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Cow genome map

           
Conread name:
           
Ova1-OVRM10096F06
        

               
Conread position:
               
126-479
               

               
Cow position:
               
chr29:17297378-17297016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
126-564
               

               
Cow position:
               
chr29:28979282-28979676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
350, 42
               

               
Conread position:
               
128-568
               

               
Cow position:
               
chr29:10153579-10153990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
323, 18
               

               
Conread position:
               
128-630
               

               
Cow position:
               
chr29:15944796-15944307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
115, 166
               

               
Conread position:
               
131-630
               

               
Cow position:
               
chr29:18878256-18878763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
116, 12
               

               
Conread position:
               
140-490
               

               
Cow position:
               
chr29:35084005-35084353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
111, 18
               

               
Conread position:
               
140-493
               

               
Cow position:
               
chr29:31674852-31674497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
255, 8
               

               
Conread position:
               
140-567
               

               
Cow position:
               
chr29:26259700-26259276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
9, 92
               

               
Conread position:
               
143-372
               

               
Cow position:
               
chr29:7954742-7954978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 128
               

               
Conread position:
               
145-493
               

               
Cow position:
               
chr29:36220759-36220394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
66, 21
               

               
Conread position:
               
148-445
               

               
Cow position:
               
chr29:6208257-6207980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
21, 54
               

               
Conread position:
               
149-553
               

               
Cow position:
               
chr29:20910477-20910886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
101, 21
               

               
Conread position:
               
149-634
               

               
Cow position:
               
chr29:26779090-26778618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
190, 82
               

               
Conread position:
               
157-630
               

               
Cow position:
               
chr29:28775261-28775716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
75, 12
               

               
Conread position:
               
158-370
               

               
Cow position:
               
chr29:32655890-32656101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
157, 12
               

               
Conread position:
               
158-571
               

               
Cow position:
               
chr29:38581197-38580772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 182
               

               
Conread position:
               
159-446
               

               
Cow position:
               
chr29:20770548-20770258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
63, 99
               

               
Conread position:
               
159-471
               

               
Cow position:
               
chr29:8004719-8005034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
77, 38
               

               
Conread position:
               
159-481
               

               
Cow position:
               
chr29:8862297-8862596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
159-604
               

               
Cow position:
               
chr29:19949509-19949073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
210, 170
               

               
Conread position:
               
159-609
               

               
Cow position:
               
chr29:22162060-22162492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 35
               

               
Conread position:
               
159-624
               

               
Cow position:
               
chr29:29769150-29769602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 73
               

               
Conread position:
               
159-624
               

               
Cow position:
               
chr29:32963726-32963298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
380, 11
               

               
Conread position:
               
159-626
               

               
Cow position:
               
chr29:732814-732364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
240, 53
               

               
Conread position:
               
159-626
               

               
Cow position:
               
chr29:24624444-24623983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
73, 11
               

               
Conread position:
               
159-626
               

               
Cow position:
               
chr29:35501461-35501906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 45
               

               
Conread position:
               
159-630
               

               
Cow position:
               
chr29:39111120-39111570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
212, 71
               

               
Conread position:
               
159-635
               

               
Cow position:
               
chr29:23698175-23697710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 35
               

               
Conread position:
               
159-637
               

               
Cow position:
               
chr29:9709897-9709430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 97
               

               
Conread position:
               
159-653
               

               
Cow position:
               
chr29:12680362-12679874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
73, 241
               

               
Conread position:
               
160-370
               

               
Cow position:
               
chr29:22729768-22729559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
71, 97
               

               
Conread position:
               
160-370
               

               
Cow position:
               
chr29:36781107-36781313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
160-488
               

               
Cow position:
               
chr29:15947372-15947043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
72, 259
               

               
Conread position:
               
160-579
               

               
Cow position:
               
chr29:1022497-1022078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
59, 105
               

               
Conread position:
               
160-626
               

               
Cow position:
               
chr29:16657893-16657433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 13
               

               
Conread position:
               
160-630
               

               
Cow position:
               
chr29:14501798-14501332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
72, 126
               

               
Conread position:
               
160-630
               

               
Cow position:
               
chr29:34359621-34360056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 87
               

               
Conread position:
               
160-631
               

               
Cow position:
               
chr29:42363815-42364277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
10, 99
               

               
Conread position:
               
