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Cow genome map

           
Conread name:
           
Ova1-OVRM10096F06
        

               
Conread position:
               
125-644
               

               
Cow position:
               
chr1:23100129-23099629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
11, 94
               

               
Conread position:
               
127-623
               

               
Cow position:
               
chr1:56477823-56477348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 19
               

               
Conread position:
               
129-604
               

               
Cow position:
               
chr1:43357764-43358243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
64, 19
               

               
Conread position:
               
130-605
               

               
Cow position:
               
chr1:55705012-55705483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
175, 29
               

               
Conread position:
               
130-630
               

               
Cow position:
               
chr1:38277788-38278299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 36
               

               
Conread position:
               
132-456
               

               
Cow position:
               
chr1:3815443-3815778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
100, 80
               

               
Conread position:
               
132-630
               

               
Cow position:
               
chr1:53521143-53520652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 61
               

               
Conread position:
               
132-630
               

               
Cow position:
               
chr1:83982139-83982631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
100, 38
               

               
Conread position:
               
132-631
               

               
Cow position:
               
chr1:49433024-49433525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
113, 16
               

               
Conread position:
               
135-630
               

               
Cow position:
               
chr1:78092273-78091778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
119, 13
               

               
Conread position:
               
140-636
               

               
Cow position:
               
chr1:53374656-53374175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 30
               

               
Conread position:
               
147-634
               

               
Cow position:
               
chr1:39426795-39427239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
148-636
               

               
Cow position:
               
chr1:25383892-25383399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 219
               

               
Conread position:
               
149-636
               

               
Cow position:
               
chr1:101916388-101915909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
58, 19
               

               
Conread position:
               
150-628
               

               
Cow position:
               
chr1:874883-874391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
65, 345
               

               
Conread position:
               
150-630
               

               
Cow position:
               
chr1:76470877-76470405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 83
               

               
Conread position:
               
151-533
               

               
Cow position:
               
chr1:14308809-14309198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
19, 128
               

               
Conread position:
               
152-385
               

               
Cow position:
               
chr1:6381994-6381756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
80, 143
               

               
Conread position:
               
152-562
               

               
Cow position:
               
chr1:63530777-63530394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
98, 241
               

               
Conread position:
               
154-568
               

               
Cow position:
               
chr1:83072657-83072251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
9, 22
               

               
Conread position:
               
154-625
               

               
Cow position:
               
chr1:3324090-3323609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 132
               

               
Conread position:
               
154-631
               

               
Cow position:
               
chr1:101714337-101713861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
24, 172
               

               
Conread position:
               
155-413
               

               
Cow position:
               
chr1:73721580-73721316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
16, 114
               

               
Conread position:
               
157-625
               

               
Cow position:
               
chr1:25793245-25793689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
230, 77
               

               
Conread position:
               
157-630
               

               
Cow position:
               
chr1:72011611-72012057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 12
               

               
Conread position:
               
158-391
               

               
Cow position:
               
chr1:2462583-2462361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
93, 44
               

               
Conread position:
               
158-489
               

               
Cow position:
               
chr1:65318790-65318454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
6, 120
               

               
Conread position:
               
158-493
               

               
Cow position:
               
chr1:23186591-23186922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
232, 12
               

               
Conread position:
               
158-493
               

               
Cow position:
               
chr1:39224727-39225050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 73
               

               
Conread position:
               
158-560
               

               
Cow position:
               
chr1:68763473-68763866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 12
               

               
Conread position:
               
158-626
               

               
Cow position:
               
chr1:22729264-22728797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 11
               

               
Conread position:
               
158-634
               

               
Cow position:
               
chr1:45019597-45020061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 18
               

               
Conread position:
               
159-352
               

               
Cow position:
               
chr1:64458184-64457982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
159-382
               

               
Cow position:
               
chr1:97144259-97144477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
5, 71
               

               
Conread position:
               
159-390
               

               
Cow position:
               
chr1:242761-242536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
159-440
               

               
Cow position:
               
chr1:186072-186348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
57, 10
               

               
Conread position:
               
159-445
               

               
Cow position:
               
chr1:102754061-102753776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
200, 19
               

               
Conread position:
               
159-459
               

               
Cow position:
               
chr1:49824854-49825160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
159-466
               

               
Cow position:
               
chr1:30189367-30189049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
84, 11
               

               
Conread position:
               
159-489
               

               
Cow position:
               
chr1:88913531-88913197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
90, 157
               

               
Conread position:
               
159-493
               

               
Cow position:
               
chr1:91023256-91023593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
7, 41
               

               
Conread position:
               
159-535
               

               
Cow position:
               
chr1:86110534-86110894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
90, 34
               

               
Conread position:
               
159-550
               

               
Cow position:
               
chr1:90621295-90621689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
72, 58
               

               
Conread position:
               
159-560
               

               
Cow position:
               
chr1:484251-484650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
5, 260
               

               
Conread position:
               
159-568
               

               
Cow position:
               
chr1:26178597-26179007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
91, 294
               

               
Conread position:
               
159-584
               

               
Cow position:
               
chr1:21955160-21955582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
6, 110
               

               
Conread position:
               
159-585
               

               
Cow position:
               
chr1:75383174-75382782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 72
               

               
Conread position:
               
159-624
               

               
Cow position:
               
chr1:78857115-78857570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 236
               

               
Conread position:
               
159-625
               

               
Cow position:
               
chr1:68618729-68619186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 28
               

               
Conread position:
               
159-629
               

               
Cow position:
               
chr1:81568818-81569289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 257
               

               
Conread position:
               
159-630
               

               
Cow position:
               
chr1:23968853-23969291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 70
               

               
Conread position:
               
159-630
               

               
Cow position:
               
chr1:31934713-31934259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 10
               

               
Conread position:
               
159-630
               

               
Cow position:
               
chr1:34160039-34159578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 72
               

               
Conread position:
               
159-630
               

               
Cow position:
               
chr1:36998391-36997943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 10
               

               
Conread position:
               
159-630
               

               
Cow position:
               
chr1:41056888-41056430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
73, 10
               

               
Conread position:
               
159-630
               

               
Cow position:
               
chr1:82936394-82936836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
318, 31
               

               
Conread position:
               
159-636
               

               
Cow position:
               
chr1:96964528-96964059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 10
               

               
Conread position:
               
159-636
               

               
Cow position:
               
chr1:99642157-99642630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 203
               

               
Conread position:
               
159-646
               

               
Cow position:
               
chr1:196797-197272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
72, 10
               

               
Conread position:
               
160-353
               

               
Cow position:
               
chr1:5872564-5872763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
160-357
               

               
Cow position:
               
chr1:89297897-89298098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
34, 138
               

               
Conread position:
               
160-357
               

               
Cow position:
               
chr1:89301506-89301707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
34, 138
               

               
Conread position:
               
160-358
               

               
Cow position:
               
chr1:81638746-81638559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
160-444
               

               
Cow position:
               
chr1:35671746-35671466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
237, 97
               

               
Conread position:
               
160-493
               

               
Cow position:
               
chr1:24777774-24778110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
67, 149
               

               
Conread position:
               
160-493
               

               
Cow position:
               
chr1:86056868-86057183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
313, 95
               

               
Conread position:
               
160-493
               

               
Cow position:
               
chr1:100817751-100817431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
92, 121
               

               
Conread position:
               
160-497
               

               
Cow position:
               
chr1:31272244-31272570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
238, 18
               

               
Conread position:
               
160-526
               

               
Cow position:
               
chr1:62519576-62519204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
72, 129
               

               
Conread position:
               
160-568
               

               
Cow position:
               
chr1:43340423-43340815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 119
               

               
Conread position:
               
160-568
               

               
Cow position:
               
chr1:43872099-43872527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 108
               

               
Conread position:
               
160-568
               

               
Cow position:
               
chr1:68863229-68862843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
236, 68
               

               
Conread position:
               
160-615
               

               
Cow position:
               
chr1:14980928-14981357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 71
               

               
Conread position:
               
160-625
               

               
Cow position:
               
chr1:68855376-68854926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
72, 242
               

               
Conread position:
               
160-626
               

               
Cow position:
               
chr1:36880498-36880028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
15, 105
               

               
Conread position:
               
160-626
               

               
Cow position:
               
chr1:100399993-100400451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
18, 118
               

               
Conread position:
               
160-626
               

               
Cow position:
               
chr1:101822294-101822746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
71, 116
               

               
Conread position:
               
160-629
               

               
Cow position:
               
chr1:97622029-97622451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
379, 49
               

               
Conread position:
               
160-630
               

               
Cow position:
               
chr1:61391586-61392045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 19
               

               
Conread position:
               
161-352
               

               
Cow position:
               
chr1:63461087-63460895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
71, 99
               

               
Conread position:
               
161-358
               

               
Cow position:
               
chr1:1605922-1606127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 163
               

               
Conread position:
               
161-368
               

               
Cow position:
               
chr1:32014400-32014199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
161-370
               

               
Cow position:
               
chr1:41027281-41027074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
161-370
               

               
Cow position:
               
chr1:95156756-95156965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
161-386
               

               
Cow position:
               
chr1:102648489-102648261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
161-390
               

               
Cow position:
               
chr1:49980917-49980689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
161-394
               

               
Cow position:
               
chr1:48618038-48618273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
207, 93
               

               
Conread position:
               
161-440
               

               
Cow position:
               
chr1:30983283-30983562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
70, 174
               

               
Conread position:
               
161-452
               

               
Cow position:
               
chr1:6394766-6394475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
71, 144
               

               
Conread position:
               
161-459
               

               
Cow position:
               
chr1:82880840-82880554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
71, 95
               

               
Conread position:
               
161-468
               

               
Cow position:
               
chr1:22943818-22944125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
9, 170
               

               
Conread position:
               
161-478
               

               
Cow position:
               
chr1:628177-627853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
89, 244
               

               
Conread position:
               
161-479
               

               
Cow position:
               
chr1:56225991-56225683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 94
               

               
Conread position:
               
161-479
               

               
Cow position:
               
chr1:78794027-78794335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
161-484
               

               
Cow position:
               
chr1:78066334-78066657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
214, 70
               

               
Conread position:
               
161-489
               

               
Cow position:
               
chr1:53375541-53375215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
79, 128
               

               
Conread position:
               
161-493
               

               
Cow position:
               
chr1:22526083-22525753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 69
               

               
Conread position:
               
161-493
               

               
Cow position:
               
chr1:41115527-41115840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
203, 66
               

               
Conread position:
               
161-493
               

               
Cow position:
               
chr1:78838996-78838673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
158, 70
               

               
Conread position:
               
161-510
               

               
Cow position:
               
chr1:43311563-43311918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
88, 23
               

               
Conread position:
               
161-524
               

               
Cow position:
               
chr1:46030155-46030508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
82, 112
               

               
Conread position:
               
