Non-Coding RNA Search

Cow genome map


           Conread name:
           Ova1-OVRM10096D07
        

               Conread position:
               108-331
               

               Cow position:
               chr28:10298112-10297889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               48, 101
               

               Conread position:
               111-332
               

               Cow position:
               chr28:117489-117726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               115-476
               

               Cow position:
               chr28:34247785-34248133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               197, 56
               

               Conread position:
               124-328
               

               Cow position:
               chr28:4936988-4937201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               146
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               132-500
               

               Cow position:
               chr28:6091597-6091229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               255
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               191, 39
               

               Conread position:
               134-513
               

               Cow position:
               chr28:12964819-12964423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 22
               

               Conread position:
               134-515
               

               Cow position:
               chr28:30937441-30937812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 65
               

               Conread position:
               137-325
               

               Cow position:
               chr28:16856868-16857063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               11, 19
               

               Conread position:
               140-509
               

               Cow position:
               chr28:10863565-10863925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 63
               

               Conread position:
               141-317
               

               Cow position:
               chr28:21263388-21263209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               142-308
               

               Cow position:
               chr28:11814845-11815015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               6, 32
               

               Conread position:
               143-301
               

               Cow position:
               chr28:8164983-8165148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               123
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               107, 31
               

               Conread position:
               145-307
               

               Cow position:
               chr28:7808859-7808701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               146-335
               

               Cow position:
               chr28:11827921-11827719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               146-407
               

               Cow position:
               chr28:17740054-17739785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 23
               

               Conread position:
               146-447
               

               Cow position:
               chr28:5138770-5139078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 14
               

               Conread position:
               146-513
               

               Cow position:
               chr28:20313494-20313125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               251
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               176, 36
               

               Conread position:
               148-391
               

               Cow position:
               chr28:7131865-7132111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 24
               

               Conread position:
               149-363
               

               Cow position:
               chr28:19994720-19994943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               96, 188
               

               Conread position:
               150-515
               

               Cow position:
               chr28:2960606-2960981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 37
               

               Conread position:
               150-515
               

               Cow position:
               chr28:8291639-8291286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               250
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               13, 125
               

               Conread position:
               151-326
               

               Cow position:
               chr28:10888848-10888680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               129
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               28, 15
               

               Conread position:
               151-384
               

               Cow position:
               chr28:5232161-5231920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               45, 19
               

               Conread position:
               151-503
               

               Cow position:
               chr28:33884627-33884271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 152
               

               Conread position:
               152-329
               

               Cow position:
               chr28:4027247-4027423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               82, 20
               

               Conread position:
               152-491
               

               Cow position:
               chr28:1099458-1099786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               267, 17
               

               Conread position:
               153-327
               

               Cow position:
               chr28:3423998-3423819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               91, 19
               

               Conread position:
               153-408
               

               Cow position:
               chr28:10203334-10203079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               21, 14
               

               Conread position:
               153-515
               

               Cow position:
               chr28:14998289-14997916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 123
               

               Conread position:
               153-515
               

               Cow position:
               chr28:16918952-16919307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 234
               

               Conread position:
               153-515
               

               Cow position:
               chr28:29988886-29989262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 123
               

               Conread position:
               154-310
               

               Cow position:
               chr28:3257212-3257047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               154-324
               

               Cow position:
               chr28:4783388-4783222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               123
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               154-325
               

               Cow position:
               chr28:4866357-4866529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               143
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               20, 6
               

               Conread position:
               154-325
               

               Cow position:
               chr28:17620135-17620317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               132
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               22, 166
               

               Conread position:
               154-334
               

               Cow position:
               chr28:29500626-29500435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               85, 9
               

               Conread position:
               154-373
               

               Cow position:
               chr28:5236095-5235874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               175, 116
               

               Conread position:
               154-389
               

               Cow position:
               chr28:8304465-8304224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               154-393
               

               Cow position:
               chr28:5205471-5205244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               192
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               165, 18
               

               Conread position:
               154-429
               

               Cow position:
               chr28:3275687-3275429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               199
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               141, 22
               

               Conread position:
               154-492
               

               Cow position:
               chr28:7145022-7144662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               233
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               21, 131
               

               Conread position:
               154-515
               

               Cow position:
               chr28:15263495-15263870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               24, 132
               

               Conread position:
               155-373
               

               Cow position:
               chr28:18797527-18797313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               174, 15
               

               Conread position:
               156-328
               

               Cow position:
               chr28:10196651-10196824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               93, 81
               

               Conread position:
               156-331
               

               Cow position:
               chr28:16252191-16252366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               93, 20
               

               Conread position:
               156-390
               

               Cow position:
               chr28:11059710-11059477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               93, 107
               

               Conread position:
               156-397
               

               Cow position:
               chr28:5255090-5254843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 11
               

               Conread position:
               156-505
               

               Cow position:
               chr28:5224923-5224574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               60, 157
               

               Conread position:
               156-509
               

               Cow position:
               chr28:4159183-4158815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 265
               

               Conread position:
               156-514
               

               Cow position:
               chr28:11426329-11426690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 108
               

               Conread position:
               156-515
               

               Cow position:
               chr28:21868677-21868306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 247
               

               Conread position:
               156-515
               

               Cow position:
               chr28:24966605-24966243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 208
               

               Conread position:
               156-515
               

               Cow position:
               chr28:26982516-26982892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               263
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               19, 246
               

               Conread position:
               156-515
               

               Cow position:
               chr28:31841127-31841485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               257
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               33, 126
               

               Conread position:
               157-328
               

               Cow position:
               chr28:11305419-11305592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               93, 13
               

               Conread position:
               157-399
               

               Cow position:
               chr28:9705874-9705620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               157-456
               

               Cow position:
               chr28:7927381-7927084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               228
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               11, 31
               

               Conread position:
               157-515
               

               Cow position:
               chr28:616587-616235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               253
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               163, 79
               

               Conread position:
               158-433
               

               Cow position:
               chr28:3410775-3411057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 12
               

               Conread position:
               160-313
               

               Cow position:
               chr28:8384071-8383917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               29, 63
               

               Conread position:
               160-332
               

               Cow position:
               chr28:15362794-15362616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               160-411
               

               Cow position:
               chr28:10964623-10964379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               26, 93
               

               Conread position:
               160-515
               

               Cow position:
               chr28:4282274-4282637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               252
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               87, 238
               