160-634
               

               
Cow position:
               
chr29:29057382-29056917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 176
               

               
Conread position:
               
161-355
               

               
Cow position:
               
chr29:10203971-10203778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
161-381
               

               
Cow position:
               
chr29:31651604-31651391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
159, 70
               

               
Conread position:
               
161-389
               

               
Cow position:
               
chr29:5789217-5789000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
226, 64
               

               
Conread position:
               
161-389
               

               
Cow position:
               
chr29:31934578-31934351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
161-390
               

               
Cow position:
               
chr29:16279179-16278959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
161-433
               

               
Cow position:
               
chr29:23825864-23825596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
149, 70
               

               
Conread position:
               
161-457
               

               
Cow position:
               
chr29:22721555-22721277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
203, 65
               

               
Conread position:
               
161-463
               

               
Cow position:
               
chr29:9310805-9310515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
50, 233
               

               
Conread position:
               
161-474
               

               
Cow position:
               
chr29:7310865-7310575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
161-479
               

               
Cow position:
               
chr29:13028652-13028320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
71, 181
               

               
Conread position:
               
161-492
               

               
Cow position:
               
chr29:12025277-12025603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 32
               

               
Conread position:
               
161-533
               

               
Cow position:
               
chr29:4085498-4085151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
315, 67
               

               
Conread position:
               
161-547
               

               
Cow position:
               
chr29:43099547-43099925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
229, 97
               

               
Conread position:
               
161-560
               

               
Cow position:
               
chr29:30188129-30188533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
105, 93
               

               
Conread position:
               
161-616
               

               
Cow position:
               
chr29:34773547-34773975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
56, 98
               

               
Conread position:
               
161-625
               

               
Cow position:
               
chr29:11071504-11071961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
72, 40
               

               
Conread position:
               
161-635
               

               
Cow position:
               
chr29:19762465-19762005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
71, 49
               

               
Conread position:
               
161-636
               

               
Cow position:
               
chr29:2644119-2644573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
197, 67
               

               
Conread position:
               
161-644
               

               
Cow position:
               
chr29:2623278-2623756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
100, 173
               

               
Conread position:
               
162-346
               

               
Cow position:
               
chr29:37293228-37293054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
162-389
               

               
Cow position:
               
chr29:4070821-4070600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
162-420
               

               
Cow position:
               
chr29:17236623-17236376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
206, 69
               

               
Conread position:
               
162-427
               

               
Cow position:
               
chr29:18449937-18450201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
69, 115
               

               
Conread position:
               
162-441
               

               
Cow position:
               
chr29:22518920-22519210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
35, 132
               

               
Conread position:
               
162-460
               

               
Cow position:
               
chr29:43183116-43183407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
9, 51
               

               
Conread position:
               
162-568
               

               
Cow position:
               
chr29:6337851-6337462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
238, 14
               

               
Conread position:
               
162-568
               

               
Cow position:
               
chr29:11434313-11433922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 44
               

               
Conread position:
               
162-602
               

               
Cow position:
               
chr29:34744430-34744851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
70, 37
               

               
Conread position:
               
162-616
               

               
Cow position:
               
chr29:10653523-10653100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
236, 69
               

               
Conread position:
               
162-626
               

               
Cow position:
               
chr29:40583986-40583539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
70, 31
               

               
Conread position:
               
162-631
               

               
Cow position:
               
chr29:19428851-19428405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 17
               

               
Conread position:
               
163-371
               

               
Cow position:
               
chr29:19176715-19176923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
109, 64
               

               
Conread position:
               
163-389
               

               
Cow position:
               
chr29:26540340-26540568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
163-424
               

               
Cow position:
               
chr29:42630317-42630058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
163-430
               

               
Cow position:
               
chr29:16290923-16290655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
99, 57
               

               
Conread position:
               
163-449
               

               
Cow position:
               
chr29:28994056-28993772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 69
               

               
Conread position:
               
163-483
               

               
Cow position:
               
chr29:3826166-3825851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
237, 34
               

               
Conread position:
               
163-547
               

               
Cow position:
               
chr29:25092304-25091929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
69, 94
               

               
Conread position:
               
163-550
               

               
Cow position:
               
chr29:29475053-29475438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
122, 231
               

               
Conread position:
               
163-550
               

               
Cow position:
               
chr29:37618508-37618123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
68, 118
               