161-534
               

               
Cow position:
               
chr1:7748425-7748056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
70, 38
               

               
Conread position:
               
161-534
               

               
Cow position:
               
chr1:7752589-7752222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
70, 30
               

               
Conread position:
               
161-535
               

               
Cow position:
               
chr1:87095004-87095393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
71, 15
               

               
Conread position:
               
161-535
               

               
Cow position:
               
chr1:95558248-95557874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
71, 24
               

               
Conread position:
               
161-552
               

               
Cow position:
               
chr1:60281588-60281190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 259
               

               
Conread position:
               
161-554
               

               
Cow position:
               
chr1:20667541-20667920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 32
               

               
Conread position:
               
161-568
               

               
Cow position:
               
chr1:15334097-15333685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 70
               

               
Conread position:
               
161-568
               

               
Cow position:
               
chr1:28563351-28563761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
7, 181
               

               
Conread position:
               
161-598
               

               
Cow position:
               
chr1:34771290-34771726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 32
               

               
Conread position:
               
161-600
               

               
Cow position:
               
chr1:96472625-96472205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 68
               

               
Conread position:
               
161-608
               

               
Cow position:
               
chr1:6304668-6305100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 70
               

               
Conread position:
               
161-619
               

               
Cow position:
               
chr1:3962467-3962927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 253
               

               
Conread position:
               
161-621
               

               
Cow position:
               
chr1:84238911-84239352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 36
               

               
Conread position:
               
161-622
               

               
Cow position:
               
chr1:45555574-45555116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 41
               

               
Conread position:
               
161-624
               

               
Cow position:
               
chr1:3923595-3924042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 70
               

               
Conread position:
               
161-624
               

               
Cow position:
               
chr1:70538818-70538355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 73
               

               
Conread position:
               
161-625
               

               
Cow position:
               
chr1:92197663-92197211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
70, 34
               

               
Conread position:
               
161-626
               

               
Cow position:
               
chr1:10778763-10778324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 42
               

               
Conread position:
               
161-626
               

               
Cow position:
               
chr1:21787533-21787076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 55
               

               
Conread position:
               
161-626
               

               
Cow position:
               
chr1:57575555-57576013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
89, 238
               

               
Conread position:
               
161-626
               

               
Cow position:
               
chr1:100552175-100551720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 70
               

               
Conread position:
               
161-629
               

               
Cow position:
               
chr1:78811247-78810783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
96, 213
               

               
Conread position:
               
161-630
               

               
Cow position:
               
chr1:22730942-22730506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
465, 229
               

               
Conread position:
               
161-630
               

               
Cow position:
               
chr1:29626702-29627169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 17
               

               
Conread position:
               
161-630
               

               
Cow position:
               
chr1:39417922-39418372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 42
               

               
Conread position:
               
161-630
               

               
Cow position:
               
chr1:53623165-53622711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 106
               

               
Conread position:
               
161-630
               

               
Cow position:
               
chr1:86113187-86113667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 117
               

               
Conread position:
               
161-630
               

               
Cow position:
               
chr1:91065948-91066402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 70
               

               
Conread position:
               
161-630
               

               
Cow position:
               
chr1:99609576-99609112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 163
               

               
Conread position:
               
161-637
               

               
Cow position:
               
chr1:8827-8361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 246
               

               
Conread position:
               
161-644
               

               
Cow position:
               
chr1:34686374-34685927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 29
               

               
Conread position:
               
161-650
               

               
Cow position:
               
chr1:19466245-19465790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 59
               

               
Conread position:
               
162-424
               

               
Cow position:
               
chr1:81481176-81481440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
10, 71
               

               
Conread position:
               
162-426
               

               
Cow position:
               
chr1:33998957-33998699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
237, 69
               

               
Conread position:
               
162-493
               

               
Cow position:
               
chr1:27114845-27114536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
314, 37
               

               
Conread position:
               
162-493
               

               
Cow position:
               
chr1:64302042-64302373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
140, 36
               

               
Conread position:
               
162-547
               

               
Cow position:
               
chr1:40388668-40389032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
7, 56
               

               
Conread position:
               
162-568
               

               
Cow position:
               
chr1:40192495-40192870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
77, 114
               

               
Conread position:
               
162-568
               

               
Cow position:
               
chr1:71078751-71079149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
23, 97
               

               
Conread position:
               
162-588
               

               
Cow position:
               
chr1:74955824-74956236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 97
               

               
Conread position:
               
162-620
               

               
Cow position:
               
chr1:55357080-55357529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 176
               

               
Conread position:
               
162-630
               

               
Cow position:
               
chr1:13414230-13413773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
162-630
               

               
Cow position:
               
chr1:20950925-20950441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
70, 117
               

               
Conread position:
               
162-630
               

               
Cow position:
               
chr1:48105217-48105688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
69, 160
               

               
Conread position:
               
162-630
               

               
Cow position:
               
chr1:68826716-68827159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 44
               

               
Conread position:
               
162-630
               

               
Cow position:
               
chr1:71295096-71295562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
178, 31
               

               
Conread position:
               
162-630
               

               
Cow position:
               
chr1:79164874-79165346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 166
               

               
Conread position:
               
162-630
               

               
Cow position:
               
chr1:95177126-95176681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 66
               

               
Conread position:
               
162-631
               

               
Cow position:
               
chr1:48443983-48444437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 106
               

               
Conread position:
               
162-631
               

               
Cow position:
               
chr1:54478524-54478067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 67
               

               
Conread position:
               
162-634
               

               
Cow position:
               
chr1:1956130-1956587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 74
               

               
Conread position:
               
162-650
               

               
Cow position:
               
chr1:75745068-75744583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 32
               

               
Conread position:
               
163-362
               

               
Cow position:
               
chr1:20537409-20537212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
163-389
               

               
Cow position:
               
chr1:8287423-8287650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
69, 116
               

               
Conread position:
               
163-405
               

               
Cow position:
               
chr1:72422199-72422445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
69, 152
               

               
Conread position:
               
163-440
               

               
Cow position:
               
chr1:92684474-92684763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
90, 243
               

               
Conread position:
               
163-454
               

               
Cow position:
               
chr1:78079930-78079635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
105, 67
               

               
Conread position:
               
163-470
               

               
Cow position:
               
chr1:4391061-4391384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
68, 259
               

               
Conread position:
               
163-470
               

               
Cow position:
               
chr1:46031168-46030858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
68, 36
               

               
Conread position:
               
163-479
               

               
Cow position:
               
chr1:56618449-56618761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
41, 48
               

               
Conread position:
               
163-483
               

               
Cow position:
               
chr1:101866292-101866612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
18, 52
               

               
Conread position:
               
163-487
               

               
Cow position:
               
chr1:72105607-72105293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
225, 30
               

               
Conread position:
               
163-490
               

               
Cow position:
               
chr1:47790461-47790786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
227, 69
               

               
Conread position:
               
163-508
               

               
Cow position:
               
chr1:100324547-100324881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
15, 73
               

               
Conread position:
               
163-562
               

               
Cow position:
               
chr1:42397989-42398383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
136, 100
               

               
Conread position:
               
163-567
               

               
Cow position:
               
chr1:33330895-33331280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
41, 48
               

               
Conread position:
               
163-594
               

               
Cow position:
               
chr1:81228129-81228558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
145, 30
               

               
Conread position:
               
163-601
               

               
Cow position:
               
chr1:87072901-87072479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 110
               

               
Conread position:
               
163-607
               

               
Cow position:
               
chr1:10941891-10942323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
235, 68
               

               
Conread position:
               
163-607
               

               
Cow position:
               
chr1:10964495-10964063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
235, 67
               

               
Conread position:
               
163-616
               

               
Cow position:
               
chr1:44507175-44506728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 67
               

               
Conread position:
               
163-622
               

               
Cow position:
               
chr1:18936630-18937080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
66, 103
               

               
Conread position:
               
163-626
               

               
Cow position:
               
chr1:26895605-26896075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
215, 330
               

               
Conread position:
               
163-626
               

               
Cow position:
               
chr1:43352446-43352899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 188
               

               
Conread position:
               
163-630
               

               
Cow position:
               
chr1:21954020-21954472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
210, 68
               

               
Conread position:
               
163-630
               

               
Cow position:
               
chr1:52435482-52435016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
69, 246
               

               
Conread position:
               
163-630
               

               
Cow position:
               
chr1:72034721-72035183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 36
               

               
Conread position:
               
163-631
               

               
Cow position:
               
chr1:11771876-11772336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
88, 137
               

               
Conread position:
               
163-636
               

               
Cow position:
               
chr1:77620756-77620290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
88, 303
               

               
Conread position:
               
163-640
               

               
Cow position:
               
chr1:31347727-31348172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
119, 68
               

               
Conread position:
               
163-642
               

               
Cow position:
               
chr1:93110425-93110891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 61
               

               
Conread position:
               
163-644
               

               
Cow position:
               
chr1:65103836-65103367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
121, 101
               

               
Conread position:
               
164-387
               

               
Cow position:
               
chr1:101177729-101177497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
164-620
               

               
Cow position:
               
chr1:51446088-51445635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 38
               

               
Conread position:
               
166-387
               

               
Cow position:
               
chr1:95618845-95618624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
166-493
               

               
Cow position:
               
chr1:89449102-89448772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
65, 56
               

               
Conread position:
               
166-540
               

               
Cow position:
               
chr1:96081683-96081316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
15, 37
               

               
Conread position:
               
166-597
               

               
Cow position:
               
chr1:98031117-98030693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
230, 9
               

               
Conread position:
               
166-626
               

               
Cow position:
               
chr1:16766882-16767335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 96
               

               
Conread position:
               
166-634
               

               
Cow position:
               
chr1:71045939-71045497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 65
               

               
Conread position:
               
166-646
               

               
Cow position:
               
chr1:82337576-82338057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 64
               

               
Conread position:
               
167-390
               

               
Cow position:
               
chr1:63079204-63078989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
167-637
               

               
Cow position:
               
chr1:102349558-102350019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
223, 14
               

               
Conread position:
               
168-488
               

               
Cow position:
               
chr1:72813820-72813492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
10, 49
               

               
Conread position:
               
168-607
               

               
Cow position:
               
chr1:31348236-31348672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
10, 25
               

               
Conread position:
               
168-628
               

               
Cow position:
               
chr1:50930778-50931221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 161
               

               
Conread position:
               
168-642
               

               
Cow position:
               
chr1:34856422-34856893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 330
               

               
Conread position:
               
169-352
               

               
Cow position:
               
chr1:25021877-25022058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
169-354
               

               
Cow position:
               
chr1:40077991-40077808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
174, 37
               

               
Conread position:
               
169-361
               

               
Cow position:
               
chr1:70483134-70483326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
169-361
               

               
Cow position:
               
chr1:98556917-98557113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
169-387
               

