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Cow genome map

           
Conread name:
           
Ova1-OVRM10096F06
        

               
Conread position:
               
125-624
               

               
Cow position:
               
chr21:32559073-32559545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
91, 46
               

               
Conread position:
               
126-605
               

               
Cow position:
               
chr21:13365639-13365172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 17
               

               
Conread position:
               
127-479
               

               
Cow position:
               
chr21:47363432-47363791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 16
               

               
Conread position:
               
127-505
               

               
Cow position:
               
chr21:9939907-9940275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
128-428
               

               
Cow position:
               
chr21:8430800-8431104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
103, 33
               

               
Conread position:
               
130-626
               

               
Cow position:
               
chr21:641881-641391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 40
               

               
Conread position:
               
130-631
               

               
Cow position:
               
chr21:4281583-4282066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 104
               

               
Conread position:
               
134-493
               

               
Cow position:
               
chr21:40266415-40266053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 14
               

               
Conread position:
               
146-371
               

               
Cow position:
               
chr21:26735677-26735465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
153-630
               

               
Cow position:
               
chr21:33791121-33791565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
157-626
               

               
Cow position:
               
chr21:31253800-31253342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 24
               

               
Conread position:
               
158-528
               

               
Cow position:
               
chr21:37789734-37790100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
244, 14
               

               
Conread position:
               
158-588
               

               
Cow position:
               
chr21:32297239-32297666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
74, 12
               

               
Conread position:
               
158-622
               

               
Cow position:
               
chr21:22352986-22353419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
241, 68
               

               
Conread position:
               
158-631
               

               
Cow position:
               
chr21:30848678-30849137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 74
               

               
Conread position:
               
158-658
               

               
Cow position:
               
chr21:23587142-23586652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 72
               

               
Conread position:
               
159-379
               

               
Cow position:
               
chr21:30145365-30145580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
71, 11
               

               
Conread position:
               
159-427
               

               
Cow position:
               
chr21:46599627-46599358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
213, 108
               

               
Conread position:
               
159-429
               

               
Cow position:
               
chr21:13589029-13588759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
72, 10
               

               
Conread position:
               
159-435
               

               
Cow position:
               
chr21:7768693-7768425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
231, 11
               

               
Conread position:
               
159-479
               

               
Cow position:
               
chr21:5465017-5464694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 112
               

               
Conread position:
               
159-493
               

               
Cow position:
               
chr21:45906354-45906689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
91, 10
               

               
Conread position:
               
159-535
               

               
Cow position:
               
chr21:23979912-23980287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
73, 10
               

               
Conread position:
               
159-565
               

               
Cow position:
               
chr21:15584157-15584546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 15
               

               
Conread position:
               
159-588
               

               
Cow position:
               
chr21:41590297-41590712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
273, 220
               

               
Conread position:
               
159-598
               

               
Cow position:
               
chr21:18064658-18065089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
29, 11
               

               
Conread position:
               
159-607
               

               
Cow position:
               
chr21:4723731-4723305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
219, 72
               

               
Conread position:
               
159-607
               

               
Cow position:
               
chr21:44825606-44826053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
80, 59
               

               
Conread position:
               
159-622
               

               
Cow position:
               
chr21:14452502-14452041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 44
               

               
Conread position:
               
159-626
               

               
Cow position:
               
chr21:34010128-34010583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 11
               

               
Conread position:
               
159-626
               

               
Cow position:
               
chr21:34654339-34653891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
159-630
               

               
Cow position:
               
chr21:39403258-39403735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
6, 73
               

               
Conread position:
               
159-657
               

               
Cow position:
               
chr21:13584785-13585282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 10
               

               
Conread position:
               
160-346
               

               
Cow position:
               
chr21:12298855-12298675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
160-456
               

               
Cow position:
               
chr21:31159655-31159372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 54
               

               
Conread position:
               
160-568
               

               
Cow position:
               
chr21:12461701-12462106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 72
               

               
Conread position:
               
160-605
               

               
Cow position:
               
chr21:17184186-17183750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 206
               

               
Conread position:
               
160-629
               

               
Cow position:
               
chr21:10867159-10866679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 179
               

               
Conread position:
               
161-328
               

               
Cow position:
               
chr21:29011709-29011871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
161-369
               

               
Cow position:
               
chr21:41041215-41041002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
70, 104
               

               
Conread position:
               
161-377
               

               
Cow position:
               
chr21:9905595-9905799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
161-390
               

               
Cow position:
               
chr21:40291487-40291709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
155, 20
               

               
Conread position:
               
161-426
               

               
Cow position:
               
chr21:36508497-36508241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
161-429
               

               
Cow position:
               
chr21:41917972-41918249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
70, 50
               

               
Conread position:
               
161-452
               

               
Cow position:
               
chr21:38720516-38720226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
70, 54
               

               
Conread position:
               
161-459
               

               
Cow position:
               
chr21:13395848-13395565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
71, 41
               

               
Conread position:
               
161-479
               

               
Cow position:
               
chr21:868652-868978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 264
               

               
Conread position:
               
161-479
               

               
Cow position:
               
chr21:976882-977197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
71, 32
               

               
Conread position:
               
161-479
               

               
Cow position:
               
chr21:6998208-6997887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 67
               

               
Conread position:
               
161-479
               

               
Cow position:
               
chr21:16152707-16152384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
82, 96
               

               
Conread position:
               
161-487
               

               
Cow position:
               
chr21:11779271-11779592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
69, 147
               

               
Conread position:
               
161-492
               

               
Cow position:
               
chr21:15543972-15544285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 38
               

               
Conread position:
               
161-493
               

               
Cow position:
               
chr21:37014158-37014471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
313, 71
               

               
Conread position:
               
161-528
               

               
Cow position:
               
chr21:8207024-8206674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 70
               

               
Conread position:
               
161-529
               

               
Cow position:
               
chr21:22121769-22121423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
86, 104
               

               
Conread position:
               
161-568
               

               
Cow position:
               
chr21:29978498-29978898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 32
               

               
Conread position:
               
161-604
               

               
Cow position:
               
chr21:29213892-29214320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
71, 22
               

               
Conread position:
               
161-605
               

               
Cow position:
               
chr21:21169240-21169667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
10, 33
               

               
Conread position:
               
161-622
               

               
Cow position:
               
chr21:28924391-28923937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
59, 293
               

               
Conread position:
               
161-624
               

               
Cow position:
               
chr21:5427194-5426755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 70
               

               
Conread position:
               
161-624
               

               
Cow position:
               
chr21:36763329-36762862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
78, 311
               