               Conread position:
               161-328
               

               Cow position:
               chr28:8655953-8656125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               129
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               87, 15
               

               Conread position:
               163-326
               

               Cow position:
               chr28:11562029-11562203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               165-390
               

               Cow position:
               chr28:4006991-4006761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               72, 113
               

               Conread position:
               168-515
               

               Cow position:
               chr28:13289949-13290281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               252
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               9, 104
               

               Conread position:
               170-501
               

               Cow position:
               chr28:4089854-4090183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 158
               

               Conread position:
               171-346
               

               Cow position:
               chr28:26867950-26868128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               146
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               171-360
               

               Cow position:
               chr28:9109415-9109222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               164
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 102
               

               Conread position:
               171-391
               

               Cow position:
               chr28:18770291-18770060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               74, 31
               

               Conread position:
               171-411
               

               Cow position:
               chr28:4186107-4185858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               77, 196
               

               Conread position:
               171-483
               

               Cow position:
               chr28:12933532-12933850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               78, 32
               

               Conread position:
               171-515
               

               Cow position:
               chr28:3746401-3746056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 226
               

               Conread position:
               171-515
               

               Cow position:
               chr28:26615057-26614735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               254
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               37, 67
               

               Conread position:
               172-306
               

               Cow position:
               chr28:22170079-22170217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               172-308
               

               Cow position:
               chr28:12448422-12448290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               107
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               77, 30
               

               Conread position:
               172-309
               

               Cow position:
               chr28:16177453-16177314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               79, 26
               

               Conread position:
               172-310
               

               Cow position:
               chr28:5441694-5441839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               41, 143
               

               Conread position:
               172-313
               

               Cow position:
               chr28:2821464-2821314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               113
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               172-313
               

               Cow position:
               chr28:13174351-13174500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               112
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               172-318
               

               Cow position:
               chr28:2737324-2737467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               172-319
               

               Cow position:
               chr28:11398591-11398747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               172-319
               

               Cow position:
               chr28:24238281-24238427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               128
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               172-321
               

               Cow position:
               chr28:27787767-27787614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               172-324
               

               Cow position:
               chr28:6322021-6321862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               123
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               59, 8
               

               Conread position:
               172-325
               

               Cow position:
               chr28:24698896-24698734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               123
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               65, 111
               

               Conread position:
               172-327
               

               Cow position:
               chr28:34830357-34830196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               74, 31
               

               Conread position:
               172-328
               

               Cow position:
               chr28:5770062-5769908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               172-328
               

               Cow position:
               chr28:8681234-8681389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               172-328
               

               Cow position:
               chr28:10252712-10252876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               172-328
               

               Cow position:
               chr28:10763091-10762935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               131
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               172-328
               

               Cow position:
               chr28:10959002-10958843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               126
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               73, 112
               

               Conread position:
               172-328
               

               Cow position:
               chr28:11411336-11411493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               172-328
               

               Cow position:
               chr28:16200537-16200702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               172-328
               

               Cow position:
               chr28:16767406-16767555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               121
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               172-328
               

               Cow position:
               chr28:17943927-17943771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               128
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               79, 31
               

               Conread position:
               172-328
               

               Cow position:
               chr28:22085343-22085501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               77, 8
               

               Conread position:
               172-329
               

               Cow position:
               chr28:3678562-3678402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               139
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               172-330
               

               Cow position:
               chr28:27445372-27445533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               76, 152
               

               Conread position:
               172-331
               

               Cow position:
               chr28:9677866-9677707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               117
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               78, 30
               

               Conread position:
               172-331
               

               Cow position:
               chr28:21744915-21744753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               128
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               172-332
               

               Cow position:
               chr28:18791237-18791076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               64, 94
               

               Conread position:
               172-335
               

               Cow position:
               chr28:8936351-8936181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               72, 101
               

               Conread position:
               172-336
               

               Cow position:
               chr28:4588517-4588349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               72, 18
               

               Conread position:
               172-337
               

               Cow position:
               chr28:2151237-2151411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               79, 30
               

               Conread position:
               172-338
               

               Cow position:
               chr28:26574603-26574441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               172-340
               

               Cow position:
               chr28:3759200-3759019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               172-340
               

               Cow position:
               chr28:20281951-20281784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               77, 24
               

               Conread position:
               172-346
               

               Cow position:
               chr28:11019604-11019773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               156, 49
               

               Conread position:
               172-347
               

               Cow position:
               chr28:2777733-2777549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               172-361
               

               Cow position:
               chr28:10891123-10891303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               87, 49
               

               Conread position:
               172-365
               

               Cow position:
               chr28:24996415-24996612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               42, 99
               

               Conread position:
               172-366
               

               Cow position:
               chr28:4876641-4876443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               159
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               172-366
               

               Cow position:
               chr28:7557524-7557734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               172-366
               

               Cow position:
               chr28:21207174-21207368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               116, 78
               

               Conread position:
               172-368
               

               Cow position:
               chr28:26784053-26784243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               158, 57
               

               Conread position:
               172-368
               

               Cow position:
               chr28:30902324-30902124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               169
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               172-371
               

               Cow position:
               chr28:16214682-16214878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               157, 76
               

               Conread position:
               172-372
               

               Cow position:
               chr28:5805865-5805665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               164
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               79, 30
               

               Conread position:
               172-373
               

               Cow position:
               chr28:4364620-4364829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               15, 33
               

               Conread position:
               172-373
               

               Cow position:
               chr28:8396528-8396328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               169
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 19
               

               Conread position:
               172-373
               

               Cow position:
               chr28:32358307-32358101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               78, 183
               

               Conread position:
               172-381
               

               Cow position:
               chr28:29850619-29850830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               173
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 30
               

               Conread position:
               172-385
               

               Cow position:
               chr28:4101715-4101501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               171
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               55, 65
               

               Conread position:
               172-388
               

               Cow position:
               chr28:11743624-11743841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               5, 45
               

               Conread position:
               172-389
               

               Cow position:
               chr28:17680828-17680599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               172-390
               

               Cow position:
               chr28:4823804-4823581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               67, 101
               

               Conread position:
               172-390
               

               Cow position:
               chr28:13356163-13356391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               78, 168
               

               Conread position:
               172-393
               

               Cow position:
               chr28:20174041-20173810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               83, 222
               

               Conread position:
               172-394
               

               Cow position:
               chr28:13370936-13371167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               71, 164
               