               
Cow position:
               
chr1:51860363-51860579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
169-399
               

               
Cow position:
               
chr1:6731380-6731151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
202, 0
               

               
Conread position:
               
169-404
               

               
Cow position:
               
chr1:81858700-81858936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
157, 223
               

               
Conread position:
               
169-407
               

               
Cow position:
               
chr1:95835594-95835836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
169-426
               

               
Cow position:
               
chr1:22035809-22035551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
220, 86
               

               
Conread position:
               
169-430
               

               
Cow position:
               
chr1:88360086-88359819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
63, 217
               

               
Conread position:
               
169-430
               

               
Cow position:
               
chr1:101507551-101507296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
95, 51
               

               
Conread position:
               
169-447
               

               
Cow position:
               
chr1:98583949-98583679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
180, 62
               

               
Conread position:
               
169-453
               

               
Cow position:
               
chr1:15028938-15028665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
221, 48
               

               
Conread position:
               
169-455
               

               
Cow position:
               
chr1:100474440-100474145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
169-458
               

               
Cow position:
               
chr1:71665733-71666022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
62, 92
               

               
Conread position:
               
169-469
               

               
Cow position:
               
chr1:82513151-82513456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
62, 46
               

               
Conread position:
               
169-470
               

               
Cow position:
               
chr1:22824110-22823804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
63, 258
               

               
Conread position:
               
169-470
               

               
Cow position:
               
chr1:71350523-71350824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
78, 230
               

               
Conread position:
               
169-473
               

               
Cow position:
               
chr1:75250313-75250008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
63, 41
               

               
Conread position:
               
169-477
               

               
Cow position:
               
chr1:71399495-71399177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
63, 211
               

               
Conread position:
               
169-479
               

               
Cow position:
               
chr1:42482401-42482093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
24, 128
               

               
Conread position:
               
169-480
               

               
Cow position:
               
chr1:43855490-43855190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
206, 62
               

               
Conread position:
               
169-480
               

               
Cow position:
               
chr1:76612931-76613238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
62, 259
               

               
Conread position:
               
169-492
               

               
Cow position:
               
chr1:20104467-20104144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
74, 106
               

               
Conread position:
               
169-493
               

               
Cow position:
               
chr1:22192971-22192638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
169-493
               

               
Cow position:
               
chr1:35600089-35600423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
169-493
               

               
Cow position:
               
chr1:51417966-51417647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
13, 63
               

               
Conread position:
               
169-504
               

               
Cow position:
               
chr1:64572715-64572376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 0
               

               
Conread position:
               
169-529
               

               
Cow position:
               
chr1:66898293-66898663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
62, 244
               

               
Conread position:
               
169-532
               

               
Cow position:
               
chr1:42175929-42175565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
63, 116
               

               
Conread position:
               
169-535
               

               
Cow position:
               
chr1:16060807-16061181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
222, 85
               

               
Conread position:
               
169-535
               

               
Cow position:
               
chr1:38754118-38753755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
213, 63
               

               
Conread position:
               
169-544
               

               
Cow position:
               
chr1:55428752-55429128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 91
               

               
Conread position:
               
169-564
               

               
Cow position:
               
chr1:54156533-54156929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 156
               

               
Conread position:
               
169-565
               

               
Cow position:
               
chr1:12464464-12464853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
33, 62
               

               
Conread position:
               
169-567
               

               
Cow position:
               
chr1:25735069-25734662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
74, 35
               

               
Conread position:
               
169-568
               

               
Cow position:
               
chr1:84905859-84906260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
63, 109
               

               
Conread position:
               
169-602
               

               
Cow position:
               
chr1:41697255-41696828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 64
               

               
Conread position:
               
169-603
               

               
Cow position:
               
chr1:26201435-26200993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
75, 19
               

               
Conread position:
               
169-604
               

               
Cow position:
               
chr1:4691789-4691364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
72, 90
               

               
Conread position:
               
169-605
               

               
Cow position:
               
chr1:81515440-81515010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
63, 229
               

               
Conread position:
               
169-606
               

               
Cow position:
               
chr1:64803896-64804338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 260
               

               
Conread position:
               
169-607
               

               
Cow position:
               
chr1:97611472-97611884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
109, 24
               

               
Conread position:
               
169-608
               

               
Cow position:
               
chr1:70227490-70227934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
80, 243
               

               
Conread position:
               
169-616
               

               
Cow position:
               
chr1:7443183-7442745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
63, 209
               

               
Conread position:
               
169-618
               

               
Cow position:
               
chr1:55230174-55229742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
113, 86
               

               
Conread position:
               
169-619
               

               
Cow position:
               
chr1:82406332-82406796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
72, 90
               

               
Conread position:
               
169-622
               

               
Cow position:
               
chr1:102105938-102105488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
63, 111
               

               
Conread position:
               
169-625
               

               
Cow position:
               
chr1:20000555-20000998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 63
               

               
Conread position:
               
169-626
               

               
Cow position:
               
chr1:10633241-10632803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
308, 30
               

               
Conread position:
               
169-626
               

               
Cow position:
               
chr1:32341013-32341457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 62
               

               
Conread position:
               
169-626
               

               
Cow position:
               
chr1:33720305-33719864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
80, 161
               

               
Conread position:
               
169-626
               

               
Cow position:
               
chr1:35162606-35162154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 44
               

               
Conread position:
               
169-626
               

               
Cow position:
               
chr1:46839790-46839344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
222, 21
               

               
Conread position:
               
169-626
               

               
Cow position:
               
chr1:77462540-77462114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
113, 31
               

               
Conread position:
               
169-628
               

               
Cow position:
               
chr1:59519112-59518650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
113, 62
               

               
Conread position:
               
169-628
               

               
Cow position:
               
chr1:95101152-95100711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
62, 114
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr1:1878224-1877773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 209
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr1:22628455-22628893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
119, 30
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr1:24132862-24133309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 161
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr1:29935190-29935635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
193, 34
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr1:41182037-41181587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
119, 62
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr1:42887079-42887517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
308, 62
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr1:61721206-61721620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
218, 30
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr1:64678881-64678443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
49, 65
               

               
Conread position:
               
169-631
               

               
Cow position:
               
chr1:56225667-56225222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 24
               

               
Conread position:
               
169-633
               

               
Cow position:
               
chr1:47658549-47658098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 92
               

               
Conread position:
               
169-636
               

               
Cow position:
               
chr1:11853485-11853950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
74, 37
               

               
Conread position:
               
169-636
               

               
Cow position:
               
chr1:13547783-13548250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
97, 15
               

               
Conread position:
               
169-636
               

               
Cow position:
               
chr1:53370285-53369810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
63, 30
               

               
Conread position:
               
169-636
               

               
Cow position:
               
chr1:62964469-62964019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 108
               

               
Conread position:
               
169-636
               

               
Cow position:
               
chr1:81290705-81290258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
47, 64
               

               
Conread position:
               
169-637
               

               
Cow position:
               
chr1:12222403-12222866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 117
               

               
Conread position:
               
169-640
               

               
Cow position:
               
chr1:12870809-12871271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 35
               

               
Conread position:
               
169-643
               

               
Cow position:
               
chr1:61885113-61884650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
63, 92
               

               
Conread position:
               
169-644
               

               
Cow position:
               
chr1:74083987-74084457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 167
               

               
Conread position:
               
169-650
               

               
Cow position:
               
chr1:43505725-43505249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 62
               

               
Conread position:
               
170-390
               

               
Cow position:
               
chr1:77739924-77739701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
61, 108
               

               
Conread position:
               
170-402
               

               
Cow position:
               
chr1:67529256-67529022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
170-470
               

               
Cow position:
               
chr1:42541791-42541495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 23
               

               
Conread position:
               
170-492
               

               
Cow position:
               
chr1:79640089-79640414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
112, 107
               

               
Conread position:
               
170-564
               

               
Cow position:
               
chr1:33206674-33207063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 198
               

               
Conread position:
               
170-565
               

               
Cow position:
               
chr1:71228295-71227887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
62, 167
               

               
Conread position:
               
170-567
               

               
Cow position:
               
chr1:724939-724543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
72, 34
               

               
Conread position:
               
170-621
               

               
Cow position:
               
chr1:71119721-71119266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 102
               

               
Conread position:
               
170-626
               

               
Cow position:
               
chr1:63434598-63435053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 325
               

               
Conread position:
               
170-626
               

               
Cow position:
               
chr1:100422020-100421593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
62, 29
               

               
Conread position:
               
170-629
               

               
Cow position:
               
chr1:15547665-15547216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 59
               

               
Conread position:
               
170-629
               

               
Cow position:
               
chr1:21578010-21577552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
33, 216
               

               
Conread position:
               
170-633
               

               
Cow position:
               
chr1:19439807-19440275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
66, 278
               

               
Conread position:
               
170-633
               

               
Cow position:
               
chr1:69539885-69539442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 59
               

               
Conread position:
               
170-633
               

               
Cow position:
               
chr1:102266070-102266526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
234, 85
               

               
Conread position:
               
170-659
               

               
Cow position:
               
chr1:68817601-68818080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 20
               

               
Conread position:
               
171-420
               

               
Cow position:
               
chr1:500375-500121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
171-420
               

               
Cow position:
               
chr1:102768374-102768131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 22
               

               
Conread position:
               
171-451
               

               
Cow position:
               
chr1:73457895-73458176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
72, 196
               

               
Conread position:
               
171-458
               

               
Cow position:
               
chr1:96558647-96558924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
80, 110
               

               
Conread position:
               
171-502
               

               
Cow position:
               
chr1:42868751-42869069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
219, 31
               

               
Conread position:
               
171-565
               

               
Cow position:
               
chr1:49317302-49317683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
227, 82
               

               
Conread position:
               
171-602
               

               
Cow position:
               
chr1:27145445-27145880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 59
               

               
Conread position:
               
171-624
               

               
Cow position:
               
chr1:7740142-7739723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
29, 61
               

               
Conread position:
               
171-631
               

               
Cow position:
               
chr1:51394617-51394164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 95
               

               
Conread position:
               
172-626
               

               
Cow position:
               
chr1:1980912-1981360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
60, 24
               

               
Conread position:
               
173-490
               

               
Cow position:
               
chr1:3607992-3607688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
301, 58
               

               
Conread position:
               
174-565
               

               
Cow position:
               
chr1:92369947-92369539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
87, 346
               

               
Conread position:
               
175-488
               

               
Cow position:
               
chr1:47886285-47886609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
76, 172
               

               
Conread position:
               
175-608
               

               
Cow position:
               
chr1:89381469-89381046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
60, 83
               

               
Conread position:
               
175-646
               

               
Cow position:
               
chr1:19144740-19145188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
184, 56
               

               
Conread position:
               
176-382
               

               
Cow position:
               
chr1:61011369-61011168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
176-477
               