               
Conread position:
               
161-625
               

               
Cow position:
               
chr21:5898142-5898591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 22
               

               
Conread position:
               
161-626
               

               
Cow position:
               
chr21:6713257-6713731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 293
               

               
Conread position:
               
161-626
               

               
Cow position:
               
chr21:19195892-19196361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
17, 251
               

               
Conread position:
               
161-626
               

               
Cow position:
               
chr21:30149997-30150462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
82, 18
               

               
Conread position:
               
161-629
               

               
Cow position:
               
chr21:38449185-38449648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 70
               

               
Conread position:
               
161-630
               

               
Cow position:
               
chr21:33982547-33983007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
378, 70
               

               
Conread position:
               
161-630
               

               
Cow position:
               
chr21:38901030-38900576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 70
               

               
Conread position:
               
161-630
               

               
Cow position:
               
chr21:39888459-39888941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
71, 180
               

               
Conread position:
               
161-630
               

               
Cow position:
               
chr21:41974099-41974576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 182
               

               
Conread position:
               
161-630
               

               
Cow position:
               
chr21:42501319-42500836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 352
               

               
Conread position:
               
161-630
               

               
Cow position:
               
chr21:46848866-46849320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 70
               

               
Conread position:
               
161-631
               

               
Cow position:
               
chr21:3236770-3236334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 70
               

               
Conread position:
               
161-631
               

               
Cow position:
               
chr21:12154392-12153935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 69
               

               
Conread position:
               
161-636
               

               
Cow position:
               
chr21:9416508-9416039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 32
               

               
Conread position:
               
161-644
               

               
Cow position:
               
chr21:14464853-14464366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 250
               

               
Conread position:
               
161-646
               

               
Cow position:
               
chr21:6051772-6051293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 239
               

               
Conread position:
               
161-648
               

               
Cow position:
               
chr21:47464852-47465334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 143
               

               
Conread position:
               
162-356
               

               
Cow position:
               
chr21:438822-438634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
187, 68
               

               
Conread position:
               
162-535
               

               
Cow position:
               
chr21:10673376-10673026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 70
               

               
Conread position:
               
162-621
               

               
Cow position:
               
chr21:40589214-40589671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 313
               

               
Conread position:
               
162-630
               

               
Cow position:
               
chr21:643586-643140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
70, 30
               

               
Conread position:
               
162-630
               

               
Cow position:
               
chr21:37480230-37479759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
40, 45
               

               
Conread position:
               
163-406
               

               
Cow position:
               
chr21:9278793-9278544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
76, 219
               

               
Conread position:
               
163-455
               

               
Cow position:
               
chr21:20165904-20165612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
227, 21
               

               
Conread position:
               
163-487
               

               
Cow position:
               
chr21:30835631-30835300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
69, 178
               

               
Conread position:
               
163-493
               

               
Cow position:
               
chr21:10859075-10858748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
69, 185
               

               
Conread position:
               
163-573
               

               
Cow position:
               
chr21:47312-46898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
68, 116
               

               
Conread position:
               
163-630
               

               
Cow position:
               
chr21:27521077-27521522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 21
               

               
Conread position:
               
163-630
               

               
Cow position:
               
chr21:44251576-44252023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
69, 33
               

               
Conread position:
               
163-636
               

               
Cow position:
               
chr21:19958481-19958023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
69, 191
               

               
Conread position:
               
163-638
               

               
Cow position:
               
chr21:25345129-25344673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
74, 232
               

               
Conread position:
               
163-653
               

               
Cow position:
               
chr21:37706147-37706629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
69, 97
               

               
Conread position:
               
164-470
               

               
Cow position:
               
chr21:29014653-29014957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
234, 67
               

               
Conread position:
               
164-484
               

               
Cow position:
               
chr21:28919267-28919582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
239, 66
               

               
Conread position:
               
164-599
               

               
Cow position:
               
chr21:28244731-28244310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
186, 68
               

               
Conread position:
               
164-630
               

               
Cow position:
               
chr21:49699773-49700233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 208
               

               
Conread position:
               
165-630
               

               
Cow position:
               
chr21:30231433-30231900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
67, 113
               

               
Conread position:
               
166-370
               

               
Cow position:
               
chr21:24875614-24875409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
164, 0
               

               
Conread position:
               
166-490
               

               
Cow position:
               
chr21:22209981-22210309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 224
               

               
Conread position:
               
166-508
               

               
Cow position:
               
chr21:36756870-36756514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
130, 36
               

               
Conread position:
               
166-626
               

               
Cow position:
               
chr21:20160940-20160491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 33
               

               
Conread position:
               
166-634
               

               
Cow position:
               
chr21:23673007-23672541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 44
               

               
Conread position:
               
166-635
               

               
Cow position:
               
chr21:23822414-23821966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
65, 97
               

               
Conread position:
               
166-641
               

               
Cow position:
               
chr21:47763864-47764318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 27
               

               
Conread position:
               
168-597
               

               
Cow position:
               
chr21:10114072-10114493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
10, 110
               

               
Conread position:
               
168-628
               

               
Cow position:
               
chr21:28733652-28734107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 20
               

               
Conread position:
               
168-636
               

               
Cow position:
               
chr21:19615436-19614970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
10, 44
               

               
Conread position:
               
169-350
               

               
Cow position:
               
chr21:11353323-11353137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
169-368
               

               
Cow position:
               
chr21:48482271-48482469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
65, 169
               

               
Conread position:
               
169-406
               

               
Cow position:
               
chr21:31279512-31279278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
169-410
               

               
Cow position:
               
chr21:24797914-24797679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
62, 162
               

               
Conread position:
               
169-449
               

               
Cow position:
               
chr21:71845-71561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 106
               

               
Conread position:
               
169-451
               

               
Cow position:
               
chr21:28030538-28030263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
229, 34
               

               
Conread position:
               
169-462
               

               
Cow position:
               
chr21:42209386-42209667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
221, 68
               

               
Conread position:
               
169-475
               

               
Cow position:
               
chr21:19059832-19060136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
88, 108
               

               
Conread position:
               
169-479
               

               
Cow position:
               
chr21:17890562-17890250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
169-480
               

               
Cow position:
               
chr21:22014450-22014131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 31
               

               
Conread position:
               
169-483
               

               
Cow position:
               
chr21:36910996-36910683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
113, 85
               

               
Conread position:
               
169-484
               

               
Cow position:
               
chr21:17983230-17982917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
221, 15
               

               
Conread position:
               
169-486
               

               
Cow position:
               
chr21:8349581-8349267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
113, 24
               

