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Cow genome map

           
Conread name:
           
Ova1-OVRM10096D07
        

               
Conread position:
               
106-331
               

               
Cow position:
               
chr3:84154646-84154424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
16, 68
               

               
Conread position:
               
110-515
               

               
Cow position:
               
chr3:51233865-51234275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 60
               

               
Conread position:
               
126-515
               

               
Cow position:
               
chr3:23105145-23105544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 12
               

               
Conread position:
               
128-391
               

               
Cow position:
               
chr3:68004490-68004756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
16, 38
               

               
Conread position:
               
129-516
               

               
Cow position:
               
chr3:53875545-53875938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
8, 20
               

               
Conread position:
               
135-376
               

               
Cow position:
               
chr3:44960159-44959903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
41, 226
               

               
Conread position:
               
136-501
               

               
Cow position:
               
chr3:59630292-59630666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
26, 56
               

               
Conread position:
               
138-395
               

               
Cow position:
               
chr3:3698849-3698601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
182, 18
               

               
Conread position:
               
143-515
               

               
Cow position:
               
chr3:71247216-71246849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
93, 60
               

               
Conread position:
               
145-321
               

               
Cow position:
               
chr3:59635501-59635331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
145-430
               

               
Cow position:
               
chr3:48459132-48459424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
93, 15
               

               
Conread position:
               
145-433
               

               
Cow position:
               
chr3:4549217-4548920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 27
               

               
Conread position:
               
146-504
               

               
Cow position:
               
chr3:14465518-14465874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
183, 25
               

               
Conread position:
               
147-334
               

               
Cow position:
               
chr3:34164088-34164281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
27, 111
               

               
Conread position:
               
147-505
               

               
Cow position:
               
chr3:30180284-30179912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
148-477
               

               
Cow position:
               
chr3:34871767-34871428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
27, 156
               

               
Conread position:
               
148-515
               

               
Cow position:
               
chr3:15159228-15158863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 37
               

               
Conread position:
               
148-515
               

               
Cow position:
               
chr3:67519978-67520354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
99, 118
               

               
Conread position:
               
149-328
               

               
Cow position:
               
chr3:21694424-21694236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
99, 77
               

               
Conread position:
               
149-515
               

               
Cow position:
               
chr3:9641752-9641387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 98
               

               
Conread position:
               
150-320
               

               
Cow position:
               
chr3:73837521-73837699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
150-328
               

               
Cow position:
               
chr3:9718053-9718240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
150-328
               

               
Cow position:
               
chr3:35075066-35074890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
150-331
               

               
Cow position:
               
chr3:4071573-4071762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
100, 150
               

               
Conread position:
               
151-375
               

               
Cow position:
               
chr3:42967197-42967416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
25, 17
               

               
Conread position:
               
151-391
               

               
Cow position:
               
chr3:46792579-46792331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
151-397
               

               
Cow position:
               
chr3:47316186-47316439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
100, 12
               

               
Conread position:
               
151-414
               

               
Cow position:
               
chr3:10591320-10591593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 19
               

               
Conread position:
               
151-505
               

               
Cow position:
               
chr3:55970710-55970337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
96, 136
               

               
Conread position:
               
151-515
               

               
Cow position:
               
chr3:2675222-2674851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 9
               

               
Conread position:
               
151-515
               

               
Cow position:
               
chr3:83491275-83490905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
99, 151
               

               
Conread position:
               
151-527
               

               
Cow position:
               
chr3:19793089-19792701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
100, 19
               

               
Conread position:
               
152-328
               

               
Cow position:
               
chr3:81616256-81616441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
152-365
               

               
Cow position:
               
chr3:67407173-67407394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
152-514
               

               
Cow position:
               
chr3:59649447-59649077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
80, 73
               

               
Conread position:
               
153-313
               

               
Cow position:
               
chr3:68566004-68565848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
94, 9
               

               
Conread position:
               
153-328
               

               
Cow position:
               
chr3:3453774-3453591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
95, 19
               

               
Conread position:
               
153-335
               

               
Cow position:
               
chr3:12090871-12090678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
23, 160
               

               
Conread position:
               
153-396
               

               
Cow position:
               
chr3:67626165-67626403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
173, 19
               

               
Conread position:
               
153-512
               

               
Cow position:
               
chr3:13301654-13302024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
23, 79
               

               
Conread position:
               
154-273
               

               
Cow position:
               
chr3:27670664-27670547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
154-303
               

               
Cow position:
               
chr3:29221765-29221919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
17, 61
               

               
Conread position:
               
154-328
               

               
Cow position:
               
chr3:76168439-76168620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
84, 6
               

               
Conread position:
               
154-328
               

               
Cow position:
               
chr3:79893305-79893486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
91, 6
               

               
Conread position:
               
154-335
               

               
Cow position:
               
chr3:70333035-70333219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
22, 106
               

               
Conread position:
               
154-346
               

               
Cow position:
               
chr3:26977728-26977529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
89, 18
               

               
Conread position:
               
154-391
               

               
Cow position:
               
chr3:24596232-24596478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 6
               

               
Conread position:
               
155-303
               

               
Cow position:
               
chr3:39967305-39967452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
91, 47
               

               
Conread position:
               
155-331
               

               
Cow position:
               
chr3:15862186-15862013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
75, 79
               

               
Conread position:
               
155-385
               

               
Cow position:
               
chr3:16107185-16107413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
96, 17
               

               
Conread position:
               
155-445
               

               
Cow position:
               
chr3:57704522-57704214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 17
               

               
Conread position:
               
155-471
               

               
Cow position:
               
chr3:18059898-18059567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
21, 253
               

               
Conread position:
               
155-514
               

               
Cow position:
               
chr3:36569847-36570223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
103, 54
               

               
Conread position:
               
155-515
               

               
Cow position:
               
chr3:26066178-26065827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 97
               

               
Conread position:
               
155-515
               

               
Cow position:
               
chr3:83474945-83474569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 283
               

               
Conread position:
               
155-516
               

               
Cow position:
               
chr3:6182041-6182379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 177
               

               
Conread position:
               
156-326
               

               
Cow position:
               
chr3:14211794-14211969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
156-328
               

               
Cow position:
               
chr3:12637694-12637521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
156-328
               

               
Cow position:
               
chr3:77654110-77653939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
156-336
               

               
Cow position:
               
chr3:82424891-82425075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
90, 26
               

               
Conread position:
               
156-359
               

               
Cow position:
               
chr3:22094422-22094617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
22, 87
               

               
Conread position:
               
156-359
               

               
Cow position:
               
chr3:31115088-31115292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
172, 100
               

               
Conread position:
               
156-505
               

               
Cow position:
               
chr3:9662979-9663340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 219
               

               
Conread position:
               
156-509
               

               
Cow position:
               
chr3:53739008-53739358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 16
               

               
Conread position:
               
156-513
               

               
Cow position:
               
chr3:75080942-75080594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 69
               

               
Conread position:
               
156-514
               

               
Cow position:
               
chr3:1830383-1830746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 27
               

               
Conread position:
               
156-514
               

               
Cow position:
               
chr3:2518351-2518710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
55, 236
               

               
Conread position:
               
156-514
               

               
Cow position:
               
chr3:66884841-66885211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
95, 12
               

               
Conread position:
               
156-515
               

               
Cow position:
               
chr3:14801937-14801570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 49
               

               
Conread position:
               
156-515
               

               
Cow position:
               
chr3:45211494-45211119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
19, 7
               

               
Conread position:
               
157-441
               

               
Cow position:
               
chr3:47753426-47753121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
157-477
               

               
Cow position:
               
chr3:1517321-1517654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
19, 247
               

               
Conread position:
               
157-491
               

               
Cow position:
               
chr3:81039558-81039900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 11
               

               
Conread position:
               
157-514
               

               
Cow position:
               
chr3:18687092-18686730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
10, 236
               

               
Conread position:
               
157-514
               

               
Cow position:
               
chr3:36375346-36375721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 128
               

               
Conread position:
               
157-514
               

               
Cow position:
               
chr3:53428728-53429073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 198
               

               
Conread position:
               
158-514
               

               
Cow position:
               
chr3:8061310-8060950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 50
               

               
Conread position:
               
159-463
               

               
Cow position:
               
chr3:35621481-35621176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
28, 21
               

               
Conread position:
               
160-307
               

               
Cow position:
               
chr3:24370577-24370434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
160-314
               

               
Cow position:
               
chr3:69849112-69849267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
160-367
               

               
Cow position:
               
chr3:8522967-8523180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
16, 130
               

               
Conread position:
               
160-434
               

               
Cow position:
               
chr3:3316621-3316908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
16, 170
               

               
Conread position:
               
160-515
               

               
Cow position:
               
chr3:82019656-82020018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 284
               

               
Conread position:
               
161-368
               

               
Cow position:
               
chr3:52845741-52845520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
163-335
               

               
Cow position:
               
chr3:41510761-41510578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
163-385
               

               
Cow position:
               
chr3:44960835-44961052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
167, 64
               

               
Conread position:
               
163-431
               

               
Cow position:
               
chr3:478641-478893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
239, 64
               

               
Conread position:
               
163-448
               

               
Cow position:
               
chr3:60389936-60389656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 82
               

               
Conread position:
               
163-497
               

               
Cow position:
               
chr3:74601293-74600951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 22
               

               
Conread position:
               
163-515
               

               
Cow position:
               
chr3:5365848-5365493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
166, 76
               