               Conread position:
               172-396
               

               Cow position:
               chr28:12991338-12991106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 77
               

               Conread position:
               172-396
               

               Cow position:
               chr28:21008468-21008697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               88, 32
               

               Conread position:
               172-404
               

               Cow position:
               chr28:10615747-10615983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               173
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               76, 30
               

               Conread position:
               172-406
               

               Cow position:
               chr28:2279399-2279627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               175
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               144, 0
               

               Conread position:
               172-407
               

               Cow position:
               chr28:17948914-17949154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               172-408
               

               Cow position:
               chr28:11816481-11816707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               187
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               153, 32
               

               Conread position:
               172-415
               

               Cow position:
               chr28:777879-777625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               172-417
               

               Cow position:
               chr28:3726005-3726262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               191
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               37, 239
               

               Conread position:
               172-418
               

               Cow position:
               chr28:11987366-11987122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               189
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               79, 30
               

               Conread position:
               172-418
               

               Cow position:
               chr28:12055604-12055360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               189
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               79, 30
               

               Conread position:
               172-423
               

               Cow position:
               chr28:133877-134126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               70, 30
               

               Conread position:
               172-423
               

               Cow position:
               chr28:33322655-33322398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               77, 26
               

               Conread position:
               172-427
               

               Cow position:
               chr28:3445276-3445542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 152
               

               Conread position:
               172-429
               

               Cow position:
               chr28:7618957-7619214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 45
               

               Conread position:
               172-434
               

               Cow position:
               chr28:4013286-4013020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 234
               

               Conread position:
               172-434
               

               Cow position:
               chr28:11348629-11348363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               42, 117
               

               Conread position:
               172-434
               

               Cow position:
               chr28:12598539-12598270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               79, 200
               

               Conread position:
               172-448
               

               Cow position:
               chr28:7350853-7350575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 27
               

               Conread position:
               172-468
               

               Cow position:
               chr28:4182204-4181900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 58
               

               Conread position:
               172-471
               

               Cow position:
               chr28:20759490-20759801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               228
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               68, 143
               

               Conread position:
               172-477
               

               Cow position:
               chr28:3484789-3484466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               64, 159
               

               Conread position:
               172-477
               

               Cow position:
               chr28:5200030-5199711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               65, 229
               

               Conread position:
               172-477
               

               Cow position:
               chr28:5577735-5577414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 42
               

               Conread position:
               172-477
               

               Cow position:
               chr28:22813451-22813154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               172-480
               

               Cow position:
               chr28:23296522-23296209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               212
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               76, 180
               

               Conread position:
               172-484
               

               Cow position:
               chr28:10588830-10589138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 70
               

               Conread position:
               172-492
               

               Cow position:
               chr28:12672258-12672587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               227
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               69, 165
               

               Conread position:
               172-495
               

               Cow position:
               chr28:11346286-11346614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 184
               

               Conread position:
               172-498
               

               Cow position:
               chr28:8140687-8140350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 37
               

               Conread position:
               172-500
               

               Cow position:
               chr28:662303-661976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               232
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               111, 74
               

               Conread position:
               172-500
               

               Cow position:
               chr28:8787742-8787405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 137
               

               Conread position:
               172-500
               

               Cow position:
               chr28:22332732-22332401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 15
               

               Conread position:
               172-500
               

               Cow position:
               chr28:34230434-34230096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               75, 241
               

               Conread position:
               172-503
               

               Cow position:
               chr28:7008778-7009112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 214
               

               Conread position:
               172-504
               

               Cow position:
               chr28:19262381-19262727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               244
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               69, 210
               

               Conread position:
               172-504
               

               Cow position:
               chr28:30293383-30293729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               232
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               72, 26
               

               Conread position:
               172-505
               

               Cow position:
               chr28:5204388-5204055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 31
               

               Conread position:
               172-505
               

               Cow position:
               chr28:26719533-26719212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 69
               

               Conread position:
               172-505
               

               Cow position:
               chr28:34877769-34878111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               236
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               62, 175
               

               Conread position:
               172-509
               

               Cow position:
               chr28:10845305-10844975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               232
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               115, 46
               

               Conread position:
               172-509
               

               Cow position:
               chr28:16369886-16370219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 49
               

               Conread position:
               172-512
               

               Cow position:
               chr28:23724266-23724601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               237
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               140, 76
               

               Conread position:
               172-513
               

               Cow position:
               chr28:3492584-3492932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 159
               

               Conread position:
               172-513
               

               Cow position:
               chr28:28765700-28766053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               242
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               68, 26
               

               Conread position:
               172-514
               

               Cow position:
               chr28:4881046-4881393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               255
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               77, 22
               

               Conread position:
               172-514
               

               Cow position:
               chr28:10669790-10669424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               249
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               93, 249
               

               Conread position:
               172-514
               

               Cow position:
               chr28:23616608-23616259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               93, 205
               

               Conread position:
               172-515
               

               Cow position:
               chr28:4071161-4070820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 26
               

               Conread position:
               172-515
               

               Cow position:
               chr28:4643567-4643912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               246
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               61, 227
               

               Conread position:
               172-515
               

               Cow position:
               chr28:4809973-4809648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 26
               

               Conread position:
               172-515
               

               Cow position:
               chr28:4884050-4884412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               172-515
               

               Cow position:
               chr28:5074318-5074658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 79
               

               Conread position:
               172-515
               

               Cow position:
               chr28:5144311-5144671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               254
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               62, 232
               

               Conread position:
               172-515
               

               Cow position:
               chr28:5236392-5236748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               252
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               77, 239
               

               Conread position:
               172-515
               

               Cow position:
               chr28:5436883-5437237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 130
               

               Conread position:
               172-515
               

               Cow position:
               chr28:5684903-5684564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 103
               

               Conread position:
               172-515
               

               Cow position:
               chr28:8347937-8347581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 121
               

               Conread position:
               172-515
               

               Cow position:
               chr28:9636254-9636602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 225
               

               Conread position:
               172-515
               

               Cow position:
               chr28:10053129-10053485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 30
               

               Conread position:
               172-515
               

               Cow position:
               chr28:10606435-10606780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 46
               

               Conread position:
               172-515
               

               Cow position:
               chr28:10978041-10977717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 41
               

               Conread position:
               172-515
               

               Cow position:
               chr28:11422616-11422960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 31
               