               
Conread position:
               
169-487
               

               
Cow position:
               
chr21:8426702-8426379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
33, 62
               

               
Conread position:
               
169-488
               

               
Cow position:
               
chr21:45970920-45971236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
183, 61
               

               
Conread position:
               
169-493
               

               
Cow position:
               
chr21:16570148-16569833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
247, 24
               

               
Conread position:
               
169-496
               

               
Cow position:
               
chr21:44214370-44214053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
202, 62
               

               
Conread position:
               
169-524
               

               
Cow position:
               
chr21:33413838-33414183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 64
               

               
Conread position:
               
169-554
               

               
Cow position:
               
chr21:30222601-30222220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
223, 62
               

               
Conread position:
               
169-568
               

               
Cow position:
               
chr21:20153216-20152812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 113
               

               
Conread position:
               
169-573
               

               
Cow position:
               
chr21:17874931-17875336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
62, 96
               

               
Conread position:
               
169-604
               

               
Cow position:
               
chr21:30592055-30592475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
214, 63
               

               
Conread position:
               
169-607
               

               
Cow position:
               
chr21:32339486-32339911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 62
               

               
Conread position:
               
169-624
               

               
Cow position:
               
chr21:46972906-46973318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
12, 25
               

               
Conread position:
               
169-626
               

               
Cow position:
               
chr21:82318-81877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 42
               

               
Conread position:
               
169-626
               

               
Cow position:
               
chr21:23568484-23568015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
170, 85
               

               
Conread position:
               
169-626
               

               
Cow position:
               
chr21:42135360-42135817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 62
               

               
Conread position:
               
169-627
               

               
Cow position:
               
chr21:10264294-10263849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 112
               

               
Conread position:
               
169-629
               

               
Cow position:
               
chr21:27863260-27863715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 62
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr21:19083326-19083797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
73, 123
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr21:22718524-22718978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 42
               

               
Conread position:
               
169-631
               

               
Cow position:
               
chr21:18379083-18378647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
221, 35
               

               
Conread position:
               
169-631
               

               
Cow position:
               
chr21:24296506-24296963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
60, 113
               

               
Conread position:
               
169-631
               

               
Cow position:
               
chr21:27229544-27229993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 62
               

               
Conread position:
               
169-633
               

               
Cow position:
               
chr21:15444823-15445279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 154
               

               
Conread position:
               
170-419
               

               
Cow position:
               
chr21:29658532-29658286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
98, 62
               

               
Conread position:
               
170-470
               

               
Cow position:
               
chr21:21907183-21907473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
19, 62
               

               
Conread position:
               
170-493
               

               
Cow position:
               
chr21:1511544-1511223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 84
               

               
Conread position:
               
170-568
               

               
Cow position:
               
chr21:957927-957532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 109
               

               
Conread position:
               
170-568
               

               
Cow position:
               
chr21:10004625-10005021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 154
               

               
Conread position:
               
170-624
               

               
Cow position:
               
chr21:24858574-24858120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 272
               

               
Conread position:
               
170-626
               

               
Cow position:
               
chr21:3763493-3763930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
129, 23
               

               
Conread position:
               
170-629
               

               
Cow position:
               
chr21:41621386-41620923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 123
               

               
Conread position:
               
170-630
               

               
Cow position:
               
chr21:4400051-4399602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 58
               

               
Conread position:
               
170-637
               

               
Cow position:
               
chr21:5970588-5971040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
189, 67
               

               
Conread position:
               
171-441
               

               
Cow position:
               
chr21:44724119-44724380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
171-479
               

               
Cow position:
               
chr21:47713750-47714056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 105
               

               
Conread position:
               
171-629
               

               
Cow position:
               
chr21:44565472-44565898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
201, 26
               

               
Conread position:
               
171-630
               

               
Cow position:
               
chr21:18568380-18568848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 310
               

               
Conread position:
               
171-630
               

               
Cow position:
               
chr21:38918459-38918018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
79, 163
               

               
Conread position:
               
171-633
               

               
Cow position:
               
chr21:3585107-3585556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 251
               

               
Conread position:
               
172-659
               

               
Cow position:
               
chr21:11644710-11645196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 330
               

               
Conread position:
               
174-644
               

               
Cow position:
               
chr21:29001892-29002373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 340
               

               
Conread position:
               
175-607
               

               
Cow position:
               
chr21:12087830-12087420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 61
               

               
Conread position:
               
176-481
               

               
Cow position:
               
chr21:1764606-1764919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 167
               

               
Conread position:
               
176-622
               

               
Cow position:
               
chr21:22861244-22860813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
214, 69
               

               
Conread position:
               
176-625
               

               
Cow position:
               
chr21:17193496-17193952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 333
               

               
Conread position:
               
176-630
               

               
Cow position:
               
chr21:29069071-29069526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 53
               

               
Conread position:
               
176-631
               

               
Cow position:
               
chr21:11739867-11740330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
55, 33
               

               
Conread position:
               
176-636
               

               
Cow position:
               
chr21:7673365-7672930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
107, 55
               

               
Conread position:
               
176-638
               

               
Cow position:
               
chr21:41580007-41579546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 44
               

               
Conread position:
               
177-423
               

               
Cow position:
               
chr21:41287545-41287792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
213, 54
               

               
Conread position:
               
177-493
               

               
Cow position:
               
chr21:41107525-41107830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
27, 55
               

               
Conread position:
               
177-563
               

               
Cow position:
               
chr21:34151827-34151450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
92, 16
               

               
Conread position:
               
177-626
               

               
Cow position:
               
chr21:8351043-8351497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
143, 233
               

               
Conread position:
               
177-630
               

               
Cow position:
               
chr21:14760808-14760383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 36
               

               
Conread position:
               
179-490
               

               
Cow position:
               
chr21:7394618-7394316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
222, 30
               

               
Conread position:
               
179-490
               

               
Cow position:
               
chr21:10561336-10561649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
53, 77
               

               
Conread position:
               
179-568
               

               
Cow position:
               
chr21:7824941-7825311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
52, 77
               

               
Conread position:
               
179-630
               

               
Cow position:
               
chr21:3360767-3361211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 181
               

               
Conread position:
               
192-607
               

               
Cow position:
               
chr21:9990747-9990340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
40, 190
               

               
Conread position:
               
194-509
               

               
Cow position:
               
chr21:7377689-7378013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
206-625
               

               
Cow position:
               
chr21:17642767-17643162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
184, 48
               

               
Conread position:
               