               
Conread position:
               
163-568
               

               
Cow position:
               
chr29:35677341-35677745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
65, 326
               

               
Conread position:
               
163-593
               

               
Cow position:
               
chr29:3711576-3711161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
69, 126
               

               
Conread position:
               
163-603
               

               
Cow position:
               
chr29:35458569-35459006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
68, 155
               

               
Conread position:
               
163-624
               

               
Cow position:
               
chr29:27009626-27009162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
30, 211
               

               
Conread position:
               
163-626
               

               
Cow position:
               
chr29:23874662-23874198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
72, 278
               

               
Conread position:
               
163-626
               

               
Cow position:
               
chr29:26017301-26017769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 14
               

               
Conread position:
               
163-627
               

               
Cow position:
               
chr29:34297371-34297824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
208, 92
               

               
Conread position:
               
163-630
               

               
Cow position:
               
chr29:1933370-1933820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
69, 47
               

               
Conread position:
               
163-630
               

               
Cow position:
               
chr29:35292286-35291837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 66
               

               
Conread position:
               
163-633
               

               
Cow position:
               
chr29:16609950-16609473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 344
               

               
Conread position:
               
163-644
               

               
Cow position:
               
chr29:41531051-41530574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 115
               

               
Conread position:
               
164-388
               

               
Cow position:
               
chr29:24187864-24188092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
164-447
               

               
Cow position:
               
chr29:32894456-32894182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
164-630
               

               
Cow position:
               
chr29:31929185-31928717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 62
               

               
Conread position:
               
166-381
               

               
Cow position:
               
chr29:3293140-3292928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
167-626
               

               
Cow position:
               
chr29:24952883-24952428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 133
               

               
Conread position:
               
168-605
               

               
Cow position:
               
chr29:16309916-16309513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 31
               

               
Conread position:
               
169-389
               

               
Cow position:
               
chr29:396596-396385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
169-440
               

               
Cow position:
               
chr29:19250537-19250269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
112, 154
               

               
Conread position:
               
169-470
               

               
Cow position:
               
chr29:1008014-1007707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
12, 115
               

               
Conread position:
               
169-471
               

               
Cow position:
               
chr29:5046847-5046542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
56, 24
               

               
Conread position:
               
169-479
               

               
Cow position:
               
chr29:3685327-3685631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
63, 94
               

               
Conread position:
               
169-490
               

               
Cow position:
               
chr29:2056254-2055927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
27, 63
               

               
Conread position:
               
169-505
               

               
Cow position:
               
chr29:40959649-40959994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
28, 41
               

               
Conread position:
               
169-535
               

               
Cow position:
               
chr29:5408948-5409317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
62, 103
               

               
Conread position:
               
169-543
               

               
Cow position:
               
chr29:5520290-5520694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
169-559
               

               
Cow position:
               
chr29:35442287-35442652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
218, 55
               

               
Conread position:
               
169-568
               

               
Cow position:
               
chr29:22777987-22778382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 24
               

               
Conread position:
               
169-602
               

               
Cow position:
               
chr29:22613615-22613198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
226, 30
               

               
Conread position:
               
169-623
               

               
Cow position:
               
chr29:10839133-10838695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
113, 105
               

               
Conread position:
               
169-624
               

               
Cow position:
               
chr29:17222610-17222152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 51
               

               
Conread position:
               
169-626
               

               
Cow position:
               
chr29:706781-707203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
232, 24
               

               
Conread position:
               
169-626
               

               
Cow position:
               
chr29:17110147-17109712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
308, 24
               

               
Conread position:
               
169-626
               

               
Cow position:
               
chr29:22068547-22069005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
106, 86
               

               
Conread position:
               
169-626
               

               
Cow position:
               
chr29:24603959-24604406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 14
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr29:2744075-2744534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 107
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr29:4121050-4120584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 346
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr29:6636272-6635842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
41, 34
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr29:28195339-28195781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 62
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr29:34745467-34745916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 66
               

               
Conread position:
               
169-631
               

               
Cow position:
               
chr29:21196458-21196913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
185, 87
               

               
Conread position:
               
169-634
               

               
Cow position:
               
chr29:40891513-40891968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
82, 27
               

               
Conread position:
               
169-636
               

               
Cow position:
               
chr29:36531060-36530595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 259
               

               
Conread position:
               