               
Cow position:
               
chr1:37726220-37726522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
34, 273
               

               
Conread position:
               
176-566
               

               
Cow position:
               
chr1:49082940-49082532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
176-573
               

               
Cow position:
               
chr1:13810845-13810451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
69, 219
               

               
Conread position:
               
176-626
               

               
Cow position:
               
chr1:63390570-63391022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
67, 102
               

               
Conread position:
               
176-629
               

               
Cow position:
               
chr1:16855507-16855941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 81
               

               
Conread position:
               
176-630
               

               
Cow position:
               
chr1:54258763-54258313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 121
               

               
Conread position:
               
177-363
               

               
Cow position:
               
chr1:78793810-78793997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
177-468
               

               
Cow position:
               
chr1:45223769-45223482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
222, 52
               

               
Conread position:
               
177-501
               

               
Cow position:
               
chr1:102756242-102756564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
297, 79
               

               
Conread position:
               
177-558
               

               
Cow position:
               
chr1:5597019-5597383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
54, 80
               

               
Conread position:
               
177-592
               

               
Cow position:
               
chr1:100741475-100741076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 165
               

               
Conread position:
               
177-597
               

               
Cow position:
               
chr1:11729365-11728956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 51
               

               
Conread position:
               
177-607
               

               
Cow position:
               
chr1:78810073-78809652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 223
               

               
Conread position:
               
177-636
               

               
Cow position:
               
chr1:77720067-77720487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
300, 54
               

               
Conread position:
               
177-644
               

               
Cow position:
               
chr1:6959072-6958611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 78
               

               
Conread position:
               
177-652
               

               
Cow position:
               
chr1:6941659-6941189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 78
               

               
Conread position:
               
178-470
               

               
Cow position:
               
chr1:31794814-31795104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
71, 155
               

               
Conread position:
               
178-476
               

               
Cow position:
               
chr1:70416568-70416864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
73, 220
               

               
Conread position:
               
178-605
               

               
Cow position:
               
chr1:24597846-24597423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
5, 33
               

               
Conread position:
               
179-487
               

               
Cow position:
               
chr1:91811976-91811668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
20, 168
               

               
Conread position:
               
179-489
               

               
Cow position:
               
chr1:17196434-17196751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
179-490
               

               
Cow position:
               
chr1:8128788-8129089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
193, 20
               

               
Conread position:
               
179-610
               

               
Cow position:
               
chr1:43388863-43389282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
202, 77
               

               
Conread position:
               
179-630
               

               
Cow position:
               
chr1:95499305-95499749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
64, 201
               

               
Conread position:
               
180-630
               

               
Cow position:
               
chr1:89509738-89510186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 51
               

               
Conread position:
               
182-607
               

               
Cow position:
               
chr1:89341792-89342224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
183-508
               

               
Cow position:
               
chr1:72068644-72068982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
184-637
               

               
Cow position:
               
chr1:1053768-1053327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
48, 130
               

               
Conread position:
               
196-568
               

               
Cow position:
               
chr1:96276879-96277247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
87, 63
               

               
Conread position:
               
196-642
               

               
Cow position:
               
chr1:57297649-57297230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
22, 42
               

               
Conread position:
               
201-622
               

               
Cow position:
               
chr1:98594733-98594325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
206-624
               

               
Cow position:
               
chr1:24534097-24534491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
270, 39
               

               
Conread position:
               
206-636
               

               
Cow position:
               
chr1:69694834-69695269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 25
               

               
Conread position:
               
207-623
               

               
Cow position:
               
chr1:76019534-76019925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
42, 82
               

               
Conread position:
               
208-616
               

               
Cow position:
               
chr1:95057206-95056815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
163, 109
               

               
Conread position:
               
210-630
               

               
Cow position:
               
chr1:48581290-48580876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
22, 66
               

               
Conread position:
               
211-631
               

               
Cow position:
               
chr1:36875180-36874760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
180, 33
               

               
Conread position:
               
217-568
               

               
Cow position:
               
chr1:32001169-32001513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
184, 112
               

               
Conread position:
               
227-448
               

               
Cow position:
               
chr1:43547909-43548137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
89, 18
               

               
Conread position:
               
231-477
               

               
Cow position:
               
chr1:48769938-48769694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
228, 14
               

               
Conread position:
               
231-568
               

               
Cow position:
               
chr1:84016007-84015679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
165, 42
               

               
Conread position:
               
232-628
               

               
Cow position:
               
chr1:1165741-1165348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 168
               

               
Conread position:
               
233-640
               

               
Cow position:
               
chr1:31413844-31414223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 22
               

               
Conread position:
               
235-429
               

               
Cow position:
               
chr1:46765011-46764813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
237-544
               

               
Cow position:
               
chr1:101837174-101836875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
239, 158
               

               
Conread position:
               
237-618
               

               
Cow position:
               
chr1:25281525-25281918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
155, 278
               

               
Conread position:
               
237-622
               

               
Cow position:
               
chr1:51531885-51531527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
25, 100
               

               
Conread position:
               
239-423
               

               
Cow position:
               
chr1:84768749-84768934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
239-609
               

               
Cow position:
               
chr1:16961880-16962248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
233, 152
               

               
Conread position:
               
239-620
               

               
Cow position:
               
chr1:88618726-88618348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
159, 196
               

               
Conread position:
               
239-624
               

               
Cow position:
               
chr1:100706256-100705885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
265, 108
               

               
Conread position:
               
240-455
               

               
Cow position:
               
chr1:68676488-68676275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
242-560
               

               
Cow position:
               
chr1:75933393-75933088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 88
               

               
Conread position:
               
242-630
               

               
Cow position:
               
chr1:41252283-41252657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 93
               

               
Conread position:
               
242-630
               

               
Cow position:
               
chr1:84241007-84240646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
63, 43
               

               
Conread position:
               
243-630
               

               
Cow position:
               
chr1:8349198-8349565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 87
               

               
Conread position:
               
244-473
               

               
Cow position:
               
chr1:24406772-24406998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
244-624
               

               
Cow position:
               
chr1:47233353-47233723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
157, 253
               

               
Conread position:
               
245-468
               

               
Cow position:
               
chr1:73756127-73756345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
245-493
               

               
Cow position:
               
chr1:53458819-53458571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
150, 85
               

               
Conread position:
               
245-526
               

               
Cow position:
               
chr1:90975965-90976246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
227, 28
               

               
Conread position:
               
245-630
               

               
Cow position:
               
chr1:67821099-67821464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
71, 122
               

               
Conread position:
               
245-633
               

               
Cow position:
               
chr1:4032756-4032377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 231
               

               
Conread position:
               
246-445
               

               
Cow position:
               
chr1:98576169-98575969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
137, 12
               

               
Conread position:
               
246-489
               

               
Cow position:
               
chr1:23512538-23512776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
140, 10
               

               
Conread position:
               
246-497
               

               
Cow position:
               
chr1:41047180-41047429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
153, 28
               

               
Conread position:
               
246-607
               

               
Cow position:
               
chr1:40530980-40531340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
106, 246
               

               
Conread position:
               
246-629
               

               
Cow position:
               
chr1:51968583-51968217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
144, 63
               

               
Conread position:
               
246-630
               

               
Cow position:
               
chr1:16572499-16572878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
69, 86
               

               
Conread position:
               
246-636
               

               
Cow position:
               
chr1:80336126-80336510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
170, 143
               

               
Conread position:
               
247-424
               

               
Cow position:
               
chr1:71915998-71916174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
247-437
               

               
Cow position:
               
chr1:78067948-78068133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
247-445
               

               
Cow position:
               
chr1:6240161-6240355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
247-445
               

               
Cow position:
               
chr1:68672480-68672676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
152, 85
               

               
Conread position:
               
247-453
               

               
Cow position:
               
chr1:8347245-8347039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
247-456
               

               
Cow position:
               
chr1:58037140-58036931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
152, 76
               

               
Conread position:
               
247-468
               

               
Cow position:
               
chr1:59147223-59147437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
105, 61
               

               
Conread position:
               
247-471
               

               
Cow position:
               
chr1:95153344-95153117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
148, 109
               

               
Conread position:
               
247-475
               

               
Cow position:
               
chr1:5580177-5579948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
150, 29
               

               
Conread position:
               
247-477
               

               
Cow position:
               
chr1:81580299-81580066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
152, 76
               

               
Conread position:
               
247-478
               

               
Cow position:
               
chr1:78697650-78697878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
109, 120
               

               
Conread position:
               
247-479
               

               
Cow position:
               
chr1:7023243-7023010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
144, 174
               

               
Conread position:
               
247-479
               

               
Cow position:
               
chr1:30417926-30418148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
247-480
               

               
Cow position:
               
chr1:98512048-98511816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
221, 33
               

               
Conread position:
               
247-483
               

               
Cow position:
               
chr1:52052595-52052835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
247-493
               

               
Cow position:
               
chr1:97696866-97696615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
150, 83
               

               
Conread position:
               
247-493
               

               
Cow position:
               
chr1:100569278-100569026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
247-504
               

               
Cow position:
               
chr1:30047481-30047731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
148, 61
               

               
Conread position:
               
247-504
               

               
Cow position:
               
chr1:57420614-57420865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
227, 38
               

               
Conread position:
               
247-509
               

               
Cow position:
               
chr1:97939079-97938822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
234, 122
               

               
Conread position:
               
247-535
               

               
Cow position:
               
chr1:93554958-93554681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
229, 144
               

               
Conread position:
               
247-555
               

               
Cow position:
               
chr1:91874795-91875091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
152, 64
               

               
Conread position:
               
247-568
               

               
Cow position:
               
chr1:94261657-94261355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
222, 26
               

               
Conread position:
               
247-622
               

               
Cow position:
               
chr1:71253434-71253801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
143, 82
               

               
Conread position:
               
247-625
               

               
Cow position:
               
chr1:49839606-49839257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
354, 67
               

               
Conread position:
               
247-626
               

               
Cow position:
               
chr1:28177126-28176750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
227, 76
               

               
Conread position:
               
247-626
               

               
Cow position:
               
chr1:81613511-81613135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 169
               

               
Conread position:
               
247-626
               

               
Cow position:
               
chr1:100800473-100800107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
96, 15
               

               
Conread position:
               
247-627
               

               
Cow position:
               
chr1:74822573-74822200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
52, 86
               

               
Conread position:
               
247-630
               

               
Cow position:
               
chr1:68253717-68253337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
35, 176
               

               
Conread position:
               
247-630
               

               
Cow position:
               
chr1:69264930-69264568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 102
               

               
Conread position:
               
247-630
               

               
Cow position:
               
chr1:80988468-80988092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
149, 29
               

               
Conread position:
               
247-630
               

               
Cow position:
               
chr1:81913033-81913406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
143, 55
               

               
Conread position:
               