207-605
               

               
Cow position:
               
chr21:27145767-27146164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
24, 96
               

               
Conread position:
               
210-487
               

               
Cow position:
               
chr21:6758564-6758284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
19, 8
               

               
Conread position:
               
210-492
               

               
Cow position:
               
chr21:36910149-36909867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
8, 170
               

               
Conread position:
               
211-626
               

               
Cow position:
               
chr21:45329737-45330133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
168, 20
               

               
Conread position:
               
226-626
               

               
Cow position:
               
chr21:28993421-28993819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
10, 55
               

               
Conread position:
               
230-630
               

               
Cow position:
               
chr21:33210385-33210001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
244, 152
               

               
Conread position:
               
231-467
               

               
Cow position:
               
chr21:26753685-26753454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
224, 24
               

               
Conread position:
               
231-630
               

               
Cow position:
               
chr21:5153815-5153420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
247, 24
               

               
Conread position:
               
232-444
               

               
Cow position:
               
chr21:17063116-17062919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
232-628
               

               
Cow position:
               
chr21:42053085-42053460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
223, 72
               

               
Conread position:
               
232-659
               

               
Cow position:
               
chr21:25383218-25382784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
110, 21
               

               
Conread position:
               
235-630
               

               
Cow position:
               
chr21:44671936-44671556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 77
               

               
Conread position:
               
235-634
               

               
Cow position:
               
chr21:396059-395673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 103
               

               
Conread position:
               
244-446
               

               
Cow position:
               
chr21:6388182-6387980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
169, 142
               

               
Conread position:
               
245-568
               

               
Cow position:
               
chr21:42007280-42007595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
147, 107
               

               
Conread position:
               
245-631
               

               
Cow position:
               
chr21:31691664-31691279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 29
               

               
Conread position:
               
245-644
               

               
Cow position:
               
chr21:1059256-1058866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 11
               

               
Conread position:
               
246-464
               

               
Cow position:
               
chr21:29014378-29014598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 28
               

               
Conread position:
               
246-522
               

               
Cow position:
               
chr21:30256093-30256366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
153, 64
               

               
Conread position:
               
246-626
               

               
Cow position:
               
chr21:10151985-10151602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
126, 18
               

               
Conread position:
               
246-626
               

               
Cow position:
               
chr21:42384689-42384312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 151
               

               
Conread position:
               
247-441
               

               
Cow position:
               
chr21:13036726-13036915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
247-452
               

               
Cow position:
               
chr21:10538075-10538276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
247-478
               

               
Cow position:
               
chr21:10410402-10410168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
153, 74
               

               
Conread position:
               
247-479
               

               
Cow position:
               
chr21:43259399-43259170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
27, 41
               

               
Conread position:
               
247-493
               

               
Cow position:
               
chr21:15976812-15976564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
155, 52
               

               
Conread position:
               
247-493
               

               
Cow position:
               
chr21:26245094-26244852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 144
               

               
Conread position:
               
247-544
               

               
Cow position:
               
chr21:40168446-40168745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
150, 79
               

               
Conread position:
               
247-566
               

               
Cow position:
               
chr21:24642692-24642386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
147, 39
               

               
Conread position:
               
247-584
               

               
Cow position:
               
chr21:10823739-10823402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
232, 90
               

               
Conread position:
               
247-601
               

               
Cow position:
               
chr21:10001255-10000912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 255
               

               
Conread position:
               
247-604
               

               
Cow position:
               
chr21:7581725-7582081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 147
               

               
Conread position:
               
247-605
               

               
Cow position:
               
chr21:13089294-13089652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
144, 76
               

               
Conread position:
               
247-608
               

               
Cow position:
               
chr21:26647836-26648181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
147, 17
               

               
Conread position:
               
247-622
               

               
Cow position:
               
chr21:28626417-28626052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
247-624
               

               
Cow position:
               
chr21:23321898-23322272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 196
               

               
Conread position:
               
247-626
               

               
Cow position:
               
chr21:3818388-3818023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
153, 39
               

               
Conread position:
               
247-630
               

               
Cow position:
               
chr21:33899-33524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 144
               

               
Conread position:
               
247-646
               

               
Cow position:
               
chr21:29485158-29484771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
248-552
               

               
Cow position:
               
chr21:25628733-25629031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
155, 37
               

               
Conread position:
               
248-561
               

               
Cow position:
               
chr21:12301332-12301632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
138, 192
               

               
Conread position:
               
248-564
               

               
Cow position:
               
chr21:45920880-45921190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 16
               

               
Conread position:
               
248-621
               

               
Cow position:
               
chr21:33264024-33263660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
12, 194
               

               
Conread position:
               
248-631
               

               
Cow position:
               
chr21:28429623-28429251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
85, 149
               

               
Conread position:
               
248-644
               

               
Cow position:
               
chr21:10118745-10118342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 126
               

               
Conread position:
               
249-389
               

               
Cow position:
               
chr21:18135697-18135834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
249-435
               

               
Cow position:
               
chr21:40769471-40769281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
249-449
               

               
Cow position:
               
chr21:37235563-37235362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
126, 167
               

               
Conread position:
               
249-478
               

               
Cow position:
               
chr21:3254329-3254099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
141, 68
               

               
Conread position:
               
249-493
               

               
Cow position:
               
chr21:31662181-31661937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
130, 55
               

               
Conread position:
               
249-493
               

               
Cow position:
               
chr21:46551924-46552174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
249-551
               

               
Cow position:
               
chr21:21181354-21181058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
133, 19
               

               
Conread position:
               
249-584
               

               
Cow position:
               
chr21:46607416-46607735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
148, 28
               

               
Conread position:
               
249-588
               

               
Cow position:
               
chr21:10633463-10633796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
150, 28
               

               
Conread position:
               
249-622
               

               
Cow position:
               
chr21:17428673-17428314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
150, 37
               

               
Conread position:
               
249-623
               

               
Cow position:
               
chr21:45356011-45355646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 126
               

               
Conread position:
               
249-626
               

               
Cow position:
               
chr21:16696549-16696177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
40, 9
               

               
Conread position:
               
249-626
               

               
Cow position:
               
chr21:23478554-23478912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
133, 62
               

               
Conread position:
               
249-626
               

               
Cow position:
               
chr21:24698658-24698296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
118, 50
               

               
Conread position:
               
249-626
               

               
Cow position:
               
chr21:31662645-31662267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 177
               

               
Conread position:
               
249-626
               

               
Cow position:
               
chr21:34565037-34565406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
133, 54
               

               
Conread position:
               