               Conread position:
               172-515
               

               Cow position:
               chr28:11527056-11527408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               172-515
               

               Cow position:
               chr28:11585006-11585354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 77
               

               Conread position:
               172-515
               

               Cow position:
               chr28:11828756-11829087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 188
               

               Conread position:
               172-515
               

               Cow position:
               chr28:11884328-11884669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 29
               

               Conread position:
               172-515
               

               Cow position:
               chr28:13267972-13267636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               240
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               214, 78
               

               Conread position:
               172-515
               

               Cow position:
               chr28:14657919-14657551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               248
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               75, 200
               

               Conread position:
               172-515
               

               Cow position:
               chr28:16204127-16204478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 234
               

               Conread position:
               172-515
               

               Cow position:
               chr28:18934638-18934306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               228
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               113, 60
               

               Conread position:
               172-515
               

               Cow position:
               chr28:20124984-20124634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 64
               

               Conread position:
               172-515
               

               Cow position:
               chr28:21046386-21046717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               157, 78
               

               Conread position:
               172-515
               

               Cow position:
               chr28:21502585-21502245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               157, 36
               

               Conread position:
               172-515
               

               Cow position:
               chr28:21845154-21844810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 30
               

               Conread position:
               172-515
               

               Cow position:
               chr28:22371472-22371826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 30
               

               Conread position:
               172-515
               

               Cow position:
               chr28:23007539-23007883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 67
               

               Conread position:
               172-515
               

               Cow position:
               chr28:23460347-23459999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               241
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               75, 114
               

               Conread position:
               172-515
               

               Cow position:
               chr28:23793117-23793452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               248
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               92, 35
               

               Conread position:
               172-515
               

               Cow position:
               chr28:29416522-29416862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 78
               

               Conread position:
               172-516
               

               Cow position:
               chr28:1838199-1837843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               247
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               79, 157
               

               Conread position:
               173-301
               

               Cow position:
               chr28:5428556-5428686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               106
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               76, 27
               

               Conread position:
               173-313
               

               Cow position:
               chr28:7523213-7523360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               72, 112
               

               Conread position:
               173-328
               

               Cow position:
               chr28:7413865-7413700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               122
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               173-328
               

               Cow position:
               chr28:33032680-33032529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               114
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               173-331
               

               Cow position:
               chr28:2435836-2435994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               53, 9
               

               Conread position:
               173-393
               

               Cow position:
               chr28:24646785-24646566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               78, 25
               

               Conread position:
               173-417
               

               Cow position:
               chr28:2762374-2762145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               189
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               155, 59
               

               Conread position:
               173-476
               

               Cow position:
               chr28:9740660-9740356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 60
               

               Conread position:
               173-492
               

               Cow position:
               chr28:26152213-26151902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               216
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               70, 107
               

               Conread position:
               173-498
               

               Cow position:
               chr28:11079502-11079175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 50
               

               Conread position:
               173-503
               

               Cow position:
               chr28:3078494-3078818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               233
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               157, 49
               

               Conread position:
               173-504
               

               Cow position:
               chr28:33163274-33163602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 65
               

               Conread position:
               173-505
               

               Cow position:
               chr28:24672470-24672125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               69, 110
               

               Conread position:
               173-514
               

               Cow position:
               chr28:9285175-9285522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 154
               

               Conread position:
               173-515
               

               Cow position:
               chr28:657262-657598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               232
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               17, 108
               

               Conread position:
               173-515
               

               Cow position:
               chr28:2131740-2132068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 30
               

               Conread position:
               173-515
               

               Cow position:
               chr28:3023714-3024061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 85
               

               Conread position:
               173-515
               

               Cow position:
               chr28:25057158-25056823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 30
               

               Conread position:
               173-516
               

               Cow position:
               chr28:751430-751078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               251
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               72, 131
               

               Conread position:
               174-282
               

               Cow position:
               chr28:4375425-4375536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               112
               

               Alignm identity:
               99
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               174-307
               

               Cow position:
               chr28:18740295-18740430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               75, 93
               

               Conread position:
               174-319
               

               Cow position:
               chr28:32372437-32372295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               95, 68
               

               Conread position:
               174-328
               

               Cow position:
               chr28:5674073-5673916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               127
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               70, 103
               

               Conread position:
               174-328
               

               Cow position:
               chr28:16570005-16569846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               65, 110
               

               Conread position:
               174-328
               

               Cow position:
               chr28:19395064-19394912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               125
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               75, 33
               

               Conread position:
               174-331
               

               Cow position:
               chr28:5609717-5609879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               73, 105
               

               Conread position:
               174-331
               

               Cow position:
               chr28:32014986-32014822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               128
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               174-332
               

               Cow position:
               chr28:118815-118646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               174-335
               

               Cow position:
               chr28:17737949-17738120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               69, 109
               

               Conread position:
               174-337
               

               Cow position:
               chr28:2077702-2077533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               76, 166
               

               Conread position:
               174-339
               

               Cow position:
               chr28:10890541-10890708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               145
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               152, 75
               

               Conread position:
               174-368
               

               Cow position:
               chr28:6563693-6563900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               174-370
               

               Cow position:
               chr28:4163379-4163583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               73, 168
               

               Conread position:
               174-373
               

               Cow position:
               chr28:6283289-6283495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               151
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               79, 35
               

               Conread position:
               174-379
               

               Cow position:
               chr28:13048084-13048296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               74, 16
               

               Conread position:
               174-391
               

               Cow position:
               chr28:5630300-5630073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               73, 129
               

               Conread position:
               174-391
               

               Cow position:
               chr28:7964477-7964693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               101, 75
               

               Conread position:
               174-404
               

               Cow position:
               chr28:8827365-8827128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               72, 163
               

               Conread position:
               174-407
               

               Cow position:
               chr28:6975435-6975202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 75
               

               Conread position:
               174-468
               

               Cow position:
               chr28:13245765-13245463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               74, 182
               

               Conread position:
               174-473
               

               Cow position:
               chr28:6358209-6358517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               76, 185
               

               Conread position:
               174-474
               

               Cow position:
               chr28:31223356-31223674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               74, 166
               

               Conread position:
               174-477
               

               Cow position:
               chr28:3011066-3011384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               228
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               174-501
               

               Cow position:
               chr28:3449510-3449164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               245
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               75, 241
               

               Conread position:
               174-504
               

               Cow position:
               chr28:9426151-9426490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               244
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               67, 179
               