247-630
               

               
Cow position:
               
chr1:84255889-84255501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
126, 146
               

               
Conread position:
               
247-630
               

               
Cow position:
               
chr1:89741873-89742266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 166
               

               
Conread position:
               
247-633
               

               
Cow position:
               
chr1:53671628-53672006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
35, 26
               

               
Conread position:
               
247-634
               

               
Cow position:
               
chr1:52995148-52994766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 207
               

               
Conread position:
               
247-639
               

               
Cow position:
               
chr1:96712688-96713079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
113, 30
               

               
Conread position:
               
247-644
               

               
Cow position:
               
chr1:42360410-42359998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
52, 198
               

               
Conread position:
               
248-513
               

               
Cow position:
               
chr1:85549957-85550224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 0
               

               
Conread position:
               
248-535
               

               
Cow position:
               
chr1:2975873-2976167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
101, 127
               

               
Conread position:
               
248-585
               

               
Cow position:
               
chr1:71643541-71643873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
57, 8
               

               
Conread position:
               
248-630
               

               
Cow position:
               
chr1:84283192-84282807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
47, 8
               

               
Conread position:
               
248-659
               

               
Cow position:
               
chr1:44125517-44125920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
135, 82
               

               
Conread position:
               
249-390
               

               
Cow position:
               
chr1:38205594-38205453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
249-408
               

               
Cow position:
               
chr1:8670893-8670732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
249-425
               

               
Cow position:
               
chr1:21823482-21823312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
249-425
               

               
Cow position:
               
chr1:64218310-64218485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
141, 80
               

               
Conread position:
               
249-426
               

               
Cow position:
               
chr1:97962763-97962585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
23, 90
               

               
Conread position:
               
249-427
               

               
Cow position:
               
chr1:39121717-39121898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
136, 76
               

               
Conread position:
               
249-451
               

               
Cow position:
               
chr1:96192541-96192745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
66, 147
               

               
Conread position:
               
249-468
               

               
Cow position:
               
chr1:59132097-59132312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
206, 54
               

               
Conread position:
               
249-477
               

               
Cow position:
               
chr1:98413892-98413663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
141, 172
               

               
Conread position:
               
249-479
               

               
Cow position:
               
chr1:15902614-15902381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
124, 222
               

               
Conread position:
               
249-479
               

               
Cow position:
               
chr1:87937015-87936789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
249-490
               

               
Cow position:
               
chr1:44746979-44746743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
138, 28
               

               
Conread position:
               
249-493
               

               
Cow position:
               
chr1:72732160-72731913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
144, 24
               

               
Conread position:
               
249-508
               

               
Cow position:
               
chr1:541913-541661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
229, 44
               

               
Conread position:
               
249-535
               

               
Cow position:
               
chr1:75347744-75347458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
150, 47
               

               
Conread position:
               
249-554
               

               
Cow position:
               
chr1:50345665-50345364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
140, 50
               

               
Conread position:
               
249-558
               

               
Cow position:
               
chr1:24188343-24188050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
205, 112
               

               
Conread position:
               
249-567
               

               
Cow position:
               
chr1:69004510-69004201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
142, 24
               

               
Conread position:
               
249-568
               

               
Cow position:
               
chr1:3166956-3167265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
144, 80
               

               
Conread position:
               
249-568
               

               
Cow position:
               
chr1:89443359-89443669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
144, 50
               

               
Conread position:
               
249-600
               

               
Cow position:
               
chr1:15691451-15691113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
132, 31
               

               
Conread position:
               
249-602
               

               
Cow position:
               
chr1:88910781-88911116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
124, 149
               

               
Conread position:
               
249-605
               

               
Cow position:
               
chr1:64189620-64189273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
136, 54
               

               
Conread position:
               
249-605
               

               
Cow position:
               
chr1:98360284-98360638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
152, 61
               

               
Conread position:
               
249-609
               

               
Cow position:
               
chr1:20099485-20099133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 24
               

               
Conread position:
               
249-616
               

               
Cow position:
               
chr1:29916531-29916175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
94, 28
               

               
Conread position:
               
249-618
               

               
Cow position:
               
chr1:69415591-69415959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 37
               

               
Conread position:
               
249-626
               

               
Cow position:
               
chr1:31189994-31190354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
144, 28
               

               
Conread position:
               
249-630
               

               
Cow position:
               
chr1:31499745-31499373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 105
               

               
Conread position:
               
249-630
               

               
Cow position:
               
chr1:42555383-42555016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 12
               

               
Conread position:
               
249-630
               

               
Cow position:
               
chr1:63504452-63504085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 28
               

               
Conread position:
               
249-631
               

               
Cow position:
               
chr1:7657194-7657569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
149, 50
               

               
Conread position:
               
249-631
               

               
Cow position:
               
chr1:90422963-90423341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
143, 50
               

               
Conread position:
               
249-640
               

               
Cow position:
               
chr1:74946999-74947381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
141, 14
               

               
Conread position:
               
249-644
               

               
Cow position:
               
chr1:5161934-5162321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
24, 32
               

               
Conread position:
               
249-644
               

               
Cow position:
               
chr1:70533819-70534202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
136, 50
               

               
Conread position:
               
249-644
               

               
Cow position:
               
chr1:95764974-95765357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 28
               

               
Conread position:
               
249-647
               

               
Cow position:
               
chr1:82378910-82378523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
101, 28
               

               
Conread position:
               
249-650
               

               
Cow position:
               
chr1:80973489-80973889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
141, 28
               

               
Conread position:
               
250-459
               

               
Cow position:
               
chr1:71796193-71796404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
23, 70
               

               
Conread position:
               
250-467
               

               
Cow position:
               
chr1:6972645-6972431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
250-479
               

               
Cow position:
               
chr1:3352581-3352804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
250-479
               

               
Cow position:
               
chr1:26427742-26427972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 171
               

               
Conread position:
               
250-484
               

               
Cow position:
               
chr1:6826180-6826405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
226, 80
               

               
Conread position:
               
250-484
               

               
Cow position:
               
chr1:92989709-92989474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
250-493
               

               
Cow position:
               
chr1:65909629-65909401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
224, 14
               

               
Conread position:
               
250-493
               

               
Cow position:
               
chr1:85141616-85141857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
153, 80
               

               
Conread position:
               
250-493
               

               
Cow position:
               
chr1:86073715-86073469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
150, 169
               

               
Conread position:
               
250-532
               

               
Cow position:
               
chr1:75998349-75998627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
250, 49
               

               
Conread position:
               
250-560
               

               
Cow position:
               
chr1:86579081-86578764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
149, 80
               

               
Conread position:
               
250-564
               

               
Cow position:
               
chr1:20582062-20581759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
132, 49
               

               
Conread position:
               
250-568
               

               
Cow position:
               
chr1:9534280-9533982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 13
               

               
Conread position:
               
250-596
               

               
Cow position:
               
chr1:7971531-7971210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
103, 146
               

               
Conread position:
               
250-622
               

               
Cow position:
               
chr1:4291283-4290912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
92, 80
               

               
Conread position:
               
250-622
               

               
Cow position:
               
chr1:81319406-81319044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
109, 43
               

               
Conread position:
               
250-624
               

               
Cow position:
               
chr1:85029073-85028713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
65, 200
               

               
Conread position:
               
250-626
               

               
Cow position:
               
chr1:11913758-11914127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
17, 191
               

               
Conread position:
               
250-626
               

               
Cow position:
               
chr1:42138977-42138615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
148, 179
               

               
Conread position:
               
250-626
               

               
Cow position:
               
chr1:71136271-71135903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
140, 49
               

               
Conread position:
               
250-626
               

               
Cow position:
               
chr1:73196110-73196490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
40, 45
               

               
Conread position:
               
250-626
               

               
Cow position:
               
chr1:78791190-78791557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 41
               

               
Conread position:
               
250-626
               

               
Cow position:
               
chr1:94226436-94226798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 99
               

               
Conread position:
               
250-629
               

               
Cow position:
               
chr1:53308275-53308645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 39
               

               
Conread position:
               
250-630
               

               
Cow position:
               
chr1:26688354-26688732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 53
               

               
Conread position:
               
250-631
               

               
Cow position:
               
chr1:41735501-41735880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
133, 53
               

               
Conread position:
               
250-659
               

               
Cow position:
               
chr1:39068837-39069233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 163
               

               
Conread position:
               
251-380
               

               
Cow position:
               
chr1:64019403-64019532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
251-459
               

               
Cow position:
               
chr1:50992051-50991844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
164, 0
               

               
Conread position:
               
251-493
               

               
Cow position:
               
chr1:18780211-18780459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
97, 189
               

               
Conread position:
               
251-504
               

               
Cow position:
               
chr1:42545661-42545924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
251-564
               

               
Cow position:
               
chr1:19885498-19885196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
145, 5
               

               
Conread position:
               
251-574
               

               
Cow position:
               
chr1:58825659-58825350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
128, 80
               

               
Conread position:
               
251-625
               

               
Cow position:
               
chr1:94875557-94875927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
129, 37
               

               
Conread position:
               
251-626
               

               
Cow position:
               
chr1:10719362-10719736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
147, 53
               

               
Conread position:
               
251-630
               

               
Cow position:
               
chr1:36613142-36613529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
120, 256
               

               
Conread position:
               
251-630
               

               
Cow position:
               
chr1:45007586-45007212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
37, 26
               

               
Conread position:
               
251-631
               

               
Cow position:
               
chr1:48730714-48731083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 96
               

               
Conread position:
               
251-631
               

               
Cow position:
               
chr1:72141690-72141309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
136, 26
               

               
Conread position:
               
251-636
               

               
Cow position:
               
chr1:21460988-21460610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
48, 17
               

               
Conread position:
               
251-646
               

               
Cow position:
               
chr1:31390470-31390854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 253
               

               
Conread position:
               
252-479
               

               
Cow position:
               
chr1:80422389-80422170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
252-493
               

               
Cow position:
               
chr1:93810546-93810304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 136
               

               
Conread position:
               
252-496
               

               
Cow position:
               
chr1:101632220-101632467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
252-508
               

               
Cow position:
               
chr1:53425294-53425033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
252-508
               

               
Cow position:
               
chr1:77880617-77880877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
146, 79
               

               
Conread position:
               
252-626
               

               
Cow position:
               
chr1:36932271-36931909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 99
               

               
Conread position:
               
255-479
               

               
Cow position:
               
chr1:61542805-61543028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
255-551
               

               
Cow position:
               
chr1:67305128-67305419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
77, 18
               

               
Conread position:
               
255-605
               

               
Cow position:
               
chr1:70435111-70434764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
140, 9
               

               
Conread position:
               
255-620
               

               
Cow position:
               
chr1:30504615-30504227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
173, 370
               

               
Conread position:
               
255-626
               

               
Cow position:
               
chr1:37706863-37707219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
140, 74
               