249-629
               

               
Cow position:
               
chr21:9353625-9353244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
73, 55
               

               
Conread position:
               
249-629
               

               
Cow position:
               
chr21:21223459-21223094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
23, 32
               

               
Conread position:
               
249-630
               

               
Cow position:
               
chr21:25800577-25800217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
56, 62
               

               
Conread position:
               
249-630
               

               
Cow position:
               
chr21:42348518-42348875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
228, 15
               

               
Conread position:
               
249-631
               

               
Cow position:
               
chr21:4099047-4098677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 82
               

               
Conread position:
               
249-631
               

               
Cow position:
               
chr21:23786209-23785834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
150, 50
               

               
Conread position:
               
249-631
               

               
Cow position:
               
chr21:46242063-46242437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 45
               

               
Conread position:
               
249-633
               

               
Cow position:
               
chr21:18941657-18942028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
141, 37
               

               
Conread position:
               
249-638
               

               
Cow position:
               
chr21:33727284-33727666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 11
               

               
Conread position:
               
249-639
               

               
Cow position:
               
chr21:34740022-34739643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 196
               

               
Conread position:
               
249-646
               

               
Cow position:
               
chr21:4276426-4276805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 37
               

               
Conread position:
               
249-647
               

               
Cow position:
               
chr21:35997349-35996958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 50
               

               
Conread position:
               
250-402
               

               
Cow position:
               
chr21:30119871-30119719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
250-553
               

               
Cow position:
               
chr21:6316390-6316085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
140, 53
               

               
Conread position:
               
250-605
               

               
Cow position:
               
chr21:28989790-28989443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 61
               

               
Conread position:
               
250-622
               

               
Cow position:
               
chr21:45473581-45473947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 141
               

               
Conread position:
               
250-630
               

               
Cow position:
               
chr21:23800951-23801318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 247
               

               
Conread position:
               
250-630
               

               
Cow position:
               
chr21:36795780-36795405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 245
               

               
Conread position:
               
250-630
               

               
Cow position:
               
chr21:41597988-41597618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 138
               

               
Conread position:
               
250-634
               

               
Cow position:
               
chr21:13127922-13128292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
45, 30
               

               
Conread position:
               
250-643
               

               
Cow position:
               
chr21:18779799-18780180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
146, 102
               

               
Conread position:
               
251-466
               

               
Cow position:
               
chr21:471850-471637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
251-488
               

               
Cow position:
               
chr21:23397671-23397908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
128, 48
               

               
Conread position:
               
251-607
               

               
Cow position:
               
chr21:18790390-18790730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 52
               

               
Conread position:
               
251-607
               

               
Cow position:
               
chr21:33563179-33562841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 62
               

               
Conread position:
               
252-432
               

               
Cow position:
               
chr21:46132749-46132569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
252-459
               

               
Cow position:
               
chr21:44860944-44861144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
166, 77
               

               
Conread position:
               
252-630
               

               
Cow position:
               
chr21:10514976-10514610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 16
               

               
Conread position:
               
252-630
               

               
Cow position:
               
chr21:42413922-42414299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 207
               

               
Conread position:
               
254-626
               

               
Cow position:
               
chr21:42841424-42841784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
136, 225
               

               
Conread position:
               
255-388
               

               
Cow position:
               
chr21:12207630-12207763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
255-451
               

               
Cow position:
               
chr21:40192133-40192326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
255-479
               

               
Cow position:
               
chr21:38267890-38268092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
255-604
               

               
Cow position:
               
chr21:8235390-8235716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
255-607
               

               
Cow position:
               
chr21:37344929-37345276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 107
               

               
Conread position:
               
256-459
               

               
Cow position:
               
chr21:734760-734563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
256-533
               

               
Cow position:
               
chr21:32903984-32904258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
134, 43
               

               
Conread position:
               
256-624
               

               
Cow position:
               
chr21:15741914-15742282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
97, 245
               

               
Conread position:
               
258-488
               

               
Cow position:
               
chr21:297923-297689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
121, 152
               

               
Conread position:
               
258-541
               

               
Cow position:
               
chr21:42022444-42022178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
275, 120
               

               
Conread position:
               
258-568
               

               
Cow position:
               
chr21:20260150-20260456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
6, 16
               

               
Conread position:
               
258-601
               

               
Cow position:
               
chr21:28211360-28211028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
24, 16
               

               
Conread position:
               
258-607
               

               
Cow position:
               
chr21:15911569-15911226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
132, 72
               

               
Conread position:
               
258-626
               

               
Cow position:
               
chr21:38121270-38120914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
134, 179
               

               
Conread position:
               
259-528
               

               
Cow position:
               
chr21:49649796-49649536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
123, 40
               

               
Conread position:
               
259-621
               

               
Cow position:
               
chr21:30990119-30990456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
136, 62
               

               
Conread position:
               
259-624
               

               
Cow position:
               
chr21:24607552-24607194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
10, 51
               

               
Conread position:
               
259-630
               

               
Cow position:
               
chr21:32237447-32237100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
47, 42
               

               
Conread position:
               
259-644
               

               
Cow position:
               
chr21:12801579-12801955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
91, 195
               

               
Conread position:
               
260-624
               

               
Cow position:
               
chr21:19258985-19258635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 70
               

               
Conread position:
               
264-486
               

               
Cow position:
               
chr21:48176983-48176764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
212, 64
               

               
Conread position:
               
264-554
               

               
Cow position:
               
chr21:36789959-36789672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
24, 201
               

               
Conread position:
               
264-624
               

               
Cow position:
               
chr21:5392372-5392733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
77, 229
               

               
Conread position:
               
265-626
               

               
Cow position:
               
chr21:36643066-36642714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
207, 129
               

               
Conread position:
               
267-626
               

               
Cow position:
               
chr21:1591714-1591358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 232
               

               
Conread position:
               
268-470
               

               
Cow position:
               
chr21:19514022-19513821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
97, 43
               

               
Conread position:
               
268-630
               

               
Cow position:
               
chr21:5567145-5566792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
237, 66
               

               
Conread position:
               
269-630
               

               
Cow position:
               
chr21:41878627-41878279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 32
               

               
Conread position:
               
270-493
               

               
Cow position:
               
chr21:17009138-17008913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
270-630
               

               
Cow position:
               
chr21:7564150-7564519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
112, 222
               

               
Conread position:
               
270-630
               

               
Cow position:
               
chr21:39401747-39401403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 41
               

               
Conread position:
               
271-630
               

               
Cow position:
               
chr21:13738708-13738374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
205, 15
               

               
Conread position:
               