               
Conread position:
               
165-499
               

               
Cow position:
               
chr3:16333986-16333638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
16, 236
               

               
Conread position:
               
165-503
               

               
Cow position:
               
chr3:29813407-29813078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 164
               

               
Conread position:
               
165-512
               

               
Cow position:
               
chr3:83846083-83845729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
27, 93
               

               
Conread position:
               
165-515
               

               
Cow position:
               
chr3:75480179-75479827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 156
               

               
Conread position:
               
166-477
               

               
Cow position:
               
chr3:17331899-17331586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 60
               

               
Conread position:
               
166-515
               

               
Cow position:
               
chr3:64280759-64281110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 10
               

               
Conread position:
               
168-317
               

               
Cow position:
               
chr3:73924862-73925015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
169-279
               

               
Cow position:
               
chr3:5706436-5706544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
169-320
               

               
Cow position:
               
chr3:74515159-74515318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
171-281
               

               
Cow position:
               
chr3:17401549-17401437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
171-313
               

               
Cow position:
               
chr3:30682854-30682999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
171-328
               

               
Cow position:
               
chr3:23203054-23203219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
68, 132
               

               
Conread position:
               
171-338
               

               
Cow position:
               
chr3:17531561-17531739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
171-345
               

               
Cow position:
               
chr3:23804677-23804500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
75, 31
               

               
Conread position:
               
171-365
               

               
Cow position:
               
chr3:15160692-15160492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
171-490
               

               
Cow position:
               
chr3:46541676-46541981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
152, 45
               

               
Conread position:
               
171-500
               

               
Cow position:
               
chr3:22675932-22676254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 171
               

               
Conread position:
               
171-504
               

               
Cow position:
               
chr3:35153781-35153454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
154, 71
               

               
Conread position:
               
171-505
               

               
Cow position:
               
chr3:48241781-48241448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
78, 14
               

               
Conread position:
               
171-509
               

               
Cow position:
               
chr3:20674704-20675045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
61, 31
               

               
Conread position:
               
171-513
               

               
Cow position:
               
chr3:12705372-12705722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 108
               

               
Conread position:
               
171-513
               

               
Cow position:
               
chr3:25477967-25477640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
171-515
               

               
Cow position:
               
chr3:11063538-11063204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 36
               

               
Conread position:
               
171-515
               

               
Cow position:
               
chr3:20802465-20802808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
157, 79
               

               
Conread position:
               
171-515
               

               
Cow position:
               
chr3:49328109-49327763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 51
               

               
Conread position:
               
171-516
               

               
Cow position:
               
chr3:4319894-4319535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
45, 234
               

               
Conread position:
               
171-516
               

               
Cow position:
               
chr3:57577871-57577519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
77, 45
               

               
Conread position:
               
172-280
               

               
Cow position:
               
chr3:3887465-3887580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
172-284
               

               
Cow position:
               
chr3:49369783-49369667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
172-287
               

               
Cow position:
               
chr3:15952467-15952355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
172-288
               

               
Cow position:
               
chr3:61190359-61190479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
172-289
               

               
Cow position:
               
chr3:77650756-77650634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
172-293
               

               
Cow position:
               
chr3:41826162-41826286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
172-299
               

               
Cow position:
               
chr3:39902337-39902473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
172-305
               

               
Cow position:
               
chr3:53249659-53249523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
172-306
               

               
Cow position:
               
chr3:32436812-32436669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
36, 101
               

               
Conread position:
               
172-308
               

               
Cow position:
               
chr3:45168736-45168600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
122, 84
               

               
Conread position:
               
172-309
               

               
Cow position:
               
chr3:15689181-15689311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
172-310
               

               
Cow position:
               
chr3:26760031-26759899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
172-314
               

               
Cow position:
               
chr3:75908085-75907937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
172-314
               

               
Cow position:
               
chr3:83325381-83325238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 56
               

               
Conread position:
               
172-318
               

               
Cow position:
               
chr3:44218942-44218787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
172-319
               

               
Cow position:
               
chr3:22078252-22078096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
172-319
               

               
Cow position:
               
chr3:29807907-29807762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
172-319
               

               
Cow position:
               
chr3:60371158-60371003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
69, 38
               

               
Conread position:
               
172-320
               

               
Cow position:
               
chr3:27286689-27286538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
172-320
               

               
Cow position:
               
chr3:44725042-44724881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
172-320
               

               
Cow position:
               
chr3:53604570-53604726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
172-324
               

               
Cow position:
               
chr3:11027451-11027290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
172-324
               

               
Cow position:
               
chr3:16362341-16362489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
89, 38
               

               
Conread position:
               
172-324
               

               
Cow position:
               
chr3:24220406-24220562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
172-324
               

               
Cow position:
               
chr3:26337842-26338004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
172-324
               

               
Cow position:
               
chr3:78258576-78258739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
67, 113
               

               
Conread position:
               
172-325
               

               
Cow position:
               
chr3:986189-986029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
74, 113
               

               
Conread position:
               
172-325
               

               
Cow position:
               
chr3:2637119-2636964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
78, 42
               

               
Conread position:
               
172-325
               

               
Cow position:
               
chr3:14517907-14518063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
77, 60
               

               
Conread position:
               
172-325
               

               
Cow position:
               
chr3:49787730-49787574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
77, 154
               

               
Conread position:
               
172-325
               

               
Cow position:
               
chr3:57790782-57790629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
77, 10
               

               
Conread position:
               
172-325
               

               
Cow position:
               
chr3:72027813-72027652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 152
               

               
Conread position:
               
172-326
               

               
Cow position:
               
chr3:5737918-5737765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
78, 13
               

               
Conread position:
               
172-326
               

               
Cow position:
               
chr3:18471477-18471315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
172-326
               

               
Cow position:
               
chr3:28896847-28897008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
72, 122
               

               
Conread position:
               
172-326
               

               
Cow position:
               
chr3:55105972-55106135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
172-326
               

               
Cow position:
               
chr3:64909921-64910082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
172-326
               

               
Cow position:
               
chr3:83672029-83671869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 108
               

               
Conread position:
               
172-327
               

               
Cow position:
               
chr3:23640513-23640356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr3:562615-562782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr3:2016606-2016447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr3:19044594-19044754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
120, 91
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr3:23037334-23037497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
67, 49
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr3:23753658-23753503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr3:24774816-24774665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
102, 31
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr3:26393125-26393288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr3:28902588-28902747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
78, 96
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr3:37641500-37641338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr3:43895889-43896048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr3:49789423-49789571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr3:50350804-50350957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
139, 74
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr3:51150304-51150140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
73, 22
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr3:57641977-57641812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
59, 149
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr3:59681733-59681892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr3:59947842-59947677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
73, 109
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr3:60186327-60186157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 154
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr3:68303492-68303326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr3:70402812-70402656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
78, 137
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr3:77098650-77098811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr3:79207541-79207691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 66
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr3:80958335-80958499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
78, 152
               

               
Conread position:
               
172-329
               

               
Cow position:
               
chr3:11229196-11229354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
5, 27
               

               
Conread position:
               
172-329
               

               
Cow position:
               
chr3:61023847-61024012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
76, 9
               

               
Conread position:
               
172-330
               

               
Cow position:
               
chr3:635352-635188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
73, 38
               

               
Conread position:
               
172-330
               

               
Cow position:
               
chr3:43388951-43389117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
73, 157
               

               
Conread position:
               
172-330
               

               
Cow position:
               
chr3:58929358-58929524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
76, 111
               

               
Conread position:
               
172-331
               

               
Cow position:
               
chr3:16867997-16867832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
67, 110
               

               
Conread position:
               
172-331
               

               
Cow position:
               
chr3:18764279-18764109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
172-331
               

               
Cow position:
               
chr3:76056114-76056276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
172-332
               

               
Cow position:
               
chr3:8526205-8526359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
150, 41
               

               
Conread position:
               
172-332
               

               
Cow position:
               
chr3:44594797-44594629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
62, 10
               

               
Conread position:
               
172-335
               

               
Cow position:
               
chr3:75966608-75966779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
172-338
               

               
Cow position:
               
chr3:74050532-74050699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 158
               

               
Conread position:
               
172-340
               

               
Cow position:
               
chr3:44782512-44782340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
79, 161
               

               
Conread position:
               
172-345
               

               
Cow position:
               
chr3:84212365-84212540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
42, 123
               

               
Conread position:
               
172-346
               

               
Cow position:
               
chr3:19709279-19709101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
172-346
               

               
Cow position:
               
chr3:22868542-22868729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
172-347
               

               
Cow position:
               
chr3:23818661-23818481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
60, 94
               

               
Conread position:
               
172-349
               

               
Cow position:
               
chr3:19611179-19611362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
172-358
               

               
Cow position:
               
chr3:73701672-73701483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
79, 15
               

               
Conread position:
               
172-359
               

               
Cow position:
               
chr3:27246793-27246981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
156, 68
               

               
Conread position:
               
172-365
               

               
Cow position:
               
chr3:18479122-18479326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
72, 128
               

               
Conread position:
               
172-368
               

               
Cow position:
               
chr3:73421309-73421524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
172-369
               

               
Cow position:
               
chr3:78071618-78071824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
172-373
               

               
Cow position:
               
chr3:10733052-10732854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
154, 54
               

               
Conread position:
               
172-376
               

               
Cow position:
               
chr3:4120197-4120405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
172-376
               