               
Conread position:
               
255-626
               

               
Cow position:
               
chr1:43822513-43822127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 71
               

               
Conread position:
               
255-629
               

               
Cow position:
               
chr1:95215076-95215439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 135
               

               
Conread position:
               
255-630
               

               
Cow position:
               
chr1:53495575-53495208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
35, 57
               

               
Conread position:
               
255-630
               

               
Cow position:
               
chr1:72285954-72286303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 136
               

               
Conread position:
               
255-650
               

               
Cow position:
               
chr1:37309405-37309774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 135
               

               
Conread position:
               
256-389
               

               
Cow position:
               
chr1:13576767-13576906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
256-568
               

               
Cow position:
               
chr1:1499580-1499893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
214, 150
               

               
Conread position:
               
256-629
               

               
Cow position:
               
chr1:66430404-66430048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
213, 87
               

               
Conread position:
               
256-631
               

               
Cow position:
               
chr1:80764423-80764790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 48
               

               
Conread position:
               
256-634
               

               
Cow position:
               
chr1:6794813-6795194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
137, 49
               

               
Conread position:
               
256-637
               

               
Cow position:
               
chr1:34300438-34300809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
220, 134
               

               
Conread position:
               
257-631
               

               
Cow position:
               
chr1:21836043-21835693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 73
               

               
Conread position:
               
258-463
               

               
Cow position:
               
chr1:45670743-45670544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
258-489
               

               
Cow position:
               
chr1:85647671-85647903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
136, 16
               

               
Conread position:
               
258-493
               

               
Cow position:
               
chr1:12978793-12978555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
258-596
               

               
Cow position:
               
chr1:98461397-98461070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
108, 118
               

               
Conread position:
               
259-493
               

               
Cow position:
               
chr1:26615964-26616196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
95, 132
               

               
Conread position:
               
259-493
               

               
Cow position:
               
chr1:77683462-77683232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
215, 129
               

               
Conread position:
               
259-493
               

               
Cow position:
               
chr1:89350075-89349837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
259-626
               

               
Cow position:
               
chr1:22827273-22826919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
9, 159
               

               
Conread position:
               
259-630
               

               
Cow position:
               
chr1:88652746-88652377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
89, 64
               

               
Conread position:
               
259-633
               

               
Cow position:
               
chr1:46218683-46218326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
126, 78
               

               
Conread position:
               
259-633
               

               
Cow position:
               
chr1:70380033-70380403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 15
               

               
Conread position:
               
259-647
               

               
Cow position:
               
chr1:26702097-26702478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 69
               

               
Conread position:
               
259-652
               

               
Cow position:
               
chr1:83748052-83747667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
131, 65
               

               
Conread position:
               
259-658
               

               
Cow position:
               
chr1:2765523-2765137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
131, 40
               

               
Conread position:
               
261-475
               

               
Cow position:
               
chr1:19226949-19227161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
144, 158
               

               
Conread position:
               
261-633
               

               
Cow position:
               
chr1:81355595-81355960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 205
               

               
Conread position:
               
263-604
               

               
Cow position:
               
chr1:26729821-26729499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
11, 56
               

               
Conread position:
               
263-610
               

               
Cow position:
               
chr1:73761244-73761586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
39, 115
               

               
Conread position:
               
263-630
               

               
Cow position:
               
chr1:90868336-90868690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 11
               

               
Conread position:
               
264-475
               

               
Cow position:
               
chr1:65028639-65028423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
264-479
               

               
Cow position:
               
chr1:89485685-89485465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
264-566
               

               
Cow position:
               
chr1:4414104-4414398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
48, 67
               

               
Conread position:
               
264-626
               

               
Cow position:
               
chr1:49796096-49795750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
273, 5
               

               
Conread position:
               
264-630
               

               
Cow position:
               
chr1:20205134-20204771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
11, 68
               

               
Conread position:
               
264-630
               

               
Cow position:
               
chr1:45288766-45289127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 227
               

               
Conread position:
               
265-620
               

               
Cow position:
               
chr1:56635202-56634852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 107
               

               
Conread position:
               
265-626
               

               
Cow position:
               
chr1:57637461-57637122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
268-599
               

               
Cow position:
               
chr1:26943409-26943088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
132, 183
               

               
Conread position:
               
268-646
               

               
Cow position:
               
chr1:81868628-81868997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
209, 128
               

               
Conread position:
               
269-588
               

               
Cow position:
               
chr1:40482313-40482624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
203, 17
               

               
Conread position:
               
270-626
               

               
Cow position:
               
chr1:92370270-92370609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
269, 120
               

               
Conread position:
               
270-630
               

               
Cow position:
               
chr1:52753061-52753420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
120, 164
               

               
Conread position:
               
272-558
               

               
Cow position:
               
chr1:95179051-95178768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
238, 209
               

               
Conread position:
               
272-625
               

               
Cow position:
               
chr1:55146895-55146552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 36
               

               
Conread position:
               
272-626
               

               
Cow position:
               
chr1:51981319-51980977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
117, 135
               

               
Conread position:
               
272-630
               

               
Cow position:
               
chr1:61176275-61175929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
267, 100
               

               
Conread position:
               
272-636
               

               
Cow position:
               
chr1:90641125-90640765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 43
               

               
Conread position:
               
272-645
               

               
Cow position:
               
chr1:57677485-57677854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
127, 24
               

               
Conread position:
               
273-477
               

               
Cow position:
               
chr1:648421-648216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
117, 135
               

               
Conread position:
               
273-568
               

               
Cow position:
               
chr1:85867685-85867401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
267, 117
               

               
Conread position:
               
273-603
               

               
Cow position:
               
chr1:7186884-7186560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
204, 97
               

               
Conread position:
               
273-607
               

               
Cow position:
               
chr1:21508489-21508156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
123, 182
               

               
Conread position:
               
273-624
               

               
Cow position:
               
chr1:1185825-1185491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
226, 116
               

               
Conread position:
               
273-630
               

               
Cow position:
               
chr1:71691916-71691560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
120, 31
               

               
Conread position:
               
273-630
               

               
Cow position:
               
chr1:73584314-73584656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
117, 63
               

               
Conread position:
               
273-630
               

               
Cow position:
               
chr1:91816675-91817028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
117, 138
               

               
Conread position:
               
273-630
               

               
Cow position:
               
chr1:96478796-96478440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
101, 231
               

               
Conread position:
               
273-633
               

               
Cow position:
               
chr1:31765277-31765652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
49, 233
               

               
Conread position:
               
273-633
               

               
Cow position:
               
chr1:70297374-70297009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
117, 224
               

               
Conread position:
               
277-629
               

               
Cow position:
               
chr1:55135927-55135582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
61, 12
               

               
Conread position:
               
279-626
               

               
Cow position:
               
chr1:44165177-44164829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 39
               

               
Conread position:
               
280-490
               

               
Cow position:
               
chr1:43703498-43703285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
280-493
               

               
Cow position:
               
chr1:101946625-101946835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
197, 115
               

               
Conread position:
               
280-535
               

               
Cow position:
               
chr1:75142086-75141840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
120, 114
               

               
Conread position:
               
280-567
               

               
Cow position:
               
chr1:42174499-42174780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
9, 20
               

               
Conread position:
               
280-574
               

               
Cow position:
               
chr1:70026256-70026539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 115
               

               
Conread position:
               
280-626
               

               
Cow position:
               
chr1:101634801-101634451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
116, 87
               

               
Conread position:
               
280-630
               

               
Cow position:
               
chr1:98551809-98551463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
115, 224
               

               
Conread position:
               
280-636
               

               
Cow position:
               
chr1:94212316-94211974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
40, 115
               

               
Conread position:
               
280-637
               

               
Cow position:
               
chr1:85597027-85596685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
116, 64
               

               
Conread position:
               
280-658
               

               
Cow position:
               
chr1:69540371-69540003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
196, 42
               

               
Conread position:
               
281-624
               

               
Cow position:
               
chr1:68951713-68951384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 27
               

               
Conread position:
               
281-634
               

               
Cow position:
               
chr1:86325517-86325869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
8, 30
               

               
Conread position:
               
283-455
               

               
Cow position:
               
chr1:72684778-72684610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
107, 20
               

               
Conread position:
               
283-490
               

               
Cow position:
               
chr1:5023676-5023878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
111, 156
               

               
Conread position:
               
283-568
               

               
Cow position:
               
chr1:6788197-6788482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
107, 220
               

               
Conread position:
               
283-625
               

               
Cow position:
               
chr1:92963481-92963149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
117, 106
               

               
Conread position:
               
284-594
               

               
Cow position:
               
chr1:98311157-98310841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
32, 211
               

               
Conread position:
               
284-624
               

               
Cow position:
               
chr1:101551548-101551209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
99, 50
               

               
Conread position:
               
285-608
               

               
Cow position:
               
chr1:83582849-83583170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
110, 147
               

               
Conread position:
               
285-617
               

               
Cow position:
               
chr1:31234851-31235175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
25, 33
               

               
Conread position:
               
285-627
               

               
Cow position:
               
chr1:81563829-81563482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
87, 223
               

               
Conread position:
               
285-630
               

               
Cow position:
               
chr1:40600129-40599798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
124, 213
               

               
Conread position:
               
286-459
               

               
Cow position:
               
chr1:55088972-55089143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
104, 51
               

               
Conread position:
               
286-492
               

               
Cow position:
               
chr1:92434083-92433876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
113, 84
               

               
Conread position:
               
286-629
               

               
Cow position:
               
chr1:57305903-57305579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
14, 74
               

               
Conread position:
               
286-630
               

               
Cow position:
               
chr1:6939553-6939893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
93, 13
               

               
Conread position:
               
286-631
               

               
Cow position:
               
chr1:7350631-7350283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
108, 133
               

               
Conread position:
               
286-640
               

               
Cow position:
               
chr1:29975517-29975859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
96, 13
               

               
Conread position:
               
287-628
               

               
Cow position:
               
chr1:71938427-71938763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
82, 16
               

               
Conread position:
               
288-469
               

               
Cow position:
               
chr1:55819132-55818961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
288-636
               

               
Cow position:
               
chr1:4374256-4374598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 130
               

               
Conread position:
               
293-630
               

               
Cow position:
               
chr1:44769033-44769365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
102, 69
               

               
Conread position:
               
293-630
               

               
Cow position:
               
chr1:80900196-80899854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
80, 117
               

               
Conread position:
               
296-528
               

               
Cow position:
               
chr1:9470325-9470553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
180, 189
               

               
Conread position:
               
296-568
               

               
Cow position:
               
chr1:51654497-51654218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
87, 213
               

               
Conread position:
               
296-630
               

               
Cow position:
               
chr1:79591171-79590846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
176, 94
               

               
Conread position:
               