273-478
               

               
Cow position:
               
chr21:9697926-9698135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
273-493
               

               
Cow position:
               
chr21:46141202-46140973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
273-547
               

               
Cow position:
               
chr21:18155412-18155688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
123, 234
               

               
Conread position:
               
273-568
               

               
Cow position:
               
chr21:17638046-17637763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
233, 117
               

               
Conread position:
               
273-607
               

               
Cow position:
               
chr21:41198245-41198585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
117, 232
               

               
Conread position:
               
273-620
               

               
Cow position:
               
chr21:22856372-22856029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
117, 72
               

               
Conread position:
               
273-629
               

               
Cow position:
               
chr21:13048039-13048394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
124, 228
               

               
Conread position:
               
273-629
               

               
Cow position:
               
chr21:40786831-40786474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
117, 42
               

               
Conread position:
               
273-630
               

               
Cow position:
               
chr21:27123967-27124325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
100, 236
               

               
Conread position:
               
273-630
               

               
Cow position:
               
chr21:46912699-46912347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
115, 84
               

               
Conread position:
               
273-630
               

               
Cow position:
               
chr21:47760922-47760580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
124, 100
               

               
Conread position:
               
273-636
               

               
Cow position:
               
chr21:12366525-12366184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
277-630
               

               
Cow position:
               
chr21:23499678-23500018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
11, 23
               

               
Conread position:
               
278-517
               

               
Cow position:
               
chr21:33359892-33360131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
20, 34
               

               
Conread position:
               
280-456
               

               
Cow position:
               
chr21:8420771-8420593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
117, 28
               

               
Conread position:
               
280-490
               

               
Cow position:
               
chr21:45915571-45915772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
194, 48
               

               
Conread position:
               
280-493
               

               
Cow position:
               
chr21:40432592-40432381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
194, 111
               

               
Conread position:
               
280-568
               

               
Cow position:
               
chr21:11251016-11250730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
197, 50
               

               
Conread position:
               
280-568
               

               
Cow position:
               
chr21:11360183-11359902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
15, 23
               

               
Conread position:
               
280-626
               

               
Cow position:
               
chr21:43357109-43357452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
280-630
               

               
Cow position:
               
chr21:34390828-34391167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 217
               

               
Conread position:
               
280-631
               

               
Cow position:
               
chr21:18844865-18845213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
20, 25
               

               
Conread position:
               
280-631
               

               
Cow position:
               
chr21:24888145-24887811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 16
               

               
Conread position:
               
280-636
               

               
Cow position:
               
chr21:4998348-4998688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
196, 92
               

               
Conread position:
               
280-651
               

               
Cow position:
               
chr21:30606939-30607302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 227
               

               
Conread position:
               
280-652
               

               
Cow position:
               
chr21:34160099-34159744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
67, 112
               

               
Conread position:
               
280-653
               

               
Cow position:
               
chr21:45330460-45330825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 50
               

               
Conread position:
               
281-454
               

               
Cow position:
               
chr21:38774335-38774156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
51, 44
               

               
Conread position:
               
281-483
               

               
Cow position:
               
chr21:35899987-35899786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
27, 57
               

               
Conread position:
               
281-561
               

               
Cow position:
               
chr21:20193040-20192774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
114, 49
               

               
Conread position:
               
281-616
               

               
Cow position:
               
chr21:46144105-46143760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
281-626
               

               
Cow position:
               
chr21:42540076-42540413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
91, 112
               

               
Conread position:
               
281-646
               

               
Cow position:
               
chr21:18850078-18850429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
50, 217
               

               
Conread position:
               
281-653
               

               
Cow position:
               
chr21:18828156-18828529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
111, 192
               

               
Conread position:
               
283-568
               

               
Cow position:
               
chr21:20418538-20418825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
111, 208
               

               
Conread position:
               
286-625
               

               
Cow position:
               
chr21:19363318-19363658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
96, 219
               

               
Conread position:
               
287-626
               

               
Cow position:
               
chr21:44515404-44515081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
114, 175
               

               
Conread position:
               
288-626
               

               
Cow position:
               
chr21:724746-725085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 45
               

               
Conread position:
               
291-630
               

               
Cow position:
               
chr21:18289799-18289464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
111, 175
               

               
Conread position:
               
292-538
               

               
Cow position:
               
chr21:11198013-11198256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
62, 106
               

               
Conread position:
               
293-490
               

               
Cow position:
               
chr21:35354665-35354468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
87, 104
               

               
Conread position:
               
296-626
               

               
Cow position:
               
chr21:33997096-33997415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 141
               

               
Conread position:
               
296-630
               

               
Cow position:
               
chr21:28512645-28512335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
296-642
               

               
Cow position:
               
chr21:24865286-24864945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
94, 17
               

               
Conread position:
               
297-608
               

               
Cow position:
               
chr21:44754648-44754952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
76, 148
               

               
Conread position:
               
297-625
               

               
Cow position:
               
chr21:32574860-32574541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
45, 129
               

               
Conread position:
               
297-625
               

               
Cow position:
               
chr21:45151499-45151815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
215, 93
               

               
Conread position:
               
298-479
               

               
Cow position:
               
chr21:9302298-9302480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
90, 68
               

               
Conread position:
               
299-613
               

               
Cow position:
               
chr21:13488655-13488339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
65, 203
               

               
Conread position:
               
299-626
               

               
Cow position:
               
chr21:33729558-33729240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
91, 109
               

               
Conread position:
               
299-630
               

               
Cow position:
               
chr21:6834177-6833855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
101, 91
               

               
Conread position:
               
299-630
               

               
Cow position:
               
chr21:8618392-8618077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
179, 76
               

               
Conread position:
               
300-624
               

               
Cow position:
               
chr21:25286644-25286318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
93, 139
               

               
Conread position:
               
302-629
               

               
Cow position:
               
chr21:36162832-36163159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
14, 201
               

               
Conread position:
               
303-568
               

               
Cow position:
               
chr21:17856668-17856408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
90, 163
               

               
Conread position:
               
303-630
               

               
Cow position:
               
chr21:5636596-5636918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 91
               

               
Conread position:
               
304-636
               

               
Cow position:
               
chr21:40899462-40899133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
86, 111
               

               
Conread position:
               
311-588
               

               
Cow position:
               
chr21:13840443-13840167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
79, 191
               

               
Conread position:
               
311-630
               

               
Cow position:
               
chr21:20262219-20262531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
74, 88
               

               
Conread position:
               
311-630
               

               
Cow position:
               
chr21:26743832-26744139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
85, 48
               