               
Cow position:
               
chr3:15973744-15973527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
172-385
               

               
Cow position:
               
chr3:5040129-5040355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
172-385
               

               
Cow position:
               
chr3:75107946-75107726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
172-386
               

               
Cow position:
               
chr3:8349397-8349614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
79, 24
               

               
Conread position:
               
172-387
               

               
Cow position:
               
chr3:29827993-29828198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
126, 72
               

               
Conread position:
               
172-387
               

               
Cow position:
               
chr3:73335453-73335234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
79, 31
               

               
Conread position:
               
172-388
               

               
Cow position:
               
chr3:5305977-5305747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
75, 31
               

               
Conread position:
               
172-388
               

               
Cow position:
               
chr3:30357683-30357470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
69, 103
               

               
Conread position:
               
172-389
               

               
Cow position:
               
chr3:71703632-71703426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
172-391
               

               
Cow position:
               
chr3:69650724-69650943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
69, 31
               

               
Conread position:
               
172-391
               

               
Cow position:
               
chr3:82629484-82629262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
26, 31
               

               
Conread position:
               
172-392
               

               
Cow position:
               
chr3:3947210-3946983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
172-392
               

               
Cow position:
               
chr3:9121016-9120790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
71, 31
               

               
Conread position:
               
172-393
               

               
Cow position:
               
chr3:11281943-11281710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
67, 184
               

               
Conread position:
               
172-395
               

               
Cow position:
               
chr3:8540675-8540466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
74, 25
               

               
Conread position:
               
172-395
               

               
Cow position:
               
chr3:23131994-23132227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
172-395
               

               
Cow position:
               
chr3:71423395-71423609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
172-396
               

               
Cow position:
               
chr3:31804596-31804827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
164, 69
               

               
Conread position:
               
172-396
               

               
Cow position:
               
chr3:49344866-49344634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
78, 24
               

               
Conread position:
               
172-398
               

               
Cow position:
               
chr3:2638107-2637865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
172-398
               

               
Cow position:
               
chr3:75173426-75173641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
158, 30
               

               
Conread position:
               
172-400
               

               
Cow position:
               
chr3:56948922-56949152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
79, 30
               

               
Conread position:
               
172-400
               

               
Cow position:
               
chr3:84378302-84378542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
65, 109
               

               
Conread position:
               
172-402
               

               
Cow position:
               
chr3:1011666-1011420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
76, 111
               

               
Conread position:
               
172-406
               

               
Cow position:
               
chr3:33002559-33002324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
78, 139
               

               
Conread position:
               
172-412
               

               
Cow position:
               
chr3:79272402-79272646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
77, 227
               

               
Conread position:
               
172-417
               

               
Cow position:
               
chr3:76270062-76269819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 125
               

               
Conread position:
               
172-425
               

               
Cow position:
               
chr3:19682880-19682605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
172-427
               

               
Cow position:
               
chr3:39873534-39873786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
166, 62
               

               
Conread position:
               
172-428
               

               
Cow position:
               
chr3:69785446-69785716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 240
               

               
Conread position:
               
172-428
               

               
Cow position:
               
chr3:71474233-71474498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 92
               

               
Conread position:
               
172-430
               

               
Cow position:
               
chr3:27976348-27976617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
19, 10
               

               
Conread position:
               
172-434
               

               
Cow position:
               
chr3:64135871-64135619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 70
               

               
Conread position:
               
172-434
               

               
Cow position:
               
chr3:83787616-83787341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
79, 223
               

               
Conread position:
               
172-435
               

               
Cow position:
               
chr3:21866864-21867133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
55, 156
               

               
Conread position:
               
172-435
               

               
Cow position:
               
chr3:39996720-39996985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
77, 8
               

               
Conread position:
               
172-435
               

               
Cow position:
               
chr3:75777895-75778158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
153, 74
               

               
Conread position:
               
172-437
               

               
Cow position:
               
chr3:21112468-21112741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
93, 231
               

               
Conread position:
               
172-453
               

               
Cow position:
               
chr3:58527551-58527281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
78, 151
               

               
Conread position:
               
172-459
               

               
Cow position:
               
chr3:45700976-45700684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
78, 109
               

               
Conread position:
               
172-462
               

               
Cow position:
               
chr3:59605016-59604725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 221
               

               
Conread position:
               
172-464
               

               
Cow position:
               
chr3:51033546-51033243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
71, 35
               

               
Conread position:
               
172-465
               

               
Cow position:
               
chr3:14194016-14194307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
158, 17
               

               
Conread position:
               
172-466
               

               
Cow position:
               
chr3:3649065-3649347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
150, 59
               

               
Conread position:
               
172-466
               

               
Cow position:
               
chr3:35055802-35056108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
79, 154
               

               
Conread position:
               
172-466
               

               
Cow position:
               
chr3:51403070-51402779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 171
               

               
Conread position:
               
172-468
               

               
Cow position:
               
chr3:20996828-20997121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
82, 142
               

               
Conread position:
               
172-468
               

               
Cow position:
               
chr3:37041590-37041283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
67, 26
               

               
Conread position:
               
172-468
               

               
Cow position:
               
chr3:72342422-72342113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
66, 216
               

               
Conread position:
               
172-471
               

               
Cow position:
               
chr3:15443552-15443864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
74, 184
               

               
Conread position:
               
172-477
               

               
Cow position:
               
chr3:18426526-18426840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
74, 217
               

               
Conread position:
               
172-477
               

               
Cow position:
               
chr3:22221500-22221180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
66, 302
               

               
Conread position:
               
172-477
               

               
Cow position:
               
chr3:32610418-32610110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
151, 60
               

               
Conread position:
               
172-477
               

               
Cow position:
               
chr3:48900156-48900478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
79, 293
               

               
Conread position:
               
172-477
               

               
Cow position:
               
chr3:73237357-73237054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 75
               

               
Conread position:
               
172-477
               

               
Cow position:
               
chr3:75050449-75050759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
77, 22
               

               
Conread position:
               
172-477
               

               
Cow position:
               
chr3:76156160-76155847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 190
               

               
Conread position:
               
172-482
               

               
Cow position:
               
chr3:3883646-3883964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 119
               

               
Conread position:
               
172-489
               

               
Cow position:
               
chr3:55177577-55177905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 207
               

               
Conread position:
               
172-489
               

               
Cow position:
               
chr3:70333795-70334117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
106, 79
               

               
Conread position:
               
172-490
               

               
Cow position:
               
chr3:24852415-24852736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
48, 30
               

               
Conread position:
               
172-490
               

               
Cow position:
               
chr3:31225596-31225286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
78, 36
               

               
Conread position:
               
172-491
               

               
Cow position:
               
chr3:175117-174791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
70, 37
               

               
Conread position:
               
172-491
               

               
Cow position:
               
chr3:2648334-2648668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
73, 253
               

               
Conread position:
               
172-492
               

               
Cow position:
               
chr3:38035414-38035747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
93, 161
               

               
Conread position:
               
172-493
               

               
Cow position:
               
chr3:59474294-59473966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
64, 234
               

               
Conread position:
               
172-493
               

               
Cow position:
               
chr3:61894009-61894326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
157, 29
               

               
Conread position:
               
172-494
               

               
Cow position:
               
chr3:19586038-19585704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
172-494
               

               
Cow position:
               
chr3:24468210-24468536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
76, 33
               

               
Conread position:
               
172-494
               

               
Cow position:
               
chr3:61224575-61224899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 77
               

               
Conread position:
               
172-495
               

               
Cow position:
               
chr3:15057468-15057765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
247, 78
               

               
Conread position:
               
172-496
               

               
Cow position:
               
chr3:5374483-5374175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
244, 28
               

               
Conread position:
               
172-499
               

               
Cow position:
               
chr3:31077551-31077892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
65, 22
               

               
Conread position:
               
172-499
               

               
Cow position:
               
chr3:58764912-58765239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
158, 68
               

               
Conread position:
               
172-500
               

               
Cow position:
               
chr3:24872866-24872552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
246, 30
               

               
Conread position:
               
172-500
               

               
Cow position:
               
chr3:29359990-29360303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
172-500
               

               
Cow position:
               
chr3:76713138-76713489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
60, 180
               

               
Conread position:
               
172-500
               

               
Cow position:
               
chr3:81087462-81087785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
73, 166
               

               
Conread position:
               
172-502
               

               
Cow position:
               
chr3:48072712-48073039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 34
               

               
Conread position:
               
172-502
               

               
Cow position:
               
chr3:76267799-76268146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
5, 176
               

               
Conread position:
               
172-502
               

               
Cow position:
               
chr3:83441719-83442047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
58, 117
               

               
Conread position:
               
172-503
               

               
Cow position:
               
chr3:73915655-73915970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 50
               

               
Conread position:
               
172-504
               

               
Cow position:
               
chr3:189049-188693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
7, 14
               

               
Conread position:
               
172-504
               

               
Cow position:
               
chr3:66975073-66975412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
151, 51
               

               
Conread position:
               
172-505
               

               
Cow position:
               
chr3:2392795-2393133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 156
               

               
Conread position:
               
172-505
               

               
Cow position:
               
chr3:3985491-3985159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 151
               

               
Conread position:
               
172-505
               

               
Cow position:
               
chr3:13329619-13329946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
259, 79
               

               
Conread position:
               
172-505
               

               
Cow position:
               
chr3:17134505-17134170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
76, 211
               

