065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
67, 46
               

               
Conread position:
               
352-515
               

               
Cow position:
               
chr1:1802156-1801991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
61, 70
               

               
Conread position:
               
352-515
               

               
Cow position:
               
chr1:33811945-33811781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 47
               

               
Conread position:
               
352-515
               

               
Cow position:
               
chr1:64962652-64962817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
352-515
               

               
Cow position:
               
chr1:100812560-100812718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
59, 45
               

               
Conread position:
               
355-515
               

               
Cow position:
               
chr1:22448569-22448735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
357-515
               

               
Cow position:
               
chr1:3661054-3661202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
358-515
               

               
Cow position:
               
chr1:5872958-5873120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
362-515
               

               
Cow position:
               
chr1:82443449-82443605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
55, 45
               

               
Conread position:
               
375-515
               

               
Cow position:
               
chr1:102113110-102113253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
380-513
               

               
Cow position:
               
chr1:3035001-3035139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
380-515
               

               
Cow position:
               
chr1:89083096-89082962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
39, 20
               

               
Conread position:
               
382-515
               

               
Cow position:
               
chr1:87216446-87216313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 17
               
Show alignments to all cow chromosomes.