               Conread position:
               174-505
               

               Cow position:
               chr28:4307692-4308048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               174-505
               

               Cow position:
               chr28:19055218-19054876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               225
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               74, 139
               

               Conread position:
               174-511
               

               Cow position:
               chr28:9812484-9812138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               59, 228
               

               Conread position:
               174-514
               

               Cow position:
               chr28:7439440-7439097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               237
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               152, 90
               

               Conread position:
               174-514
               

               Cow position:
               chr28:7697778-7698129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               241
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               66, 168
               

               Conread position:
               174-515
               

               Cow position:
               chr28:4016724-4016389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 28
               

               Conread position:
               174-515
               

               Cow position:
               chr28:9100129-9099790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               119, 20
               

               Conread position:
               174-515
               

               Cow position:
               chr28:11866467-11866815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 233
               

               Conread position:
               174-515
               

               Cow position:
               chr28:12951617-12951279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               242
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               68, 168
               

               Conread position:
               174-515
               

               Cow position:
               chr28:30326900-30327240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               193, 77
               

               Conread position:
               174-515
               

               Cow position:
               chr28:30746537-30746877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 44
               

               Conread position:
               174-515
               

               Cow position:
               chr28:33036284-33036616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               75, 33
               

               Conread position:
               174-516
               

               Cow position:
               chr28:10495099-10495427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               240
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               63, 20
               

               Conread position:
               174-521
               

               Cow position:
               chr28:22571483-22571820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               245
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               228, 24
               

               Conread position:
               175-299
               

               Cow position:
               chr28:10140386-10140513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               105
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               69, 41
               

               Conread position:
               175-310
               

               Cow position:
               chr28:3727176-3727046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               103
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               175-313
               

               Cow position:
               chr28:7750821-7750960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               116
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               175-314
               

               Cow position:
               chr28:5188229-5188372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               109
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               175-314
               

               Cow position:
               chr28:8283502-8283649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               116
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               52, 58
               

               Conread position:
               175-326
               

               Cow position:
               chr28:13269918-13269770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               123
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               175-328
               

               Cow position:
               chr28:20968376-20968539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               175-328
               

               Cow position:
               chr28:26960713-26960868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               75, 91
               

               Conread position:
               175-329
               

               Cow position:
               chr28:8259832-8259668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               175-369
               

               Cow position:
               chr28:17727912-17728102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               175-373
               

               Cow position:
               chr28:19038818-19039026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               155
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               175-386
               

               Cow position:
               chr28:4877232-4877450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               67, 36
               

               Conread position:
               175-394
               

               Cow position:
               chr28:19217012-19216793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               153, 59
               

               Conread position:
               175-476
               

               Cow position:
               chr28:19564035-19564338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 88
               

               Conread position:
               175-499
               

               Cow position:
               chr28:5193523-5193187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               82, 33
               

               Conread position:
               175-502
               

               Cow position:
               chr28:5931544-5931216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               237
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               74, 30
               

               Conread position:
               175-509
               

               Cow position:
               chr28:22346222-22345876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 23
               

               Conread position:
               175-512
               

               Cow position:
               chr28:13474499-13474156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 213
               

               Conread position:
               175-513
               

               Cow position:
               chr28:22500306-22500632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 53
               

               Conread position:
               175-514
               

               Cow position:
               chr28:22133108-22132776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               62, 103
               

               Conread position:
               175-515
               

               Cow position:
               chr28:6059271-6059618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               231
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               49, 219
               

               Conread position:
               175-515
               

               Cow position:
               chr28:20409591-20409243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 147
               

               Conread position:
               175-515
               

               Cow position:
               chr28:22308844-22308499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               62, 108
               

               Conread position:
               175-515
               

               Cow position:
               chr28:23410134-23410475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 57
               

               Conread position:
               175-515
               

               Cow position:
               chr28:24082470-24082121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 203
               

               Conread position:
               176-328
               

               Cow position:
               chr28:6301283-6301122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               176-379
               

               Cow position:
               chr28:28501440-28501219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               176-390
               

               Cow position:
               chr28:11016603-11016388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               177
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               76, 115
               

               Conread position:
               176-515
               

               Cow position:
               chr28:7267750-7268085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 211
               

               Conread position:
               176-515
               

               Cow position:
               chr28:27218524-27218175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               239
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               65, 143
               

               Conread position:
               177-372
               

               Cow position:
               chr28:26826420-26826217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               67, 165
               

               Conread position:
               177-388
               

               Cow position:
               chr28:27721894-27721681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               145
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               89, 154
               

               Conread position:
               177-481
               

               Cow position:
               chr28:25129082-25128768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               177-495
               

               Cow position:
               chr28:5273229-5273567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               225
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               62, 106
               

               Conread position:
               177-514
               

               Cow position:
               chr28:22323457-22323119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               225
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               176, 93
               

               Conread position:
               177-514
               

               Cow position:
               chr28:30607999-30608330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               156, 29
               

               Conread position:
               177-515
               

               Cow position:
               chr28:3143687-3144041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 72
               

               Conread position:
               177-515
               

               Cow position:
               chr28:7512382-7512737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               9, 183
               

               Conread position:
               177-515
               

               Cow position:
               chr28:31649261-31648918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               242
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               74, 26
               

               Conread position:
               180-318
               

               Cow position:
               chr28:9070080-9069939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               180-360
               

               Cow position:
               chr28:20046737-20046559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               135, 62
               

               Conread position:
               180-503
               

               Cow position:
               chr28:24343548-24343233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               171, 61
               

               Conread position:
               180-506
               

               Cow position:
               chr28:13527393-13527063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               230
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               66, 22
               

               Conread position:
               180-509
               

               Cow position:
               chr28:5827126-5826800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               235
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               150, 68
               

               Conread position:
               180-515
               

               Cow position:
               chr28:4834648-4834991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 38
               

               Conread position:
               182-310
               

               Cow position:
               chr28:17060254-17060125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               105
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               182-331
               

               Cow position:
               chr28:7644937-7644778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               59, 118
               

               Conread position:
               182-448
               

               Cow position:
               chr28:4046037-4045770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               203
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               53, 183
               

               Conread position:
               182-505
               

               Cow position:
               chr28:5818031-5817702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               232
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               67, 52
               

               Conread position:
               182-515
               

               Cow position:
               chr28:9684144-9684466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 212
               