               
Conread position:
               
311-630
               

               
Cow position:
               
chr21:32192290-32191973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
88, 80
               

               
Conread position:
               
311-637
               

               
Cow position:
               
chr21:10727393-10727077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
92, 161
               

               
Conread position:
               
314-527
               

               
Cow position:
               
chr21:38664752-38664541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
83, 128
               

               
Conread position:
               
314-605
               

               
Cow position:
               
chr21:46829159-46829440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
100, 50
               

               
Conread position:
               
314-626
               

               
Cow position:
               
chr21:27607246-27607556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
43, 98
               

               
Conread position:
               
315-604
               

               
Cow position:
               
chr21:17175255-17174971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
75, 15
               

               
Conread position:
               
319-631
               

               
Cow position:
               
chr21:4795333-4795024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
53, 6
               

               
Conread position:
               
320-493
               

               
Cow position:
               
chr21:8527377-8527545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
320-535
               

               
Cow position:
               
chr21:18041740-18041953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
77, 190
               

               
Conread position:
               
320-571
               

               
Cow position:
               
chr21:13713733-13713982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
78, 181
               

               
Conread position:
               
321-501
               

               
Cow position:
               
chr21:5612214-5612034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
69, 26
               

               
Conread position:
               
321-631
               

               
Cow position:
               
chr21:16187701-16187998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
75, 111
               

               
Conread position:
               
322-583
               

               
Cow position:
               
chr21:45439131-45439401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
76, 178
               

               
Conread position:
               
322-630
               

               
Cow position:
               
chr21:4904862-4905164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
65, 75
               

               
Conread position:
               
324-490
               

               
Cow position:
               
chr21:34727132-34727305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
324-630
               

               
Cow position:
               
chr21:3380975-3381278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
64, 173
               

               
Conread position:
               
325-493
               

               
Cow position:
               
chr21:30236722-30236885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
149, 47
               

               
Conread position:
               
325-630
               

               
Cow position:
               
chr21:4189943-4189637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
71, 179
               

               
Conread position:
               
325-630
               

               
Cow position:
               
chr21:10070829-10071126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 171
               

               
Conread position:
               
326-644
               

               
Cow position:
               
chr21:27614394-27614076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
65, 89
               

               
Conread position:
               
327-626
               

               
Cow position:
               
chr21:5454891-5455175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
133, 71
               

               
Conread position:
               
329-630
               

               
Cow position:
               
chr21:16612723-16612432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
66, 123
               

               
Conread position:
               
330-626
               

               
Cow position:
               
chr21:6764603-6764895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
69, 87
               

               
Conread position:
               
332-485
               

               
Cow position:
               
chr21:4280577-4280732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
62, 114
               

               
Conread position:
               
332-493
               

               
Cow position:
               
chr21:13495638-13495472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
332-494
               

               
Cow position:
               
chr21:19210809-19210645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
71, 62
               

               
Conread position:
               
332-550
               

               
Cow position:
               
chr21:5985223-5985436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
149, 63
               

               
Conread position:
               
332-621
               

               
Cow position:
               
chr21:6102166-6102457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
70, 58
               

               
Conread position:
               
332-626
               

               
Cow position:
               
chr21:2515266-2514981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
145, 170
               

               
Conread position:
               
332-626
               

               
Cow position:
               
chr21:5597247-5596953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
53, 167
               

               
Conread position:
               
332-626
               

               
Cow position:
               
chr21:17674138-17674429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
69, 31
               

               
Conread position:
               
332-626
               

               
Cow position:
               
chr21:24222442-24222731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
58, 166
               

               
Conread position:
               
332-627
               

               
Cow position:
               
chr21:25537093-25536804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
29, 68
               

               
Conread position:
               
332-630
               

               
Cow position:
               
chr21:32536072-32535779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
58, 164
               

               
Conread position:
               
332-636
               

               
Cow position:
               
chr21:11640117-11639817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
57, 161
               

               
Conread position:
               
332-636
               

               
Cow position:
               
chr21:26835196-26835498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
148, 162
               

               
Conread position:
               
333-479
               

               
Cow position:
               
chr21:22720322-22720174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
66, 119
               

               
Conread position:
               
333-589
               

               
Cow position:
               
chr21:41454854-41455107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
63, 132
               

               
Conread position:
               
333-637
               

               
Cow position:
               
chr21:45867028-45866732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
64, 141
               

               
Conread position:
               
334-493
               

               
Cow position:
               
chr21:2260272-2260429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
142, 10
               

               
Conread position:
               
334-554
               

               
Cow position:
               
chr21:34722695-34722912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
135, 64
               

               
Conread position:
               
335-535
               

               
Cow position:
               
chr21:41514901-41514692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
44, 179
               

               
Conread position:
               
335-622
               

               
Cow position:
               
chr21:3813391-3813672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
59, 102
               

               
Conread position:
               
335-626
               

               
Cow position:
               
chr21:47802167-47802453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 82
               

               
Conread position:
               
335-636
               

               
Cow position:
               
chr21:20925411-20925709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
338-573
               

               
Cow position:
               
chr21:2294072-2293852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
138, 57
               

               
Conread position:
               
338-606
               

               
Cow position:
               
chr21:9847921-9848167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
340-489
               

               
Cow position:
               
chr21:29224773-29224926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
130, 82
               

               
Conread position:
               
340-609
               

               
Cow position:
               
chr21:39450074-39450342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
59, 90
               

               
Conread position:
               
340-625
               

               
Cow position:
               
chr21:28443287-28443571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
43, 9
               

               
Conread position:
               
340-626
               

               
Cow position:
               
chr21:35569296-35569577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
8, 59
               

               
Conread position:
               
340-658
               

               
Cow position:
               
chr21:12960812-12961123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
50, 9
               

               
Conread position:
               
341-626
               

               
Cow position:
               
chr21:13898274-13897998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
58, 160
               

               
Conread position:
               
342-607
               

               
Cow position:
               
chr21:49662036-49662291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
344-626
               

               
Cow position:
               
chr21:8985635-8985356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
53, 110
               

               
Conread position:
               
344-626
               

               
Cow position:
               
chr21:21077409-21077136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
51, 76
               

               
Conread position:
               
344-626
               

               
Cow position:
               
chr21:23192429-23192711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
45, 151
               

               
Conread position:
               
344-633
               

               
Cow position:
               
chr21:28882221-28881940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
11, 142
               

               
Conread position:
               
345-644
               

               
Cow position:
               
chr21:24765364-24765073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
127, 15
               

               
Conread position:
               