170-414
               

               
Cow position:
               
chr29:11696885-11696660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
170-452
               

               
Cow position:
               
chr29:21666279-21665996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
62, 203
               

               
Conread position:
               
170-566
               

               
Cow position:
               
chr29:31489517-31489121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
80, 242
               

               
Conread position:
               
170-569
               

               
Cow position:
               
chr29:30441132-30440724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
71, 122
               

               
Conread position:
               
170-618
               

               
Cow position:
               
chr29:11916014-11915567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 158
               

               
Conread position:
               
170-638
               

               
Cow position:
               
chr29:7955795-7956254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
61, 128
               

               
Conread position:
               
170-646
               

               
Cow position:
               
chr29:40117758-40117297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
235, 61
               

               
Conread position:
               
171-424
               

               
Cow position:
               
chr29:1011401-1011637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
60, 100
               

               
Conread position:
               
171-605
               

               
Cow position:
               
chr29:4520523-4520098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 7
               

               
Conread position:
               
171-630
               

               
Cow position:
               
chr29:32799511-32799965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 167
               

               
Conread position:
               
174-659
               

               
Cow position:
               
chr29:32655254-32655716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 42
               

               
Conread position:
               
176-387
               

               
Cow position:
               
chr29:4423263-4423465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
177-545
               

               
Cow position:
               
chr29:24293056-24292689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
55, 38
               

               
Conread position:
               
178-618
               

               
Cow position:
               
chr29:1395757-1395356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 24
               

               
Conread position:
               
179-420
               

               
Cow position:
               
chr29:43544421-43544661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
211, 174
               

               
Conread position:
               
179-607
               

               
Cow position:
               
chr29:25475117-25474668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
52, 348
               

               
Conread position:
               
182-366
               

               
Cow position:
               
chr29:2135347-2135522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
183-630
               

               
Cow position:
               
chr29:38582150-38581707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
48, 78
               

               
Conread position:
               
199-630
               

               
Cow position:
               
chr29:8669519-8669093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
42, 96
               

               
Conread position:
               
201-554
               

               
Cow position:
               
chr29:4334879-4334541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
42, 102
               

               
Conread position:
               
210-630
               

               
Cow position:
               
chr29:1325591-1325179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 121
               

               
Conread position:
               
232-597
               

               
Cow position:
               
chr29:1229736-1229379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
158, 140
               

               
Conread position:
               
232-626
               

               
Cow position:
               
chr29:39567810-39567430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 32
               

               
Conread position:
               
235-493
               

               
Cow position:
               
chr29:26416477-26416227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
160, 95
               

               
Conread position:
               
235-630
               

               
Cow position:
               
chr29:22936397-22936019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
54, 110
               

               
Conread position:
               
235-638
               

               
Cow position:
               
chr29:6217419-6217818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
75, 161
               

               
Conread position:
               
240-589
               

               
Cow position:
               
chr29:463531-463875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
49, 34
               

               
Conread position:
               
240-637
               

               
Cow position:
               
chr29:26263956-26263586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
137, 27
               

               
Conread position:
               
241-600
               

               
Cow position:
               
chr29:43496160-43495827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
26, 90
               

               
Conread position:
               
244-628
               

               
Cow position:
               
chr29:9912292-9911917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 30
               

               
Conread position:
               
245-449
               

               
Cow position:
               
chr29:18085688-18085482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
127, 148
               

               
Conread position:
               
245-449
               

               
Cow position:
               
chr29:31814055-31813860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
22, 112
               

               
Conread position:
               
245-493
               

               
Cow position:
               
chr29:11397811-11398056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
245-557
               

               
Cow position:
               
chr29:11053744-11054059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
236, 88
               

               
Conread position:
               
245-604
               

               
Cow position:
               
chr29:11705228-11704886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
294, 75
               

               
Conread position:
               
245-630
               

               
Cow position:
               
chr29:6293364-6293729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
229, 19
               

               
Conread position:
               
245-636
               

               
Cow position:
               
chr29:86896-87285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 19
               

               
Conread position:
               
246-367
               

               
Cow position:
               
chr29:19244344-19244465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
246-630
               

               
Cow position:
               
chr29:36217227-36216856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
144, 84
               

               
Conread position:
               
247-434
               

               
Cow position:
               
chr29:5210605-5210413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
147, 74
               