               Conread position:
               183-280
               

               Cow position:
               chr28:7558498-7558596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               100
               

               Alignm identity:
               86
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               68, 54
               

               Conread position:
               183-366
               

               Cow position:
               chr28:11451313-11451492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               133
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               147, 66
               

               Conread position:
               183-378
               

               Cow position:
               chr28:5711819-5712013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               59, 165
               

               Conread position:
               183-382
               

               Cow position:
               chr28:16879760-16879557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               165
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               183-432
               

               Cow position:
               chr28:26531089-26531344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               203
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               63, 19
               

               Conread position:
               183-434
               

               Cow position:
               chr28:2524134-2523874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               58, 19
               

               Conread position:
               183-515
               

               Cow position:
               chr28:3914897-3914560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 57
               

               Conread position:
               183-515
               

               Cow position:
               chr28:16346346-16346676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 14
               

               Conread position:
               183-515
               

               Cow position:
               chr28:21363932-21363597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               242
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               60, 19
               

               Conread position:
               184-313
               

               Cow position:
               chr28:3311030-3311168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               108
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               184-505
               

               Cow position:
               chr28:26743822-26743479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               242
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               60, 229
               

               Conread position:
               185-291
               

               Cow position:
               chr28:21673255-21673149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               107
               

               Alignm identity:
               86
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               185-318
               

               Cow position:
               chr28:4100574-4100708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               117
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               66, 23
               

               Conread position:
               185-329
               

               Cow position:
               chr28:4166765-4166614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               54, 17
               

               Conread position:
               185-335
               

               Cow position:
               chr28:8516000-8516149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               185-440
               

               Cow position:
               chr28:20397176-20397443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               20, 228
               

               Conread position:
               186-476
               

               Cow position:
               chr28:18369824-18370118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               209
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               53, 139
               

               Conread position:
               187-386
               

               Cow position:
               chr28:555684-555484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               138
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               142, 31
               

               Conread position:
               187-509
               

               Cow position:
               chr28:12430795-12430464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 93
               

               Conread position:
               188-325
               

               Cow position:
               chr28:26530680-26530821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               65, 137
               

               Conread position:
               190-514
               

               Cow position:
               chr28:16386341-16386658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               58, 21
               

               Conread position:
               190-515
               

               Cow position:
               chr28:16210916-16211241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 84
               

               Conread position:
               191-398
               

               Cow position:
               chr28:3741053-3740843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               168
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 58
               

               Conread position:
               191-515
               

               Cow position:
               chr28:10745399-10745060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               57, 165
               

               Conread position:
               193-372
               

               Cow position:
               chr28:9384109-9384293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               130
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               69, 58
               

               Conread position:
               194-515
               

               Cow position:
               chr28:4138486-4138819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               48, 294
               

               Conread position:
               199-368
               

               Cow position:
               chr28:27429202-27429029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               52, 154
               

               Conread position:
               199-514
               

               Cow position:
               chr28:16085490-16085175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               225
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               137, 18
               

               Conread position:
               201-457
               

               Cow position:
               chr28:11559459-11559725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               202-508
               

               Cow position:
               chr28:34134031-34133720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 19
               

               Conread position:
               205-505
               

               Cow position:
               chr28:26103868-26103571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               42, 70
               

               Conread position:
               206-515
               

               Cow position:
               chr28:3408053-3408363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               41, 99
               

               Conread position:
               209-513
               

               Cow position:
               chr28:11686852-11687175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               237
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               37, 109
               

               Conread position:
               213-361
               

               Cow position:
               chr28:10212266-10212422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               216-328
               

               Cow position:
               chr28:24726281-24726396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               97
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               217-509
               

               Cow position:
               chr28:4355698-4355405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               34, 6
               

               Conread position:
               218-514
               

               Cow position:
               chr28:4938958-4938686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               221
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               33, 85
               

               Conread position:
               220-515
               

               Cow position:
               chr28:25596778-25596483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 220
               

               Conread position:
               223-504
               

               Cow position:
               chr28:25728346-25728060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               35, 124
               

               Conread position:
               225-429
               

               Cow position:
               chr28:7776355-7776564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               150
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               19, 40
               

               Conread position:
               225-515
               

               Cow position:
               chr28:18759911-18760196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               204
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               14, 26
               

               Conread position:
               227-390
               

               Cow position:
               chr28:10775563-10775737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               23, 85
               

               Conread position:
               229-515
               

               Cow position:
               chr28:25249495-25249205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               211
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               22, 163
               

               Conread position:
               230-335
               

               Cow position:
               chr28:3264182-3264077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               106
               

               Alignm identity:
               92
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               230-515
               

               Cow position:
               chr28:21355371-21355077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               213
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               21, 149
               

               Conread position:
               234-506
               

               Cow position:
               chr28:27161193-27161470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               204
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               88, 15
               

               Conread position:
               236-500
               

               Cow position:
               chr28:12892304-12892567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               111, 92
               

               Conread position:
               236-515
               

               Cow position:
               chr28:10172285-10172559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 15
               

               Conread position:
               236-515
               

               Cow position:
               chr28:26685243-26684967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               192
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               94, 13
               

               Conread position:
               237-363
               

               Cow position:
               chr28:4051329-4051201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               103
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               89, 20
               

               Conread position:
               237-387
               

               Cow position:
               chr28:8149501-8149653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               116
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               86, 12
               

               Conread position:
               237-453
               

               Cow position:
               chr28:7388639-7388855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               12, 105
               

               Conread position:
               237-502
               

               Cow position:
               chr28:29199861-29199590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               91, 12
               

               Conread position:
               237-503
               

               Cow position:
               chr28:19025872-19026149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               237-505
               

               Cow position:
               chr28:16110070-16109802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               24, 47
               

               Conread position:
               237-505
               

               Cow position:
               chr28:26220387-26220116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 12
               

               Conread position:
               237-507
               

               Cow position:
               chr28:29434295-29434564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               14, 171
               

               Conread position:
               237-511
               

               Cow position:
               chr28:5771497-5771221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               186
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               24, 36
               

               Conread position:
               237-512
               

               Cow position:
               chr28:22321551-22321279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               14, 9
               

               Conread position:
               237-513
               

               Cow position:
               chr28:8021971-8022256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 22
               

               Conread position:
               237-515
               

               Cow position:
               chr28:2752361-2752646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               209
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               14, 113
               