346-624
               

               
Cow position:
               
chr21:18783607-18783872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
193, 47
               

               
Conread position:
               
346-634
               

               
Cow position:
               
chr21:1464311-1464028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
126, 152
               

               
Conread position:
               
347-566
               

               
Cow position:
               
chr21:28617671-28617454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
25, 55
               

               
Conread position:
               
347-622
               

               
Cow position:
               
chr21:2785696-2785966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
53, 77
               

               
Conread position:
               
347-630
               

               
Cow position:
               
chr21:17410578-17410856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
347-630
               

               
Cow position:
               
chr21:18935830-18935564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
127, 29
               

               
Conread position:
               
347-630
               

               
Cow position:
               
chr21:27743829-27743545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 128
               

               
Conread position:
               
347-659
               

               
Cow position:
               
chr21:5137407-5137717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
49, 26
               

               
Conread position:
               
349-644
               

               
Cow position:
               
chr21:3047755-3047475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
47, 123
               

               
Conread position:
               
350-479
               

               
Cow position:
               
chr21:7391200-7391329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 47
               

               
Conread position:
               
350-561
               

               
Cow position:
               
chr21:34141107-34141316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 148
               

               
Conread position:
               
350-565
               

               
Cow position:
               
chr21:37886489-37886278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 106
               

               
Conread position:
               
350-568
               

               
Cow position:
               
chr21:39809971-39809764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
51, 44
               

               
Conread position:
               
350-595
               

               
Cow position:
               
chr21:36793972-36793730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
40, 145
               

               
Conread position:
               
355-626
               

               
Cow position:
               
chr21:34053121-34053380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
35, 61
               

               
Conread position:
               
355-626
               

               
Cow position:
               
chr21:42913671-42913939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
43, 155
               

               
Conread position:
               
356-493
               

               
Cow position:
               
chr21:9979899-9980032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
45, 38
               

               
Conread position:
               
356-528
               

               
Cow position:
               
chr21:4568356-4568187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
38, 106
               

               
Conread position:
               
356-621
               

               
Cow position:
               
chr21:21480113-21480367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
183, 61
               

               
Conread position:
               
356-624
               

               
Cow position:
               
chr21:17714389-17714122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
48, 137
               

               
Conread position:
               
357-626
               

               
Cow position:
               
chr21:40058871-40058613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
357-630
               

               
Cow position:
               
chr21:911896-912164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
43, 145
               

               
Conread position:
               
360-634
               

               
Cow position:
               
chr21:31676566-31676297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
36, 55
               

               
Conread position:
               
361-633
               

               
Cow position:
               
chr21:17302313-17302576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
89, 28
               

               
Conread position:
               
368-644
               

               
Cow position:
               
chr21:21143960-21143670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
370-623
               

               
Cow position:
               
chr21:18495025-18494776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
5, 29
               

               
Conread position:
               
378-630
               

               
Cow position:
               
chr21:40244489-40244237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
5, 120
               

               
Conread position:
               
382-630
               

               
Cow position:
               
chr21:13034999-13035246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
17, 114
               

               
Conread position:
               
384-568
               

               
Cow position:
               
chr21:5344699-5344519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
88, 12
               

               
Conread position:
               
384-630
               

               
Cow position:
               
chr21:37361434-37361671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
23, 6
               

               
Conread position:
               
384-634
               

               
Cow position:
               
chr21:12617178-12616938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
93, 25
               

               
Conread position:
               
385-644
               

               
Cow position:
               
chr21:28944326-28944577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
241, 13
               

               
Conread position:
               
393-620
               

               
Cow position:
               
chr21:28027840-28027616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
34, 13
               

               
Conread position:
               
394-604
               

               
Cow position:
               
chr21:45375654-45375444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
105, 149
               

               
Conread position:
               
394-635
               

               
Cow position:
               
chr21:11706715-11706953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
77, 11
               

               
Conread position:
               
394-650
               

               
Cow position:
               
chr21:36819181-36819432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
50, 5
               

               
Conread position:
               
395-629
               

               
Cow position:
               
chr21:34738641-34738402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
108, 86
               

               
Conread position:
               
396-626
               

               
Cow position:
               
chr21:7132437-7132655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
81, 29
               

               
Conread position:
               
396-631
               

               
Cow position:
               
chr21:41957146-41957372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
81, 95
               

               
Conread position:
               
396-636
               

               
Cow position:
               
chr21:48250997-48251233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
143, 94
               

               
Conread position:
               
398-496
               

               
Cow position:
               
chr21:43614377-43614280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
398-620
               

               
Cow position:
               
chr21:42024149-42023938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
79, 19
               

               
Conread position:
               
398-626
               

               
Cow position:
               
chr21:394047-393828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
79, 50
               

               
Conread position:
               
398-626
               

               
Cow position:
               
chr21:42170664-42170437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
82, 102
               

               
Conread position:
               
398-626
               

               
Cow position:
               
chr21:48484419-48484634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
96, 83
               

               
Conread position:
               
398-630
               

               
Cow position:
               
chr21:42145941-42145719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
81, 50
               

               
Conread position:
               
398-630
               

               
Cow position:
               
chr21:42905348-42905575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 100
               

               
Conread position:
               
398-638
               

               
Cow position:
               
chr21:42190147-42190370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
207, 83
               

               
Conread position:
               
398-646
               

               
Cow position:
               
chr21:2927174-2927416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
141, 74
               

               
Conread position:
               
399-630
               

               
Cow position:
               
chr21:34659061-34658837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 95
               

               
Conread position:
               
401-603
               

               
Cow position:
               
chr21:9998692-9998891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
31, 26
               

               
Conread position:
               
402-630
               

               
Cow position:
               
chr21:9278405-9278175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
79, 106
               

               
Conread position:
               
404-626
               

               
Cow position:
               
chr21:42463812-42464037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
75, 36
               

               
Conread position:
               
409-626
               

               
Cow position:
               
chr21:24714674-24714460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
31, 92
               

               
Conread position:
               
413-636
               

               
Cow position:
               
chr21:4080372-4080151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
60, 86
               

               
Conread position:
               
415-630
               

               
Cow position:
               
chr21:23683559-23683353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
62, 93
               

               
Conread position:
               
425-636
               

               
Cow position:
               
chr21:7716783-7716994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
52, 70
               

               
Conread position:
               
439-616
               

               
Cow position:
               
chr21:45623277-45623450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
100, 56
               

               
Conread position:
               
439-630
               

               
Cow position:
               
chr21:31159250-31159058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
61, 42
               
Show alignments to all cow chromosomes.