               
Conread position:
               
172-505
               

               
Cow position:
               
chr3:28908042-28908370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
150, 63
               

               
Conread position:
               
172-505
               

               
Cow position:
               
chr3:30940979-30940647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
75, 25
               

               
Conread position:
               
172-505
               

               
Cow position:
               
chr3:32585327-32584985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 237
               

               
Conread position:
               
172-505
               

               
Cow position:
               
chr3:45667169-45667519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
64, 107
               

               
Conread position:
               
172-505
               

               
Cow position:
               
chr3:70676405-70676058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
86, 231
               

               
Conread position:
               
172-505
               

               
Cow position:
               
chr3:71478766-71478423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
77, 33
               

               
Conread position:
               
172-505
               

               
Cow position:
               
chr3:77365118-77365467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
79, 24
               

               
Conread position:
               
172-506
               

               
Cow position:
               
chr3:7763832-7763496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
65, 111
               

               
Conread position:
               
172-506
               

               
Cow position:
               
chr3:60264548-60264884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 19
               

               
Conread position:
               
172-507
               

               
Cow position:
               
chr3:52651906-52652245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
77, 167
               

               
Conread position:
               
172-509
               

               
Cow position:
               
chr3:15388394-15388043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
20, 31
               

               
Conread position:
               
172-509
               

               
Cow position:
               
chr3:23920252-23920602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
76, 233
               

               
Conread position:
               
172-510
               

               
Cow position:
               
chr3:59333933-59333598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
15, 134
               

               
Conread position:
               
172-512
               

               
Cow position:
               
chr3:54373683-54374036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
66, 111
               

               
Conread position:
               
172-512
               

               
Cow position:
               
chr3:55819923-55819572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
67, 119
               

               
Conread position:
               
172-512
               

               
Cow position:
               
chr3:56476848-56476505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 46
               

               
Conread position:
               
172-512
               

               
Cow position:
               
chr3:65413092-65413455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 248
               

               
Conread position:
               
172-513
               

               
Cow position:
               
chr3:16752080-16752429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 249
               

               
Conread position:
               
172-513
               

               
Cow position:
               
chr3:31309180-31309531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
73, 30
               

               
Conread position:
               
172-513
               

               
Cow position:
               
chr3:50768853-50768506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 230
               

               
Conread position:
               
172-513
               

               
Cow position:
               
chr3:79884306-79884663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
68, 173
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr3:14553046-14552701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 229
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr3:14725490-14725124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
65, 114
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr3:17456093-17456442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
81, 230
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr3:23734915-23735276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
74, 340
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr3:56583022-56582666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
65, 287
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr3:62046845-62046485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 226
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr3:67744466-67744800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
7, 31
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr3:69750561-69750878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
156, 55
               

               
Conread position:
               
172-514
               

               
Cow position:
               
chr3:70609799-70609449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 46
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:525500-525172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 31
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:2506302-2506655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
70, 137
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:4461316-4461667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 30
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:7330964-7331291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 31
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:8393513-8393172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 18
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:13353538-13353183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 230
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:14601538-14601891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
74, 31
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:15228667-15229003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
150, 41
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:17936673-17937013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 83
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:18393226-18393566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 87
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:18459363-18459698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
59, 30
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:18725489-18725813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
143, 31
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:20841705-20842034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
20, 71
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:22232494-22232830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 31
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:23408190-23408529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:26982223-26981886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
70, 31
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:27274701-27274353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 292
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:29887266-29887600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:33252718-33253059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
74, 258
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:38828925-38828588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
79, 49
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:39969689-39970046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 229
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:43233677-43233329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 105
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:44932686-44932334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 135
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:45882073-45881731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 222
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:48253053-48252706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 340
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:48363243-48362907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 159
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:50614797-50614459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
151, 66
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:53222186-53221836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 219
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:53790368-53790715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 44
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:53910280-53909935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:55189576-55189934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 240
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:65058873-65058524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 168
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:68156901-68156563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 33
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:68648351-68647986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
73, 111
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:68707848-68708182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 79
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:68880957-68881290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 79
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:71231572-71231220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
81, 227
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:73395289-73394942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 52
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:73467800-73467444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
63, 30
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:74234355-74234018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 24
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:74754489-74754150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 67
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:75570272-75570626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
67, 54
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:75853161-75853509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
78, 34
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:76172508-76172838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
301, 79
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:78077364-78077015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 233
               

               
Conread position:
               
172-515
               

               
Cow position:
               
chr3:80740727-80740390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
73, 30
               

               
Conread position:
               
172-517
               

               
Cow position:
               
chr3:36418313-36418646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 172
               

               
Conread position:
               
172-518
               

               
Cow position:
               
chr3:54781819-54782198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 117
               

               
Conread position:
               
172-518
               

               
Cow position:
               
chr3:70761949-70762304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 209
               

               
Conread position:
               
173-325
               

               
Cow position:
               
chr3:83934897-83934740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
173-328
               

               
Cow position:
               
chr3:2538410-2538252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
71, 102
               

               
Conread position:
               
173-329
               

               
Cow position:
               
chr3:34392052-34392209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
76, 114
               

               
Conread position:
               
173-339
               

               
Cow position:
               
chr3:56943757-56943928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
66, 30
               

               
Conread position:
               
173-442
               

               
Cow position:
               
chr3:49363280-49363011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 222
               

               
Conread position:
               
173-463
               

               
Cow position:
               
chr3:13380105-13380413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
173-469
               

               
Cow position:
               
chr3:59040743-59040435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
78, 103
               

               
Conread position:
               
173-476
               

               
Cow position:
               
chr3:10372429-10372140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
185, 25
               

               
Conread position:
               
173-477
               

               
Cow position:
               
chr3:78093220-78093524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 34
               

               
Conread position:
               
173-491
               

               
Cow position:
               
chr3:10958071-10958397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 30
               

               
Conread position:
               
173-495
               

               
Cow position:
               
chr3:77582279-77581950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
71, 156
               

               
Conread position:
               
173-496
               

               
Cow position:
               
chr3:79093888-79094207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 29
               

               
Conread position:
               
173-503
               

               
Cow position:
               
chr3:68616162-68616491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 167
               

               
Conread position:
               
173-505
               

               
Cow position:
               
chr3:48810465-48810805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
52, 235
               

               
Conread position:
               
173-505
               

               
Cow position:
               
chr3:77188613-77188269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
72, 109
               

               
Conread position:
               
173-514
               

               
Cow position:
               
chr3:54506879-54506532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 273
               

               
Conread position:
               
173-515
               

               
Cow position:
               
chr3:2630933-2630616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
246, 32
               

               
Conread position:
               
173-515
               

               
Cow position:
               
chr3:14599093-14598772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
126, 30
               

               
Conread position:
               
173-515
               

               
Cow position:
               
chr3:24353013-24352681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
145, 61
               

               
Conread position:
               
173-515
               

               
Cow position:
               
chr3:52608354-52608009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 254
               

               
Conread position:
               
173-515
               

               
Cow position:
               
chr3:53271007-53270650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
5, 234
               

               
Conread position:
               
173-515
               

               
Cow position:
               
chr3:59597346-59597007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 156
               

               
Conread position:
               
173-515
               

               
Cow position:
               
chr3:65237196-65236845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
77, 223
               

               
Conread position:
               
173-515
               

               
Cow position:
               
chr3:71238322-71237978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 9
               

               
Conread position:
               
173-515
               

               
Cow position:
               
chr3:76922500-76922841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 70
               

               
Conread position:
               
174-276
               

               
Cow position:
               
chr3:4321478-4321582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
174-307
               

               
Cow position:
               
chr3:53836538-53836674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
70, 107
               

               
Conread position:
               
174-310
               

               
Cow position:
               
chr3:58497832-58497687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
174-314
               

               
Cow position:
               
chr3:59885703-59885565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
90, 75
               

               
Conread position:
               
174-318
               

               
Cow position:
               
chr3:25735731-25735884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
174-325
               

               
Cow position:
               
chr3:31489878-31489734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
174-326
               

               
Cow position:
               
chr3:29234506-29234667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
74, 25
               

               
Conread position:
               
174-327
               

               
Cow position:
               
chr3:79398317-79398155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
174-328
               

               
Cow position:
               
chr3:11607989-11607834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
70, 88
               

               
Conread position:
               
174-328
               

               
Cow position:
               
chr3:18699936-18700099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
174-328
               

               
Cow position:
               
chr3:28883990-28884149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
72, 118
               

               
Conread position:
               
174-328
               

               
Cow position:
               
chr3:41366528-41366698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
174-328
               

               
Cow position:
               
chr3:46559544-46559703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
61, 102
               

               
Conread position:
               
174-328
               

               
Cow position:
               
chr3:55730294-55730457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
174-331
               

               
Cow position:
               
chr3:15859210-15859370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
75, 107
               

               
Conread position:
               
174-331
               

               
Cow position:
               
chr3:59317872-59317711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
78, 119
               

               
Conread position:
               
174-331
               

               
Cow position:
               
chr3:84137642-84137806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
174-335
               

               
Cow position:
               
chr3:7381660-7381827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
71, 53
               

               
Conread position:
               
174-335
               

               
Cow position:
               
chr3:47198954-47199125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
77, 26
               

               
Conread position:
               
174-368
               

               
Cow position:
               
chr3:20021440-20021238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
174-373
               

               
Cow position:
               
chr3:54905778-54905582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
174-379
               