296-631
               

               
Cow position:
               
chr1:102647200-102647524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
146, 100
               

               
Conread position:
               
296-653
               

               
Cow position:
               
chr1:79278374-79278718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 30
               

               
Conread position:
               
297-630
               

               
Cow position:
               
chr1:82884320-82884639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
16, 98
               

               
Conread position:
               
297-646
               

               
Cow position:
               
chr1:29379620-29379945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
242, 80
               

               
Conread position:
               
298-493
               

               
Cow position:
               
chr1:50045872-50045674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
105, 40
               

               
Conread position:
               
298-616
               

               
Cow position:
               
chr1:28284647-28284334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
87, 163
               

               
Conread position:
               
298-652
               

               
Cow position:
               
chr1:21934102-21934449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
89, 182
               

               
Conread position:
               
298-652
               

               
Cow position:
               
chr1:75443360-75443695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
176, 22
               

               
Conread position:
               
299-568
               

               
Cow position:
               
chr1:95654643-95654908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
101, 144
               

               
Conread position:
               
299-571
               

               
Cow position:
               
chr1:69127096-69127363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
97, 112
               

               
Conread position:
               
299-624
               

               
Cow position:
               
chr1:102519726-102519420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
73, 81
               

               
Conread position:
               
299-630
               

               
Cow position:
               
chr1:90864223-90864554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
172, 212
               

               
Conread position:
               
301-478
               

               
Cow position:
               
chr1:45285731-45285550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
102, 147
               

               
Conread position:
               
303-626
               

               
Cow position:
               
chr1:1991352-1991678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 54
               

               
Conread position:
               
303-630
               

               
Cow position:
               
chr1:63595988-63596314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
87, 130
               

               
Conread position:
               
303-636
               

               
Cow position:
               
chr1:60707469-60707143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
105, 35
               

               
Conread position:
               
304-535
               

               
Cow position:
               
chr1:20544364-20544133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
11, 36
               

               
Conread position:
               
304-626
               

               
Cow position:
               
chr1:85361916-85361605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
90, 55
               

               
Conread position:
               
308-618
               

               
Cow position:
               
chr1:83083069-83082760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
106, 82
               

               
Conread position:
               
309-489
               

               
Cow position:
               
chr1:93228585-93228405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
165, 85
               

               
Conread position:
               
310-616
               

               
Cow position:
               
chr1:54162745-54163050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
77, 69
               

               
Conread position:
               
311-493
               

               
Cow position:
               
chr1:101715024-101715212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
311-544
               

               
Cow position:
               
chr1:8984624-8984861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 110
               

               
Conread position:
               
311-545
               

               
Cow position:
               
chr1:19568908-19568679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
85, 27
               

               
Conread position:
               
311-558
               

               
Cow position:
               
chr1:24445570-24445811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
95, 27
               

               
Conread position:
               
311-568
               

               
Cow position:
               
chr1:72103908-72103654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
91, 79
               

               
Conread position:
               
311-620
               

               
Cow position:
               
chr1:10655539-10655233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
166, 10
               

               
Conread position:
               
311-624
               

               
Cow position:
               
chr1:57395878-57396177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
279, 89
               

               
Conread position:
               
311-624
               

               
Cow position:
               
chr1:61723961-61724273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
14, 5
               

               
Conread position:
               
311-630
               

               
Cow position:
               
chr1:24235461-24235772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
165, 102
               

               
Conread position:
               
311-630
               

               
Cow position:
               
chr1:39912943-39913278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 84
               

               
Conread position:
               
311-631
               

               
Cow position:
               
chr1:57639457-57639775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
74, 177
               

               
Conread position:
               
311-634
               

               
Cow position:
               
chr1:54199321-54199638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 190
               

               
Conread position:
               
311-636
               

               
Cow position:
               
chr1:60907435-60907101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
78, 192
               

               
Conread position:
               
311-636
               

               
Cow position:
               
chr1:79333663-79333986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
46, 101
               

               
Conread position:
               
311-638
               

               
Cow position:
               
chr1:635252-634931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
78, 95
               

               
Conread position:
               
311-646
               

               
Cow position:
               
chr1:53039643-53039967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
59, 88
               

               
Conread position:
               
312-567
               

               
Cow position:
               
chr1:98372689-98372437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
162, 83
               

               
Conread position:
               
314-490
               

               
Cow position:
               
chr1:100770697-100770872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
26, 80
               

               
Conread position:
               
314-493
               

               
Cow position:
               
chr1:182859-182681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
89, 54
               

               
Conread position:
               
314-568
               

               
Cow position:
               
chr1:82443400-82443649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
85, 12
               

               
Conread position:
               
314-636
               

               
Cow position:
               
chr1:74940255-74939937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
8, 20
               

               
Conread position:
               
314-636
               

               
Cow position:
               
chr1:89185113-89185449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
46, 191
               

               
Conread position:
               
314-646
               

               
Cow position:
               
chr1:39101115-39100785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
94, 80
               

               
Conread position:
               
316-574
               

               
Cow position:
               
chr1:70028633-70028381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 78
               

               
Conread position:
               
316-644
               

               
Cow position:
               
chr1:45535760-45535434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 178
               

               
Conread position:
               
317-630
               

               
Cow position:
               
chr1:20806376-20806064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
55, 189
               

               
Conread position:
               
319-490
               

               
Cow position:
               
chr1:7609670-7609493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
319-629
               

               
Cow position:
               
chr1:8869609-8869918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
50, 140
               

               
Conread position:
               
321-630
               

               
Cow position:
               
chr1:68217313-68217614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
69, 130
               

               
Conread position:
               
323-528
               

               
Cow position:
               
chr1:15169287-15169489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
153, 72
               

               
Conread position:
               
324-607
               

               
Cow position:
               
chr1:43447784-43448055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
73, 18
               

               
Conread position:
               
326-630
               

               
Cow position:
               
chr1:73522104-73522394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
61, 128
               

               
Conread position:
               
328-504
               

               
Cow position:
               
chr1:38544423-38544598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
72, 60
               

               
Conread position:
               
330-633
               

               
Cow position:
               
chr1:30034572-30034289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
151, 66
               

               
Conread position:
               
332-488
               

               
Cow position:
               
chr1:22394840-22394674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
332-492
               

               
Cow position:
               
chr1:89785947-89785786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
146, 64
               

               
Conread position:
               
332-565
               

               
Cow position:
               
chr1:68245269-68245519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
55, 17
               

               
Conread position:
               
332-597
               

               
Cow position:
               
chr1:52956295-52956038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
332-625
               

               
Cow position:
               
chr1:73561610-73561898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
62, 97
               

               
Conread position:
               
332-626
               

               
Cow position:
               
chr1:66751957-66752249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
145, 164
               

               
Conread position:
               
332-628
               

               
Cow position:
               
chr1:43839566-43839275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
64, 164
               

               
Conread position:
               
332-630
               

               
Cow position:
               
chr1:22448544-22448838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
65, 182
               

               
Conread position:
               
332-630
               

               
Cow position:
               
chr1:40249217-40248921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
148, 43
               

               
Conread position:
               
332-630
               

               
Cow position:
               
chr1:56719339-56719059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
207, 59
               

               
Conread position:
               
332-637
               

               
Cow position:
               
chr1:57524780-57525077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
68, 59
               

               
Conread position:
               
332-638
               

               
Cow position:
               
chr1:57618046-57617749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 62
               

               
Conread position:
               
333-505
               

               
Cow position:
               
chr1:6228548-6228723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
69, 61
               

               
Conread position:
               
333-620
               

               
Cow position:
               
chr1:3034963-3035237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
144, 60
               

               
Conread position:
               
333-626
               

               
Cow position:
               
chr1:68276452-68276157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
57, 169
               

               
Conread position:
               
333-630
               

               
Cow position:
               
chr1:47009069-47008773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
39, 77
               

               
Conread position:
               
333-646
               

               
Cow position:
               
chr1:4680160-4679863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
48, 38
               

               
Conread position:
               
334-644
               

               
Cow position:
               
chr1:57263957-57264254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 166
               

               
Conread position:
               
334-644
               

               
Cow position:
               
chr1:57635497-57635199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 163
               

               
Conread position:
               
334-652
               

               
Cow position:
               
chr1:3137961-3137656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
136, 50
               

               
Conread position:
               
335-479
               

               
Cow position:
               
chr1:71716544-71716400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
60, 9
               

               
Conread position:
               
335-644
               

               
Cow position:
               
chr1:32244361-32244667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
55, 167
               

               
Conread position:
               
335-658
               

               
Cow position:
               
chr1:64251011-64251332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
23, 107
               

               
Conread position:
               
337-629
               

               
Cow position:
               
chr1:99095394-99095110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
60, 10
               

               
Conread position:
               
337-630
               

               
Cow position:
               
chr1:82505008-82504713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
93, 162
               

               
Conread position:
               
337-637
               

               
Cow position:
               
chr1:1802171-1801883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
60, 12
               

               
Conread position:
               
338-540
               

               
Cow position:
               
chr1:51684838-51684636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
57, 165
               

               
Conread position:
               
338-550
               

               
Cow position:
               
chr1:80631729-80631524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
133, 79
               

               
Conread position:
               
338-560
               

               
Cow position:
               
chr1:3243967-3243754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
140, 56
               

               
Conread position:
               
338-568
               

               
Cow position:
               
chr1:81471164-81470936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
62, 35
               

               
Conread position:
               
338-604
               

               
Cow position:
               
chr1:100512640-100512367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
52, 171
               

               
Conread position:
               
338-626
               

               
Cow position:
               
chr1:20422178-20422457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
95, 36
               

               
Conread position:
               
338-634
               

               
Cow position:
               
chr1:53207674-53207953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
339-609
               

               
Cow position:
               
chr1:53540421-53540157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
62, 40
               

               
Conread position:
               
340-490
               

               
Cow position:
               
chr1:6961937-6961785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
90, 63
               

               
Conread position:
               
340-568
               

               
Cow position:
               
chr1:64421360-64421138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
50, 106
               

               
Conread position:
               
340-588
               

               
Cow position:
               
chr1:68996209-68995959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
142, 65
               

               
Conread position:
               
340-623
               

               
Cow position:
               
chr1:3244881-3244603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
13, 91
               

               
Conread position:
               
340-644
               

               
Cow position:
               
chr1:11770263-11770564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
132, 76
               

               
Conread position:
               
341-566
               

               
Cow position:
               
chr1:91039144-91039367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 104
               

               
Conread position:
               
341-626
               

               
Cow position:
               
chr1:1403453-1403720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
341-626
               

               
Cow position:
               
chr1:80870143-80869856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
342-493
               

               
Cow position:
               
chr1:22255397-22255247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
91, 42
               

               
Conread position:
               
342-588
               

               
Cow position:
               
chr1:98557758-98557996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
197, 7
               

               
Conread position:
               