               
Conread position:
               
247-440
               

               
Cow position:
               
chr29:13867096-13867291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
247-450
               

               
Cow position:
               
chr29:13373415-13373210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
92, 148
               

               
Conread position:
               
247-470
               

               
Cow position:
               
chr29:847528-847750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
68, 95
               

               
Conread position:
               
247-492
               

               
Cow position:
               
chr29:29176503-29176747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
154, 86
               

               
Conread position:
               
247-493
               

               
Cow position:
               
chr29:42771749-42771518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
227, 49
               

               
Conread position:
               
247-501
               

               
Cow position:
               
chr29:11647208-11646953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
145, 120
               

               
Conread position:
               
247-504
               

               
Cow position:
               
chr29:40994777-40995029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
247-568
               

               
Cow position:
               
chr29:39329489-39329797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
230, 142
               

               
Conread position:
               
247-585
               

               
Cow position:
               
chr29:40298906-40299230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
227, 148
               

               
Conread position:
               
247-587
               

               
Cow position:
               
chr29:40097076-40096737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
111, 75
               

               
Conread position:
               
247-604
               

               
Cow position:
               
chr29:13639252-13639603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 175
               

               
Conread position:
               
247-604
               

               
Cow position:
               
chr29:44378305-44378655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
160, 69
               

               
Conread position:
               
247-626
               

               
Cow position:
               
chr29:6844518-6844887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 115
               

               
Conread position:
               
247-630
               

               
Cow position:
               
chr29:25333347-25333715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
160, 76
               

               
Conread position:
               
247-644
               

               
Cow position:
               
chr29:12783852-12784232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 9
               

               
Conread position:
               
247-644
               

               
Cow position:
               
chr29:22175795-22175417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
247-646
               

               
Cow position:
               
chr29:19339115-19338701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 135
               

               
Conread position:
               
248-484
               

               
Cow position:
               
chr29:14758751-14758987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
144, 11
               

               
Conread position:
               
248-508
               

               
Cow position:
               
chr29:7663157-7663419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
131, 45
               

               
Conread position:
               
248-629
               

               
Cow position:
               
chr29:7665903-7666290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
85, 32
               

               
Conread position:
               
248-630
               

               
Cow position:
               
chr29:15940524-15940900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 19
               

               
Conread position:
               
249-428
               

               
Cow position:
               
chr29:30350819-30351002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
249-450
               

               
Cow position:
               
chr29:11677350-11677547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
149, 75
               

               
Conread position:
               
249-479
               

               
Cow position:
               
chr29:4444830-4444597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
17, 21
               

               
Conread position:
               
249-568
               

               
Cow position:
               
chr29:26653932-26654241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
89, 142
               

               
Conread position:
               
249-604
               

               
Cow position:
               
chr29:37960864-37961214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 61
               

               
Conread position:
               
249-616
               

               
Cow position:
               
chr29:22895839-22895468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
136, 204
               

               
Conread position:
               
249-616
               

               
Cow position:
               
chr29:26985339-26984980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
228, 169
               

               
Conread position:
               
249-622
               

               
Cow position:
               
chr29:13554249-13553878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
32, 55
               

               
Conread position:
               
249-623
               

               
Cow position:
               
chr29:356433-356071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 193
               

               
Conread position:
               
249-624
               

               
Cow position:
               
chr29:2274728-2275089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
133, 50
               

               
Conread position:
               
249-624
               

               
Cow position:
               
chr29:6015238-6014847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
92, 118
               

               
Conread position:
               
249-624
               

               
Cow position:
               
chr29:40337430-40337780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
223, 37
               

               
Conread position:
               
249-626
               

               
Cow position:
               
chr29:4194016-4194379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
275, 81
               

               
Conread position:
               
249-626
               

               
Cow position:
               
chr29:26299081-26298724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
148, 37
               

               
Conread position:
               
249-628
               

               
Cow position:
               
chr29:18021571-18021935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 106
               

               
Conread position:
               
249-630
               

               
Cow position:
               
chr29:13127008-13127370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
68, 249
               

               
Conread position:
               
249-630
               

               
Cow position:
               
chr29:17607527-17607154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
126, 9
               

               
Conread position:
               
249-630
               

               
Cow position:
               
chr29:18073051-18072667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
144, 50
               