               
Cow position:
               
chr3:35624371-35624587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
63, 108
               

               
Conread position:
               
174-386
               

               
Cow position:
               
chr3:49996545-49996772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
174-390
               

               
Cow position:
               
chr3:40212863-40213086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
74, 105
               

               
Conread position:
               
174-391
               

               
Cow position:
               
chr3:48468348-48468119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
74, 184
               

               
Conread position:
               
174-395
               

               
Cow position:
               
chr3:83889421-83889188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
174-405
               

               
Cow position:
               
chr3:84174476-84174234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
66, 200
               

               
Conread position:
               
174-407
               

               
Cow position:
               
chr3:74644732-74644487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
174-417
               

               
Cow position:
               
chr3:36160028-36160273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
154, 75
               

               
Conread position:
               
174-423
               

               
Cow position:
               
chr3:64196997-64196739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
174-434
               

               
Cow position:
               
chr3:3656687-3656418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
174-440
               

               
Cow position:
               
chr3:22165243-22165521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
174-458
               

               
Cow position:
               
chr3:15950745-15951033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 219
               

               
Conread position:
               
174-463
               

               
Cow position:
               
chr3:21014784-21015087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
75, 31
               

               
Conread position:
               
174-473
               

               
Cow position:
               
chr3:11253993-11254295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
66, 168
               

               
Conread position:
               
174-473
               

               
Cow position:
               
chr3:61116700-61116994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
142, 8
               

               
Conread position:
               
174-478
               

               
Cow position:
               
chr3:74584362-74584076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 62
               

               
Conread position:
               
174-495
               

               
Cow position:
               
chr3:15153860-15153534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 291
               

               
Conread position:
               
174-496
               

               
Cow position:
               
chr3:59035215-59034874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
74, 240
               

               
Conread position:
               
174-503
               

               
Cow position:
               
chr3:59610547-59610887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
174-505
               

               
Cow position:
               
chr3:2025375-2025016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
174-509
               

               
Cow position:
               
chr3:58960421-58960761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
75, 110
               

               
Conread position:
               
174-512
               

               
Cow position:
               
chr3:51578152-51578495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
67, 128
               

               
Conread position:
               
174-513
               

               
Cow position:
               
chr3:23168896-23169242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 28
               

               
Conread position:
               
174-514
               

               
Cow position:
               
chr3:3556720-3556372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
71, 184
               

               
Conread position:
               
174-514
               

               
Cow position:
               
chr3:49118858-49119204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
58, 109
               

               
Conread position:
               
174-514
               

               
Cow position:
               
chr3:80973523-80973180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
73, 150
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr3:17957633-17957284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
110, 76
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr3:30463004-30463344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
93, 36
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr3:39661282-39661631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
74, 183
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr3:53384108-53384462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
72, 60
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr3:55318726-55319081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 109
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr3:55712603-55712251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 54
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr3:67698451-67698101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
81, 117
               

               
Conread position:
               
174-515
               

               
Cow position:
               
chr3:68587191-68586845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 121
               

               
Conread position:
               
175-282
               

               
Cow position:
               
chr3:35168132-35168239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
175-307
               

               
Cow position:
               
chr3:27212489-27212354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
175-309
               

               
Cow position:
               
chr3:83921487-83921357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
12, 25
               

               
Conread position:
               
175-313
               

               
Cow position:
               
chr3:43527623-43527757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
175-319
               

               
Cow position:
               
chr3:22903587-22903732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
175-326
               

               
Cow position:
               
chr3:4518013-4518169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
175-326
               

               
Cow position:
               
chr3:41863793-41863639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
175-326
               

               
Cow position:
               
chr3:81400935-81401083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
175-328
               

               
Cow position:
               
chr3:28323381-28323229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
175-328
               

               
Cow position:
               
chr3:40957957-40958115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
175-330
               

               
Cow position:
               
chr3:56023194-56023042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
175-336
               

               
Cow position:
               
chr3:54557837-54557679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
175-367
               

               
Cow position:
               
chr3:22924209-22924405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
175-373
               

               
Cow position:
               
chr3:52457080-52456882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 109
               

               
Conread position:
               
175-386
               

               
Cow position:
               
chr3:39247861-39248073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
175-389
               

               
Cow position:
               
chr3:40100558-40100770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
145, 64
               

               
Conread position:
               
175-399
               

               
Cow position:
               
chr3:1037199-1036960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
175-404
               

               
Cow position:
               
chr3:81234559-81234324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
64, 221
               

               
Conread position:
               
175-406
               

               
Cow position:
               
chr3:59933551-59933302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
175-412
               

               
Cow position:
               
chr3:54981920-54982154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
98, 28
               

               
Conread position:
               
175-427
               

               
Cow position:
               
chr3:75608659-75608408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 71
               

               
Conread position:
               
175-427
               

               
Cow position:
               
chr3:81881287-81881531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
146, 65
               

               
Conread position:
               
175-434
               

               
Cow position:
               
chr3:31361594-31361322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
175-436
               

               
Cow position:
               
chr3:14547170-14546904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
72, 118
               

               
Conread position:
               
175-440
               

               
Cow position:
               
chr3:44625008-44625267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
151, 29
               

               
Conread position:
               
175-477
               

               
Cow position:
               
chr3:3889406-3889707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 66
               

               
Conread position:
               
175-477
               

               
Cow position:
               
chr3:20993966-20993671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
145, 51
               

               
Conread position:
               
175-484
               

               
Cow position:
               
chr3:17058376-17058687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
67, 203
               

               
Conread position:
               
175-489
               

               
Cow position:
               
chr3:54739729-54740037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
161, 30
               

               
Conread position:
               
175-500
               

               
Cow position:
               
chr3:60597708-60597379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
175-500
               

               
Cow position:
               
chr3:64010637-64010980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 122
               

               
Conread position:
               
175-505
               

               
Cow position:
               
chr3:54100542-54100891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
64, 235
               

               
Conread position:
               
175-509
               

               
Cow position:
               
chr3:24615671-24616009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
175-509
               

               
Cow position:
               
chr3:26904270-26903943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 62
               

               
Conread position:
               
175-512
               

               
Cow position:
               
chr3:49482543-49482886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
71, 30
               

               
Conread position:
               
175-513
               

               
Cow position:
               
chr3:57764384-57764051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
71, 33
               

               
Conread position:
               
175-513
               

               
Cow position:
               
chr3:70896210-70895874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 74
               

               
Conread position:
               
175-513
               

               
Cow position:
               
chr3:78092340-78092682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 116
               

               
Conread position:
               
175-514
               

               
Cow position:
               
chr3:74533505-74533175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 74
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr3:2199035-2198704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
141, 63
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr3:2396624-2396957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 84
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr3:6873100-6873422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
199, 28
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr3:15051781-15052130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr3:18067301-18066957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
54, 28
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr3:23471292-23471642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 271
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr3:26970982-26970649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
69, 22
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr3:53150504-53150151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 51
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr3:54435139-54434797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
80, 121
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr3:71496958-71497319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
71, 242
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr3:73764044-73764374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 66
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr3:74088006-74088348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 112
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr3:75158526-75158181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 27
               

               
Conread position:
               
175-515
               

               
Cow position:
               
chr3:83215440-83215075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
176-320
               

               
Cow position:
               
chr3:24922912-24922767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
176-325
               

               
Cow position:
               
chr3:63860440-63860596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
176-328
               

               
Cow position:
               
chr3:3401711-3401559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 28
               

               
Conread position:
               
176-331
               

               
Cow position:
               
chr3:63069191-63069357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
176-372
               

               
Cow position:
               
chr3:18831588-18831386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
145, 73
               

               
Conread position:
               
176-417
               

               
Cow position:
               
chr3:10668709-10668957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 233
               

               
Conread position:
               
176-463
               

               
Cow position:
               
chr3:58134514-58134814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
75, 179
               

               
Conread position:
               
176-504
               

               
Cow position:
               
chr3:54903737-54903405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
72, 166
               

               
Conread position:
               
176-505
               

               
Cow position:
               
chr3:210492-210148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 152
               

               
Conread position:
               
176-512
               

               
Cow position:
               
chr3:60933588-60933241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
69, 182
               

               
Conread position:
               
176-515
               

               
Cow position:
               
chr3:7337617-7337948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 27
               

               
Conread position:
               
176-515
               

               
Cow position:
               
chr3:57754305-57754658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
61, 105
               

               
Conread position:
               
176-515
               

               
Cow position:
               
chr3:83454987-83455326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 20
               

               
Conread position:
               
177-299
               

               
Cow position:
               
chr3:74939750-74939627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
177-307
               

               
Cow position:
               
chr3:77227971-77227841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
177-328
               

               
Cow position:
               
chr3:67942364-67942524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
177-328
               

               
Cow position:
               
chr3:70756470-70756630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
177-329
               

               
Cow position:
               
chr3:12899777-12899929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
58, 102
               

               
Conread position:
               
177-331
               

               
Cow position:
               
chr3:73513894-73514039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
177-437
               

               
Cow position:
               
chr3:49679303-49679033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
60, 111
               

               
Conread position:
               
177-444
               

               
Cow position:
               
chr3:9117203-9116920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
41, 237
               

               
Conread position:
               
177-445
               

               
Cow position:
               
chr3:65019684-65019974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
28, 232
               

               
Conread position:
               
177-465
               

               
Cow position:
               
chr3:73299234-73298958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
177-475
               