               Conread position:
               237-515
               

               Cow position:
               chr28:6971215-6971493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 167
               

               Conread position:
               237-515
               

               Cow position:
               chr28:14649476-14649199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 72
               

               Conread position:
               237-515
               

               Cow position:
               chr28:31109868-31110155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               13, 160
               

               Conread position:
               237-515
               

               Cow position:
               chr28:33052167-33051879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 12
               

               Conread position:
               238-447
               

               Cow position:
               chr28:12070361-12070154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               85, 8
               

               Conread position:
               238-498
               

               Cow position:
               chr28:1538290-1538036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               109, 23
               

               Conread position:
               238-514
               

               Cow position:
               chr28:19222020-19222290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               91, 135
               

               Conread position:
               239-376
               

               Cow position:
               chr28:3397073-3397207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               89, 68
               

               Conread position:
               239-461
               

               Cow position:
               chr28:30865548-30865325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               152
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               11, 81
               

               Conread position:
               239-500
               

               Cow position:
               chr28:25399998-25399746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               193
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               239-503
               

               Cow position:
               chr28:14512664-14512385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               5, 252
               

               Conread position:
               239-515
               

               Cow position:
               chr28:1632528-1632804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               190
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               130, 17
               

               Conread position:
               240-396
               

               Cow position:
               chr28:22147886-22148044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               62, 22
               

               Conread position:
               240-411
               

               Cow position:
               chr28:7498019-7498192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               87, 9
               

               Conread position:
               240-462
               

               Cow position:
               chr28:13232985-13233205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               71, 93
               

               Conread position:
               240-500
               

               Cow position:
               chr28:28164215-28163951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               198
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               8, 29
               

               Conread position:
               240-515
               

               Cow position:
               chr28:11752009-11752290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               242-340
               

               Cow position:
               chr28:7532460-7532558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               99
               

               Alignm identity:
               83
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               242-406
               

               Cow position:
               chr28:32179821-32179654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               10, 87
               

               Conread position:
               242-432
               

               Cow position:
               chr28:4765803-4765611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               71, 157
               

               Conread position:
               242-490
               

               Cow position:
               chr28:32174757-32174507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               9, 130
               

               Conread position:
               243-416
               

               Cow position:
               chr28:4438838-4438662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               135
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               39, 159
               

               Conread position:
               243-506
               

               Cow position:
               chr28:24018110-24017857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               214, 84
               

               Conread position:
               243-515
               

               Cow position:
               chr28:25806700-25806422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               38, 14
               

               Conread position:
               244-412
               

               Cow position:
               chr28:4873221-4873392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               72, 5
               

               Conread position:
               244-515
               

               Cow position:
               chr28:34561467-34561201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 13
               

               Conread position:
               247-362
               

               Cow position:
               chr28:5460696-5460810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               97
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               46, 70
               

               Conread position:
               248-514
               

               Cow position:
               chr28:7865450-7865176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               249-389
               

               Cow position:
               chr28:4361331-4361471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               77, 20
               

               Conread position:
               249-434
               

               Cow position:
               chr28:4179672-4179487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               9, 80
               

               Conread position:
               249-477
               

               Cow position:
               chr28:7372002-7372232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               167
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               74, 150
               

               Conread position:
               249-478
               

               Cow position:
               chr28:17601755-17601987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               80, 126
               

               Conread position:
               249-515
               

               Cow position:
               chr28:26922248-26922514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               74, 100
               

               Conread position:
               251-387
               

               Cow position:
               chr28:3147596-3147460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               126, 7
               

               Conread position:
               251-472
               

               Cow position:
               chr28:16245947-16246169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               72, 129
               

               Conread position:
               251-515
               

               Cow position:
               chr28:12619692-12619417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               202
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               74, 41
               

               Conread position:
               252-512
               

               Cow position:
               chr28:21598133-21598399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               19, 150
               

               Conread position:
               253-515
               

               Cow position:
               chr28:13176573-13176824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               166, 77
               

               Conread position:
               256-504
               

               Cow position:
               chr28:32365956-32365708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               66, 11
               

               Conread position:
               256-513
               

               Cow position:
               chr28:7228277-7228530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               118, 18
               

               Conread position:
               256-515
               

               Cow position:
               chr28:15043749-15044010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 140
               

               Conread position:
               257-515
               

               Cow position:
               chr28:3169077-3169341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               199
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               68, 100
               

               Conread position:
               257-515
               

               Cow position:
               chr28:16841656-16841895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               188
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               257-516
               

               Cow position:
               chr28:18591382-18591123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 165
               

               Conread position:
               258-515
               

               Cow position:
               chr28:8408847-8408585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               185
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               22, 138
               

               Conread position:
               258-515
               

               Cow position:
               chr28:32735201-32734943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               58, 111
               

               Conread position:
               259-513
               

               Cow position:
               chr28:4841280-4841539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               64, 144
               

               Conread position:
               259-515
               

               Cow position:
               chr28:5128618-5128875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 93
               

               Conread position:
               260-375
               

               Cow position:
               chr28:25675396-25675514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               98
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               260-509
               

               Cow position:
               chr28:21380988-21380735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               181
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               70, 26
               

               Conread position:
               260-515
               

               Cow position:
               chr28:2862977-2862716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               263-509
               

               Cow position:
               chr28:2873025-2872774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               264-515
               

               Cow position:
               chr28:11786612-11786862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               65, 132
               

               Conread position:
               266-515
               

               Cow position:
               chr28:23676241-23675991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               57, 130
               

               Conread position:
               269-512
               

               Cow position:
               chr28:18186656-18186408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 106
               

               Conread position:
               276-506
               

               Cow position:
               chr28:4536552-4536316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               65, 144
               

               Conread position:
               277-509
               

               Cow position:
               chr28:25283286-25283064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               142, 52
               

               Conread position:
               284-498
               

               Cow position:
               chr28:21672878-21672670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               134, 115
               

               Conread position:
               300-515
               

               Cow position:
               chr28:7548989-7549208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               170
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               30, 101
               

               Conread position:
               303-512
               

               Cow position:
               chr28:4588163-4587953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               154
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               116, 95
               

               Conread position:
               307-515
               

               Cow position:
               chr28:7751239-7751446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               23, 132
               

               Conread position:
               308-515
               

               Cow position:
               chr28:2737745-2737957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               158
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               22, 43
               