343-617
               

               
Cow position:
               
chr1:51818969-51818700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
5, 162
               

               
Conread position:
               
343-630
               

               
Cow position:
               
chr1:79663647-79663920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
192, 47
               

               
Conread position:
               
344-607
               

               
Cow position:
               
chr1:101812249-101812506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
44, 76
               

               
Conread position:
               
345-607
               

               
Cow position:
               
chr1:51770111-51769854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
135, 53
               

               
Conread position:
               
345-630
               

               
Cow position:
               
chr1:5872943-5873225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
57, 156
               

               
Conread position:
               
345-636
               

               
Cow position:
               
chr1:78783572-78783286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
54, 72
               

               
Conread position:
               
345-644
               

               
Cow position:
               
chr1:56748625-56748322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
346-568
               

               
Cow position:
               
chr1:47883794-47884025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
94, 169
               

               
Conread position:
               
346-568
               

               
Cow position:
               
chr1:83593785-83594000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
126, 44
               

               
Conread position:
               
346-630
               

               
Cow position:
               
chr1:666389-666106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
48, 149
               

               
Conread position:
               
346-643
               

               
Cow position:
               
chr1:63905451-63905741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
130, 51
               

               
Conread position:
               
346-646
               

               
Cow position:
               
chr1:71818439-71818727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
130, 10
               

               
Conread position:
               
347-479
               

               
Cow position:
               
chr1:80942570-80942437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
347-535
               

               
Cow position:
               
chr1:81638427-81638240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
43, 92
               

               
Conread position:
               
347-622
               

               
Cow position:
               
chr1:58419958-58419686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
133, 49
               

               
Conread position:
               
347-624
               

               
Cow position:
               
chr1:31341031-31341302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
133, 44
               

               
Conread position:
               
347-626
               

               
Cow position:
               
chr1:28567415-28567688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
152, 30
               

               
Conread position:
               
347-630
               

               
Cow position:
               
chr1:61725092-61725367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
189, 68
               

               
Conread position:
               
347-631
               

               
Cow position:
               
chr1:68782614-68782901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
56, 160
               

               
Conread position:
               
347-636
               

               
Cow position:
               
chr1:33811952-33811674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
50, 68
               

               
Conread position:
               
347-646
               

               
Cow position:
               
chr1:78794714-78795005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
38, 101
               

               
Conread position:
               
348-624
               

               
Cow position:
               
chr1:15311884-15311620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
126, 25
               

               
Conread position:
               
349-568
               

               
Cow position:
               
chr1:56674106-56674322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
58, 102
               

               
Conread position:
               
349-628
               

               
Cow position:
               
chr1:91142136-91142406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
131, 67
               

               
Conread position:
               
349-634
               

               
Cow position:
               
chr1:24655978-24655702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
123, 45
               

               
Conread position:
               
349-644
               

               
Cow position:
               
chr1:56643566-56643864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
30, 54
               

               
Conread position:
               
350-528
               

               
Cow position:
               
chr1:85826366-85826191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
37, 150
               

               
Conread position:
               
350-569
               

               
Cow position:
               
chr1:17291622-17291836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
52, 29
               

               
Conread position:
               
350-602
               

               
Cow position:
               
chr1:78154704-78154951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
350-617
               

               
Cow position:
               
chr1:64962648-64962896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
44, 70
               

               
Conread position:
               
350-630
               

               
Cow position:
               
chr1:71946351-71946624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 156
               

               
Conread position:
               
351-626
               

               
Cow position:
               
chr1:3776601-3776864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
145, 26
               

               
Conread position:
               
351-651
               

               
Cow position:
               
chr1:3340956-3340661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
50, 93
               

               
Conread position:
               
352-654
               

               
Cow position:
               
chr1:16972821-16973120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
15, 108
               

               
Conread position:
               
354-630
               

               
Cow position:
               
chr1:34000926-34000651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
164, 52
               

               
Conread position:
               
356-629
               

               
Cow position:
               
chr1:11873348-11873608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
42, 72
               

               
Conread position:
               
356-630
               

               
Cow position:
               
chr1:6322220-6321955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
32, 97
               

               
Conread position:
               
357-568
               

               
Cow position:
               
chr1:21500448-21500643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
23, 14
               

               
Conread position:
               
357-605
               

               
Cow position:
               
chr1:51836586-51836342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
31, 144
               

               
Conread position:
               
357-624
               

               
Cow position:
               
chr1:75967443-75967188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
120, 139
               

               
Conread position:
               
357-626
               

               
Cow position:
               
chr1:57900729-57900991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
120, 22
               

               
Conread position:
               
357-638
               

               
Cow position:
               
chr1:12595889-12596163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
15, 142
               

               
Conread position:
               
359-626
               

               
Cow position:
               
chr1:19998032-19998285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
180, 49
               

               
Conread position:
               
360-625
               

               
Cow position:
               
chr1:8532204-8532462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
42, 34
               

               
Conread position:
               
366-493
               

               
Cow position:
               
chr1:98396957-98397084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
111, 30
               

               
Conread position:
               
366-631
               

               
Cow position:
               
chr1:50634402-50634661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
89, 9
               

               
Conread position:
               
372-607
               

               
Cow position:
               
chr1:53410919-53411141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
377-626
               

               
Cow position:
               
chr1:78689924-78689683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
80, 17
               

               
Conread position:
               
378-644
               

               
Cow position:
               
chr1:79295326-79295060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
25, 16
               

               
Conread position:
               
379-652
               

               
Cow position:
               
chr1:84116386-84116126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
95, 48
               

               
Conread position:
               
380-630
               

               
Cow position:
               
chr1:87888389-87888147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
91, 115
               

               
Conread position:
               
381-594
               

               
Cow position:
               
chr1:64938955-64939161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
74, 9
               

               
Conread position:
               
381-626
               

               
Cow position:
               
chr1:46939870-46940112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
20, 66
               

               
Conread position:
               
382-600
               

               
Cow position:
               
chr1:5062017-5061797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
9, 118
               

               
Conread position:
               
385-629
               

               
Cow position:
               
chr1:14379550-14379783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
20, 112
               

               
Conread position:
               
385-658
               

               
Cow position:
               
chr1:49131133-49131404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
70, 13
               

               
Conread position:
               
386-625
               

               
Cow position:
               
chr1:14528213-14528449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
62, 110
               

               
Conread position:
               
386-626
               

               
Cow position:
               
chr1:69940983-69941218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
21, 116
               

               
Conread position:
               
386-634
               

               
Cow position:
               
chr1:77658050-77657808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
78, 68
               

               
Conread position:
               
388-604
               

               
Cow position:
               
chr1:81277220-81277430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
10, 112
               

               
Conread position:
               
388-625
               

               
Cow position:
               
chr1:102468984-102469214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
13, 44
               

               
Conread position:
               
391-624
               

               
Cow position:
               
chr1:68282781-68282546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
20, 107
               

               
Conread position:
               
391-650
               

               
Cow position:
               
chr1:81179995-81180254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
36, 8
               

               
Conread position:
               
392-619
               

               
Cow position:
               
chr1:20002259-20002479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
6, 109
               

               
Conread position:
               
394-626
               

               
Cow position:
               
chr1:95327176-95327403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
82, 52
               

               
Conread position:
               
394-653
               

               
Cow position:
               
chr1:97619862-97620116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
82, 102
               

               
Conread position:
               
395-629
               

               
Cow position:
               
chr1:41004389-41004620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
81, 101
               

               
Conread position:
               
396-569
               

               
Cow position:
               
chr1:102113132-102113302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
81, 100
               

               
Conread position:
               
396-616
               

               
Cow position:
               
chr1:25886105-25886314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
143, 60
               

               
Conread position:
               
396-626
               

               
Cow position:
               
chr1:3456841-3456622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
81, 35
               

               
Conread position:
               
396-626
               

               
Cow position:
               
chr1:99136459-99136680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
81, 13
               

               
Conread position:
               
396-632
               

               
Cow position:
               
chr1:70282908-70282679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
59, 10
               

               
Conread position:
               
397-633
               

               
Cow position:
               
chr1:61564768-61564534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
80, 99
               

               
Conread position:
               
398-547
               

               
Cow position:
               
chr1:59020248-59020097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
398-595
               

               
Cow position:
               
chr1:45673680-45673492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
398-602
               

               
Cow position:
               
chr1:20288089-20287888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
81, 94
               

               
Conread position:
               
399-626
               

               
Cow position:
               
chr1:98708410-98708192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
77, 97
               

               
Conread position:
               
399-651
               

               
Cow position:
               
chr1:51628529-51628778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
140, 96
               

               
Conread position:
               
400-626
               

               
Cow position:
               
chr1:23633942-23634150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
401-562
               

               
Cow position:
               
chr1:89083078-89082921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
76, 91
               

               
Conread position:
               
402-619
               

               
Cow position:
               
chr1:20799852-20799629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
59, 115
               

               
Conread position:
               
402-626
               

               
Cow position:
               
chr1:56711652-56711868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
72, 98
               

               
Conread position:
               
403-626
               

               
Cow position:
               
chr1:89395567-89395341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
111, 98
               

               
Conread position:
               
406-634
               

               
Cow position:
               
chr1:42968352-42968576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
133, 89
               

               
Conread position:
               
409-636
               

               
Cow position:
               
chr1:82861741-82861513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
68, 90
               

               
Conread position:
               
411-626
               

               
Cow position:
               
chr1:88338646-88338447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
128, 35
               

               
Conread position:
               
412-630
               

               
Cow position:
               
chr1:4027149-4026931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
59, 93
               

               
Conread position:
               
413-604
               

               
Cow position:
               
chr1:19545143-19545328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
64, 87
               

               
Conread position:
               
414-625
               

               
Cow position:
               
chr1:44136511-44136711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
67, 85
               

               
Conread position:
               
418-626
               

               
Cow position:
               
chr1:43893875-43893678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
159, 15
               

               
Conread position:
               
420-630
               

               
Cow position:
               
chr1:64160289-64160087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
52, 79
               

               
Conread position:
               
429-630
               

               
Cow position:
               
chr1:55686277-55686473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
48, 71
               

               
Conread position:
               
432-625
               

               
Cow position:
               
chr1:74013322-74013516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 70
               

               
Conread position:
               
432-630
               

               
Cow position:
               
chr1:33717165-33716967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
40, 67
               

               
Conread position:
               
432-634
               

               
Cow position:
               
chr1:32631404-32631208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
42, 66
               

               
Conread position:
               
435-637
               

               
Cow position:
               
chr1:23905932-23905733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
104, 55
               

               
Conread position:
               
438-630
               

               
Cow position:
               
chr1:13614782-13614973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
41, 61
               

               
Conread position:
               
443-631
               

               
Cow position:
               
chr1:96192937-96193129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
33, 24
               
Show alignments to all cow chromosomes.