               
Cow position:
               
chr3:74846556-74846849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
152, 64
               

               
Conread position:
               
177-504
               

               
Cow position:
               
chr3:29891237-29891580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
71, 106
               

               
Conread position:
               
177-515
               

               
Cow position:
               
chr3:64172591-64172267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
136, 61
               

               
Conread position:
               
178-328
               

               
Cow position:
               
chr3:62370225-62370067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
69, 147
               

               
Conread position:
               
178-328
               

               
Cow position:
               
chr3:83199681-83199523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
178-330
               

               
Cow position:
               
chr3:62312966-62312807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
69, 147
               

               
Conread position:
               
178-384
               

               
Cow position:
               
chr3:26603378-26603602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
178-515
               

               
Cow position:
               
chr3:82055960-82056296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
257, 58
               

               
Conread position:
               
179-363
               

               
Cow position:
               
chr3:29188427-29188622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
179-385
               

               
Cow position:
               
chr3:2641051-2640859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
195, 62
               

               
Conread position:
               
180-310
               

               
Cow position:
               
chr3:5821287-5821423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
180-326
               

               
Cow position:
               
chr3:74500423-74500275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
180-328
               

               
Cow position:
               
chr3:10844216-10844365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
67, 18
               

               
Conread position:
               
180-396
               

               
Cow position:
               
chr3:18001352-18001139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
143, 25
               

               
Conread position:
               
180-425
               

               
Cow position:
               
chr3:1889940-1890197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
68, 157
               

               
Conread position:
               
180-428
               

               
Cow position:
               
chr3:59299739-59299488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 214
               

               
Conread position:
               
180-471
               

               
Cow position:
               
chr3:7662023-7661718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 182
               

               
Conread position:
               
180-477
               

               
Cow position:
               
chr3:47417405-47417706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
68, 105
               

               
Conread position:
               
180-477
               

               
Cow position:
               
chr3:71238642-71238333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
16, 167
               

               
Conread position:
               
180-483
               

               
Cow position:
               
chr3:34271065-34270769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
111, 57
               

               
Conread position:
               
180-500
               

               
Cow position:
               
chr3:12978449-12978780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
60, 230
               

               
Conread position:
               
180-505
               

               
Cow position:
               
chr3:65969340-65968990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
180-515
               

               
Cow position:
               
chr3:72586-72236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
142, 69
               

               
Conread position:
               
180-515
               

               
Cow position:
               
chr3:17221967-17222322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
180-515
               

               
Cow position:
               
chr3:38864284-38863937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 56
               

               
Conread position:
               
180-515
               

               
Cow position:
               
chr3:54946287-54945950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 17
               

               
Conread position:
               
180-515
               

               
Cow position:
               
chr3:57274224-57273888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 36
               

               
Conread position:
               
181-328
               

               
Cow position:
               
chr3:68624384-68624229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
181-373
               

               
Cow position:
               
chr3:82366294-82366093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
61, 176
               

               
Conread position:
               
182-324
               

               
Cow position:
               
chr3:32248178-32248027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
65, 101
               

               
Conread position:
               
182-368
               

               
Cow position:
               
chr3:77276301-77276489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
147, 138
               

               
Conread position:
               
182-378
               

               
Cow position:
               
chr3:8556677-8556875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
68, 105
               

               
Conread position:
               
182-428
               

               
Cow position:
               
chr3:51609020-51609276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
68, 178
               

               
Conread position:
               
182-482
               

               
Cow position:
               
chr3:79196927-79196614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 288
               

               
Conread position:
               
182-515
               

               
Cow position:
               
chr3:59000599-59000926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 134
               

               
Conread position:
               
183-320
               

               
Cow position:
               
chr3:77665391-77665531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 131
               

               
Conread position:
               
183-328
               

               
Cow position:
               
chr3:10115458-10115310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
66, 117
               

               
Conread position:
               
183-388
               

               
Cow position:
               
chr3:1028484-1028697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
82, 181
               

               
Conread position:
               
183-392
               

               
Cow position:
               
chr3:74787588-74787377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
55, 8
               

               
Conread position:
               
183-427
               

               
Cow position:
               
chr3:31349945-31350194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 220
               

               
Conread position:
               
183-434
               

               
Cow position:
               
chr3:19626345-19626605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
64, 25
               

               
Conread position:
               
183-446
               

               
Cow position:
               
chr3:75238623-75238348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
64, 217
               

               
Conread position:
               
183-491
               

               
Cow position:
               
chr3:19793427-19793747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
61, 125
               

               
Conread position:
               
183-503
               

               
Cow position:
               
chr3:53046495-53046825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 162
               

               
Conread position:
               
183-514
               

               
Cow position:
               
chr3:74079475-74079816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 140
               

               
Conread position:
               
183-515
               

               
Cow position:
               
chr3:2036467-2036120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
60, 245
               

               
Conread position:
               
183-515
               

               
Cow position:
               
chr3:66900564-66900920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
67, 13
               

               
Conread position:
               
183-516
               

               
Cow position:
               
chr3:58540354-58540708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
52, 212
               

               
Conread position:
               
184-325
               

               
Cow position:
               
chr3:53552822-53552964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 140
               

               
Conread position:
               
184-335
               

               
Cow position:
               
chr3:6579642-6579490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
61, 18
               

               
Conread position:
               
184-358
               

               
Cow position:
               
chr3:25290005-25289826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
184-386
               

               
Cow position:
               
chr3:82173909-82174108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
146, 65
               

               
Conread position:
               
184-417
               

               
Cow position:
               
chr3:48477881-48478110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
63, 19
               

               
Conread position:
               
184-514
               

               
Cow position:
               
chr3:74119268-74119619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
53, 21
               

               
Conread position:
               
184-515
               

               
Cow position:
               
chr3:7566259-7566597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 263
               

               
Conread position:
               
185-350
               

               
Cow position:
               
chr3:5003793-5003622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
185-397
               

               
Cow position:
               
chr3:18607824-18607610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
144, 62
               

               
Conread position:
               
185-399
               

               
Cow position:
               
chr3:81909458-81909675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
102, 39
               

               
Conread position:
               
185-404
               

               
Cow position:
               
chr3:53083822-53084054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
59, 217
               

               
Conread position:
               
185-505
               

               
Cow position:
               
chr3:70334531-70334872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
59, 173
               

               
Conread position:
               
185-515
               

               
Cow position:
               
chr3:45647827-45647502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 64
               

               
Conread position:
               
186-300
               

               
Cow position:
               
chr3:37848696-37848809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
186-393
               

               
Cow position:
               
chr3:39988092-39988291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
186-505
               

               
Cow position:
               
chr3:11987488-11987159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
56, 214
               

               
Conread position:
               
187-358
               

               
Cow position:
               
chr3:4317951-4318117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
48, 27
               

               
Conread position:
               
187-501
               

               
Cow position:
               
chr3:4050340-4050028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
36, 50
               

               
Conread position:
               
187-515
               

               
Cow position:
               
chr3:60265100-60265420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 206
               

               
Conread position:
               
187-515
               

               
Cow position:
               
chr3:68627528-68627859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 131
               

               
Conread position:
               
188-318
               

               
Cow position:
               
chr3:72556923-72556791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
63, 42
               

               
Conread position:
               
188-417
               

               
Cow position:
               
chr3:11640894-11640650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
56, 221
               

               
Conread position:
               
189-427
               

               
Cow position:
               
chr3:84250392-84250633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
68, 140
               

               
Conread position:
               
190-464
               

               
Cow position:
               
chr3:56678191-56678481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
49, 96
               

               
Conread position:
               
190-515
               

               
Cow position:
               
chr3:73442947-73443265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 34
               

               
Conread position:
               
191-368
               

               
Cow position:
               
chr3:35239166-35238982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
43, 99
               

               
Conread position:
               
194-376
               

               
Cow position:
               
chr3:82123401-82123587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
53, 22
               

               
Conread position:
               
196-506
               

               
Cow position:
               
chr3:25945245-25944912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
52, 27
               

               
Conread position:
               
196-514
               

               
Cow position:
               
chr3:80565115-80564786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 182
               

               
Conread position:
               
198-363
               

               
Cow position:
               
chr3:73162248-73162412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 29
               

               
Conread position:
               
200-361
               

               
Cow position:
               
chr3:19788685-19788854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
200-500
               

               
Cow position:
               
chr3:55010025-55010329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
125, 120
               

               
Conread position:
               
200-515
               

               
Cow position:
               
chr3:44102113-44101791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
50, 76
               

               
Conread position:
               
200-515
               

               
Cow position:
               
chr3:72391234-72390906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
48, 203
               

               
Conread position:
               
201-386
               

               
Cow position:
               
chr3:16505339-16505524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
55, 123
               

               
Conread position:
               
205-329
               

               
Cow position:
               
chr3:35582982-35582851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
208-499
               

               
Cow position:
               
chr3:77271140-77271435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
35, 184
               

               
Conread position:
               
208-505
               

               
Cow position:
               
chr3:48578971-48578668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
50, 134
               

               
Conread position:
               
208-514
               

               
Cow position:
               
chr3:15751576-15751899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
29, 61
               

               
Conread position:
               
209-390
               

               
Cow position:
               
chr3:15080530-15080710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
43, 61
               

               
Conread position:
               
209-495
               

               
Cow position:
               
chr3:26681678-26681956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
33, 120
               

               
Conread position:
               