               Conread position:
               323-515
               

               Cow position:
               chr28:5904775-5904586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               96, 49
               

               Conread position:
               324-515
               

               Cow position:
               chr28:3256840-3256648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               95, 69
               

               Conread position:
               325-504
               

               Cow position:
               chr28:22339035-22338856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               126
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               93, 149
               

               Conread position:
               336-515
               

               Cow position:
               chr28:7607946-7608129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               141
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               350-515
               

               Cow position:
               chr28:15063323-15063484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               69, 48
               

               Conread position:
               351-514
               

               Cow position:
               chr28:32747935-32747779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               70, 36
               

               Conread position:
               351-515
               

               Cow position:
               chr28:3751329-3751168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               121
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               46, 24
               

               Conread position:
               351-515
               

               Cow position:
               chr28:7980402-7980564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               120
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               46, 69
               

               Conread position:
               351-515
               

               Cow position:
               chr28:10212702-10212858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               351-515
               

               Cow position:
               chr28:24646554-24646395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               122
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               55, 88
               

               Conread position:
               355-514
               

               Cow position:
               chr28:4880253-4880412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               119
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               20, 49
               

               Conread position:
               362-515
               

               Cow position:
               chr28:7590177-7590331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               118
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               54, 32
               

               Conread position:
               365-515
               

               Cow position:
               chr28:2905576-2905431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               54, 43
               

               Conread position:
               375-515
               

               Cow position:
               chr28:23776039-23775900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               44, 34
               

               Conread position:
               398-515
               

               Cow position:
               chr28:8348681-8348798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               96
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               36, 31
               
Show alignments to all cow chromosomes.
Conread position:	108-331
Cow position:	chr28:10298112-10297889 (view UCSC Genome Browser custom track)
Alignm length:	230
Alignm identity:	159
Alignm E-value:	1e-24
Alignm gaps (pig, cow):	48, 101
Conread position:	111-332
Cow position:	chr28:117489-117726 (view UCSC Genome Browser custom track)
Alignm length:	238
Alignm identity:	166
Alignm E-value:	3e-24
Alignm gaps (pig, cow):	5, 0
Conread position:	115-476
Cow position:	chr28:34247785-34248133 (view UCSC Genome Browser custom track)
Alignm length:	365
Alignm identity:	237
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	197, 56
Conread position:	124-328
Cow position:	chr28:4936988-4937201 (view UCSC Genome Browser custom track)
Alignm length:	214
Alignm identity:	146
Alignm E-value:	9e-23
Alignm gaps (pig, cow):	121, 0
Conread position:	132-500
Cow position:	chr28:6091597-6091229 (view UCSC Genome Browser custom track)
Alignm length:	376
Alignm identity:	255
Alignm E-value:	2.94273e-44
Alignm gaps (pig, cow):	191, 39
Conread position:	134-513
Cow position:	chr28:12964819-12964423 (view UCSC Genome Browser custom track)
Alignm length:	404
Alignm identity:	290
Alignm E-value:	0
Alignm gaps (pig, cow):	104, 22
Conread position:	134-515
Cow position:	chr28:30937441-30937812 (view UCSC Genome Browser custom track)
Alignm length:	385
Alignm identity:	280
Alignm E-value:	0
Alignm gaps (pig, cow):	42, 65
Conread position:	137-325
Cow position:	chr28:16856868-16857063 (view UCSC Genome Browser custom track)
Alignm length:	197
Alignm identity:	145
Alignm E-value:	5e-29
Alignm gaps (pig, cow):	11, 19
Conread position:	140-509
Cow position:	chr28:10863565-10863925 (view UCSC Genome Browser custom track)
Alignm length:	378
Alignm identity:	276
Alignm E-value:	0
Alignm gaps (pig, cow):	110, 63
Conread position:	141-317
Cow position:	chr28:21263388-21263209 (view UCSC Genome Browser custom track)
Alignm length:	180
Alignm identity:	144
Alignm E-value:	6e-40
Alignm gaps (pig, cow):	108, 0
Conread position:	142-308
Cow position:	chr28:11814845-11815015 (view UCSC Genome Browser custom track)
Alignm length:	172
Alignm identity:	129
Alignm E-value:	1e-26
Alignm gaps (pig, cow):	6, 32
Conread position:	143-301
Cow position:	chr28:8164983-8165148 (view UCSC Genome Browser custom track)
Alignm length:	168
Alignm identity:	123
Alignm E-value:	8e-22
Alignm gaps (pig, cow):	107, 31
Conread position:	145-307
Cow position:	chr28:7808859-7808701 (view UCSC Genome Browser custom track)
Alignm length:	163
Alignm identity:	129
Alignm E-value:	3e-33
Alignm gaps (pig, cow):	15, 0
Conread position:	146-335
Cow position:	chr28:11827921-11827719 (view UCSC Genome Browser custom track)
Alignm length:	203
Alignm identity:	146
Alignm E-value:	1e-24
Alignm gaps (pig, cow):	18, 0
Conread position:	146-407
Cow position:	chr28:17740054-17739785 (view UCSC Genome Browser custom track)
Alignm length:	273
Alignm identity:	211
Alignm E-value:	0
Alignm gaps (pig, cow):	13, 23
Conread position:	146-447
Cow position:	chr28:5138770-5139078 (view UCSC Genome Browser custom track)
Alignm length:	315
Alignm identity:	249
Alignm E-value:	0
Alignm gaps (pig, cow):	30, 14
Conread position:	146-513
Cow position:	chr28:20313494-20313125 (view UCSC Genome Browser custom track)
Alignm length:	377
Alignm identity:	251
Alignm E-value:	4e-37
Alignm gaps (pig, cow):	176, 36
Conread position:	148-391
Cow position:	chr28:7131865-7132111 (view UCSC Genome Browser custom track)
Alignm length:	249
Alignm identity:	198
Alignm E-value:	0
Alignm gaps (pig, cow):	104, 24
Conread position:	149-363
Cow position:	chr28:19994720-19994943 (view UCSC Genome Browser custom track)
Alignm length:	225
Alignm identity:	160
Alignm E-value:	5e-29
Alignm gaps (pig, cow):	96, 188
Conread position:	150-515
Cow position:	chr28:2960606-2960981 (view UCSC Genome Browser custom track)
Alignm length:	377
Alignm identity:	263
Alignm E-value:	0
Alignm gaps (pig, cow):	11, 37