210-429
               

               
Cow position:
               
chr3:32409356-32409120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
41, 205
               

               
Conread position:
               
210-515
               

               
Cow position:
               
chr3:67930055-67930360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
41, 24
               

               
Conread position:
               
212-498
               

               
Cow position:
               
chr3:59101950-59101667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
207, 19
               

               
Conread position:
               
216-514
               

               
Cow position:
               
chr3:58767386-58767091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
106, 34
               

               
Conread position:
               
217-389
               

               
Cow position:
               
chr3:10026571-10026737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
217-515
               

               
Cow position:
               
chr3:73709176-73708870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
29, 57
               

               
Conread position:
               
218-515
               

               
Cow position:
               
chr3:6690131-6689820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
24, 65
               

               
Conread position:
               
220-505
               

               
Cow position:
               
chr3:19404419-19404148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
38, 53
               

               
Conread position:
               
221-515
               

               
Cow position:
               
chr3:20677724-20678013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 28
               

               
Conread position:
               
225-505
               

               
Cow position:
               
chr3:42423213-42423502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
9, 25
               

               
Conread position:
               
225-515
               

               
Cow position:
               
chr3:49139924-49140220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 20
               

               
Conread position:
               
225-515
               

               
Cow position:
               
chr3:55835704-55836003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
226-515
               

               
Cow position:
               
chr3:116304-116019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 16
               

               
Conread position:
               
226-515
               

               
Cow position:
               
chr3:82461296-82461001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
25, 168
               

               
Conread position:
               
228-466
               

               
Cow position:
               
chr3:73461083-73460840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
16, 82
               

               
Conread position:
               
229-462
               

               
Cow position:
               
chr3:54290399-54290635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
9, 211
               

               
Conread position:
               
230-448
               

               
Cow position:
               
chr3:7428107-7427892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
232-388
               

               
Cow position:
               
chr3:8901738-8901579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
19, 94
               

               
Conread position:
               
232-515
               

               
Cow position:
               
chr3:8394055-8393761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
16, 284
               

               
Conread position:
               
232-515
               

               
Cow position:
               
chr3:66292067-66292357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 188
               

               
Conread position:
               
234-392
               

               
Cow position:
               
chr3:41652482-41652321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
234-504
               

               
Cow position:
               
chr3:48296805-48296542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
23, 133
               

               
Conread position:
               
234-514
               

               
Cow position:
               
chr3:35852363-35852641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
15, 191
               

               
Conread position:
               
234-514
               

               
Cow position:
               
chr3:81371756-81371470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 141
               

               
Conread position:
               
234-515
               

               
Cow position:
               
chr3:27696875-27697157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
96, 17
               

               
Conread position:
               
235-514
               

               
Cow position:
               
chr3:80053438-80053721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
87, 42
               

               
Conread position:
               
236-368
               

               
Cow position:
               
chr3:24372026-24371891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
236-508
               

               
Cow position:
               
chr3:19006760-19006492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
111, 15
               

               
Conread position:
               
237-328
               

               
Cow position:
               
chr3:27670515-27670425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
92
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
237-328
               

               
Cow position:
               
chr3:53256631-53256540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
92
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
237-338
               

               
Cow position:
               
chr3:20175152-20175047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
237-339
               

               
Cow position:
               
chr3:81547204-81547101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 38
               

               
Conread position:
               
237-368
               

               
Cow position:
               
chr3:58384197-58384056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
237-383
               

               
Cow position:
               
chr3:59920131-59919986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
14, 116
               

               
Conread position:
               
237-386
               

               
Cow position:
               
chr3:64648594-64648443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
86, 12
               

               
Conread position:
               
237-388
               

               
Cow position:
               
chr3:10104144-10103990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
16, 84
               

               
Conread position:
               
237-417
               

               
Cow position:
               
chr3:4481046-4480862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
14, 121
               

               
Conread position:
               
237-425
               

               
Cow position:
               
chr3:15173185-15172991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
11, 166
               

               
Conread position:
               
237-425
               

               
Cow position:
               
chr3:22716192-22716388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
237-427
               

               
Cow position:
               
chr3:44330335-44330527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
86, 12
               

               
Conread position:
               
237-447
               

               
Cow position:
               
chr3:10677528-10677743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
14, 177
               

               
Conread position:
               
237-475
               

               
Cow position:
               
chr3:63177586-63177339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
237-484
               

               
Cow position:
               
chr3:1785140-1785389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
15, 166
               

               
Conread position:
               
237-495
               

               
Cow position:
               
chr3:61144198-61143942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
22, 98
               

               
Conread position:
               
237-496
               

               
Cow position:
               
chr3:79645326-79645603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 157
               

               
Conread position:
               
237-498
               

               
Cow position:
               
chr3:53508713-53508460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
86, 12
               

               
Conread position:
               
237-500
               

               
Cow position:
               
chr3:80581759-80581500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
14, 97
               

               
Conread position:
               
237-501
               

               
Cow position:
               
chr3:59883966-59884237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
92, 153
               

               
Conread position:
               
237-503
               

               
Cow position:
               
chr3:49790710-49790977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
93, 13
               

               
Conread position:
               
237-504
               

               
Cow position:
               
chr3:31206982-31206705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
12, 179
               

               
Conread position:
               
237-505
               

               
Cow position:
               
chr3:24935468-24935203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
237-505
               

               
Cow position:
               
chr3:59621544-59621811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
14, 155
               

               
Conread position:
               
237-505
               

               
Cow position:
               
chr3:70899994-70899727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 52
               

               
Conread position:
               
237-512
               

               
Cow position:
               
chr3:67704650-67704367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 115
               

               
Conread position:
               
237-515
               

               
Cow position:
               
chr3:2680617-2680338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
13, 148
               

               
Conread position:
               
237-515
               

               
Cow position:
               
chr3:5100670-5100945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
97, 12
               

               
Conread position:
               
237-515
               

               
Cow position:
               
chr3:17447511-17447786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 142
               

               
Conread position:
               
237-515
               

               
Cow position:
               
chr3:57624566-57624285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
92, 12
               

               
Conread position:
               
237-515
               

               
Cow position:
               
chr3:66883841-66884119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
182, 90
               

               
Conread position:
               
237-515
               

               
Cow position:
               
chr3:80072233-80071948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
237-515
               

               
Cow position:
               
chr3:81470994-81471279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
93, 12
               

               
Conread position:
               
237-523
               

               
Cow position:
               
chr3:26874693-26874405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 96
               

               
Conread position:
               
238-328
               

               
Cow position:
               
chr3:28556061-28556150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
91
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
238-384
               

               
Cow position:
               
chr3:38100246-38100094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
238-393
               

               
Cow position:
               
chr3:33693922-33693764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
13, 141
               

               
Conread position:
               
238-396
               

               
Cow position:
               
chr3:21997685-21997846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
14, 154
               

               
Conread position:
               
238-410
               

               
Cow position:
               
chr3:74801963-74802139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
16, 160
               

               
Conread position:
               
238-445
               

               
Cow position:
               
chr3:55984199-55983986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
85, 11
               

               
Conread position:
               
238-494
               

               
Cow position:
               
chr3:8733256-8733513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
17, 85
               

               
Conread position:
               
238-515
               

               
Cow position:
               
chr3:12711814-12712097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
92, 11
               

               
Conread position:
               
238-515
               

               
Cow position:
               
chr3:17934836-17935112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
92, 158
               

               
Conread position:
               
238-515
               

               
Cow position:
               
chr3:74134805-74134527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
77, 11
               

               
Conread position:
               
239-443
               

               
Cow position:
               
chr3:23667720-23667515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
91, 10
               

               
Conread position:
               
239-504
               

               
Cow position:
               
chr3:30222292-30222018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
239-515
               

               
Cow position:
               
chr3:27940043-27940306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
239-515
               

               
Cow position:
               
chr3:45534199-45534474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 17
               

               
Conread position:
               
239-515
               

               
Cow position:
               
chr3:63269323-63269047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
88, 28
               

               
Conread position:
               
240-417
               

               
Cow position:
               
chr3:3478156-3478334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
43, 9
               

               
Conread position:
               
240-447
               

               
Cow position:
               
chr3:27727731-27727940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
82, 100
               

               
Conread position:
               
240-466
               

               
Cow position:
               
chr3:16254742-16254953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
113, 16
               

               
Conread position:
               
240-477
               

               
Cow position:
               
chr3:73820271-73820510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
89, 20
               

               
Conread position:
               
240-479
               

               
Cow position:
               
chr3:17235118-17235351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
83, 10
               

               
Conread position:
               
240-482
               

               
Cow position:
               
chr3:62789076-62789325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
91, 9
               

               
Conread position:
               
240-504
               

               
Cow position:
               
chr3:79292928-79292662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
8, 21
               

               
Conread position:
               
240-506
               

               
Cow position:
               
chr3:3738580-3738319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 9
               

               
Conread position:
               
240-515
               

               
Cow position:
               
chr3:13507569-13507290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 269
               

               
Conread position:
               
240-515
               

               
Cow position:
               
chr3:15752537-15752809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
63, 9
               

               
Conread position:
               
240-515
               

               
Cow position:
               
chr3:57760597-57760320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
82, 9
               

               
Conread position:
               
240-515
               

               
Cow position:
               
chr3:70565638-70565916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 133
               

               
Conread position:
               
240-525
               

               
Cow position:
               
chr3:74243091-74242809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 9
               

               
Conread position:
               
241-403
               

               
Cow position:
               
chr3:20334109-20333940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
242-386
               

               
Cow position:
               
chr3:56704222-56704370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
242-504
               

               
Cow position:
               
chr3:26921007-26920741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
53, 15
               

               
Conread position:
               
242-508
               

               
Cow position:
               
chr3:39171391-39171654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
177, 17
               

               
Conread position:
               
242-509
               

               
Cow position:
               
chr3:5097305-5097031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
87, 153
               

               
Conread position:
               
242-511
               

               
Cow position:
               
chr3:76387511-76387773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
135, 25
               

               
Conread position:
               
242-512
               

               
Cow position:
               
chr3:70401995-70401727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
10, 78
               

               
Conread position:
               
242-515
               

               
Cow position:
               
chr3:75045777-75046053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
8, 94
               

               
Conread position:
               
243-513
               

               
Cow position:
               
chr3:56059909-56059630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
243-515
               

               
Cow position:
               
chr3:38691308-38691584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
10, 154
               

               
Conread position:
               
244-493
               

               
Cow position:
               
chr3:32183923-32184177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
58, 28
               

               
Conread position:
               
247-515
               

               
Cow position:
               
chr3:2216462-2216185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
5, 103
               

               
Conread position:
               
249-415
               

               
Cow position:
               
chr3:36672720-36672886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
63, 150
               

               
Conread position:
               
249-497
               

               
Cow position:
               
chr3:58973386-58973143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
80, 14
               

               
Conread position:
               
249-509
               

               
Cow position:
               
chr3:31850286-31850542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
225, 79
               

               
Conread position:
               
249-512
               

               
Cow position:
               
chr3:49650479-49650210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
80, 102
               

               
Conread position:
               
249-513
               

               
Cow position:
               
chr3:26960497-26960767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
81, 148
               

               
Conread position:
               
249-514
               

               
Cow position:
               
chr3:26218962-26219226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 18
               

               
Conread position:
               
249-514
               

               
Cow position:
               
chr3:59208885-59208637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
164, 33
               

               
Conread position:
               
249-515
               

               
Cow position:
               
chr3:14626059-14626336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
81, 152
               

               
Conread position:
               
249-515
               

               
Cow position:
               
chr3:53113266-53112995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
81, 102
               

               
Conread position:
               
249-515
               

               
Cow position:
               
chr3:55271954-55272223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 152
               

               
Conread position:
               
249-515
               

               
Cow position:
               
chr3:62826528-62826797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 66
               

               
Conread position:
               
249-515
               

               
Cow position:
               
chr3:78945748-78946011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
46, 82
               

               
Conread position:
               
250-392
               

               
Cow position:
               
chr3:51349913-51349768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
250-508
               

               
Cow position:
               
chr3:11712055-11711786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
250-515
               

               
Cow position:
               
chr3:15506538-15506273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 172
               

               
Conread position:
               
251-429
               

               
Cow position:
               
chr3:2067983-2067802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
251-500
               

               
Cow position:
               
chr3:45648219-45647969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
168, 69
               

               
Conread position:
               
251-514
               

               
Cow position:
               
chr3:72168642-72168894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
62, 9
               

               
Conread position:
               
251-515
               

               
Cow position:
               
chr3:36671906-36672177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
168, 64
               

               
Conread position:
               
251-515
               

               
Cow position:
               
chr3:55085081-55085362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
18, 8
               

               
Conread position:
               
252-363
               

               
Cow position:
               
chr3:16601530-16601416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
252-500
               

               
Cow position:
               
chr3:49383037-49382785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
77, 131
               

               
Conread position:
               
252-513
               

               
Cow position:
               
chr3:83815700-83815965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
74, 49
               

               
Conread position:
               
252-515
               

               
Cow position:
               
chr3:10347443-10347177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 147
               

               
Conread position:
               
254-505
               

               
Cow position:
               
chr3:38347276-38347034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
219, 130
               

               
Conread position:
               
254-515
               

               
Cow position:
               
chr3:34669647-34669906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
103, 68
               

               
Conread position:
               
257-382
               

               
Cow position:
               
chr3:50593832-50593957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
257-500
               

               
Cow position:
               
chr3:50069846-50069601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
68, 95
               

               
Conread position:
               
257-516
               

               
Cow position:
               
chr3:59799331-59799068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 146
               

               
Conread position:
               
259-491
               

               
Cow position:
               
chr3:25755101-25754872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
26, 58
               

               
Conread position:
               
259-504
               

               
Cow position:
               
chr3:55109532-55109782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 241
               

               
Conread position:
               
259-515
               

               
Cow position:
               
chr3:74502244-74502500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
69, 93
               

               
Conread position:
               
260-515
               

               
Cow position:
               
chr3:4032043-4031792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
147, 55
               

               
Conread position:
               
260-515
               

               
Cow position:
               
chr3:61840355-61840100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
159, 68
               

               
Conread position:
               
260-515
               

               
Cow position:
               
chr3:72676171-72675914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
70, 143
               

               
Conread position:
               
261-434
               

               
Cow position:
               
chr3:3472119-3471942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
67, 108
               

               
Conread position:
               
261-503
               

               
Cow position:
               
chr3:56298-56541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
69, 136
               

               
Conread position:
               
261-515
               

               
Cow position:
               
chr3:58968824-58969079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 130
               

               
Conread position:
               
263-515
               

               
Cow position:
               
chr3:49218226-49218493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
53, 144
               

               
Conread position:
               
264-500
               

               
Cow position:
               
chr3:76015368-76015127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
56, 139
               

               
Conread position:
               
265-515
               

               
Cow position:
               
chr3:3638253-3638008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
153, 68
               

               
Conread position:
               
266-515
               

               
Cow position:
               
chr3:7940483-7940734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
129, 72
               

               
Conread position:
               
267-515
               

               
Cow position:
               
chr3:75711379-75711133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 118
               

               
Conread position:
               
269-511
               

               
Cow position:
               
chr3:12287293-12287061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
150, 52
               

               
Conread position:
               
269-515
               

               
Cow position:
               
chr3:23444817-23445072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
57, 159
               

               
Conread position:
               
271-426
               

               
Cow position:
               
chr3:70614418-70614574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
277-434
               

               
Cow position:
               
chr3:46108881-46108718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
48, 75
               

               
Conread position:
               
277-437
               

               
Cow position:
               
chr3:54030344-54030180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
277-515
               

               
Cow position:
               
chr3:73759454-73759694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
52, 134
               

               
Conread position:
               
278-463
               

               
Cow position:
               
chr3:12670553-12670741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
52, 30
               

               
Conread position:
               
282-515
               

               
Cow position:
               
chr3:34937902-34937665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
71, 40
               

               
Conread position:
               
283-513
               

               
Cow position:
               
chr3:66609787-66610019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
44, 61
               

               
Conread position:
               
284-489
               

               
Cow position:
               
chr3:46350727-46350518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 25
               

               
Conread position:
               
285-515
               

               
Cow position:
               
chr3:65800640-65800417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
151, 58
               

               
Conread position:
               
286-508
               

               
Cow position:
               
chr3:81277638-81277870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
31, 124
               

               
Conread position:
               
286-514
               

               
Cow position:
               
chr3:72019170-72018938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
114, 136
               

               
Conread position:
               
287-514
               

               
Cow position:
               
chr3:31046899-31047128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
42, 36
               

               
Conread position:
               
287-515
               

               
Cow position:
               
chr3:74878536-74878768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
42, 104
               

               
Conread position:
               
289-505
               

               
Cow position:
               
chr3:34294217-34294453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
295-506
               

               
Cow position:
               
chr3:56523401-56523599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
123, 22
               

               
Conread position:
               
295-515
               

               
Cow position:
               
chr3:56301313-56301522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
297-515
               

               
Cow position:
               
chr3:19708065-19708283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
111, 37
               

               
Conread position:
               
297-515
               

               
Cow position:
               
chr3:22820614-22820390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
300-427
               

               
Cow position:
               
chr3:22643464-22643337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
119, 93
               

               
Conread position:
               
313-515
               

               
Cow position:
               
chr3:77665743-77665954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
17, 43
               

               
Conread position:
               
323-515
               

               
Cow position:
               
chr3:83201511-83201702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
86, 64
               

               
Conread position:
               
324-483
               

               
Cow position:
               
chr3:75105070-75105231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
69, 78
               

               
Conread position:
               
324-509
               

               
Cow position:
               
chr3:21340948-21341136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
68, 17
               

               
Conread position:
               
324-515
               

               
Cow position:
               
chr3:49793409-49793225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
325-515
               

               
Cow position:
               
chr3:5850917-5851102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
94, 72
               

               
Conread position:
               
341-500
               

               
Cow position:
               
chr3:74409481-74409319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
350-515
               

               
Cow position:
               
chr3:31501335-31501173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 25
               

               
Conread position:
               
351-515
               

               
Cow position:
               
chr3:19789128-19789292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
71, 52
               

               
Conread position:
               
351-515
               

               
Cow position:
               
chr3:77496815-77496643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
355-515
               

               
Cow position:
               
chr3:27212346-27212184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
53, 38
               

               
Conread position:
               
364-515
               

               
Cow position:
               
chr3:22924437-22924586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
55, 34
               

               
Conread position:
               
365-515
               

               
Cow position:
               
chr3:61190952-61191102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
48, 33
               
Show alignments to all cow chromosomes.