               
Conread position:
               
249-633
               

               
Cow position:
               
chr29:4367838-4367456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 257
               

               
Conread position:
               
249-634
               

               
Cow position:
               
chr29:12762067-12761701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
141, 44
               

               
Conread position:
               
249-653
               

               
Cow position:
               
chr29:25088855-25088469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 75
               

               
Conread position:
               
249-658
               

               
Cow position:
               
chr29:9512372-9511942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
124, 359
               

               
Conread position:
               
249-658
               

               
Cow position:
               
chr29:19509058-19508671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
35, 24
               

               
Conread position:
               
250-367
               

               
Cow position:
               
chr29:27688627-27688744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
250-436
               

               
Cow position:
               
chr29:7103669-7103480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
250-449
               

               
Cow position:
               
chr29:693898-694089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
250-487
               

               
Cow position:
               
chr29:29559609-29559845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
132, 36
               

               
Conread position:
               
250-603
               

               
Cow position:
               
chr29:6286050-6286393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
228, 142
               

               
Conread position:
               
250-604
               

               
Cow position:
               
chr29:27858898-27858555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
145, 81
               

               
Conread position:
               
250-611
               

               
Cow position:
               
chr29:20903179-20903531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
147, 110
               

               
Conread position:
               
250-629
               

               
Cow position:
               
chr29:2262884-2263287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
143, 80
               

               
Conread position:
               
250-630
               

               
Cow position:
               
chr29:5947695-5948049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
250-630
               

               
Cow position:
               
chr29:12451485-12451110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
42, 47
               

               
Conread position:
               
250-637
               

               
Cow position:
               
chr29:13372774-13372396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
226, 19
               

               
Conread position:
               
250-644
               

               
Cow position:
               
chr29:11005846-11005431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
151, 369
               

               
Conread position:
               
250-644
               

               
Cow position:
               
chr29:16195951-16195576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
224, 88
               

               
Conread position:
               
250-644
               

               
Cow position:
               
chr29:18695362-18694981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
129, 17
               

               
Conread position:
               
250-652
               

               
Cow position:
               
chr29:650385-649994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 29
               

               
Conread position:
               
251-489
               

               
Cow position:
               
chr29:34358868-34359109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
134, 187
               

               
Conread position:
               
251-535
               

               
Cow position:
               
chr29:23243768-23244050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
31, 23
               

               
Conread position:
               
251-559
               

               
Cow position:
               
chr29:32210961-32211251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
226, 72
               

               
Conread position:
               
251-616
               

               
Cow position:
               
chr29:17409445-17409082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 230
               

               
Conread position:
               
251-626
               

               
Cow position:
               
chr29:749797-750156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
138, 48
               

               
Conread position:
               
255-458
               

               
Cow position:
               
chr29:27873707-27873507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
120, 143
               

               
Conread position:
               
255-479
               

               
Cow position:
               
chr29:42886649-42886438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
255-604
               

               
Cow position:
               
chr29:7966352-7966010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
116, 186
               

               
Conread position:
               
255-607
               

               
Cow position:
               
chr29:11787901-11787553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
143, 44
               

               
Conread position:
               
255-630
               

               
Cow position:
               
chr29:45005523-45005878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
117, 83
               

               
Conread position:
               
256-463
               

               
Cow position:
               
chr29:24578968-24578756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
256-630
               

               
Cow position:
               
chr29:7407799-7408151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
215, 43
               

               
Conread position:
               
256-630
               

               
Cow position:
               
chr29:12310113-12309735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
174, 133
               

               
Conread position:
               
256-631
               

               
Cow position:
               
chr29:19907460-19907093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
26, 11
               

               
Conread position:
               
257-568
               

               
Cow position:
               
chr29:709029-709323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 122
               

               
Conread position:
               
257-601
               

               
Cow position:
               
chr29:40853032-40852699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
220, 143
               

               
Conread position:
               
258-479
               

               
Cow position:
               
chr29:12625873-12626097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
258-574
               

               
Cow position:
               
chr29:17154881-17154569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
128, 75
               

               
Conread position:
               
258-631
               

               
Cow position:
               
chr29:26615614-26615992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
35, 248
               

               
Conread position:
               
258-636
               

               
Cow position:
               
chr29:13634195-13634568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
84, 41
               

               
Conread position:
               
258-644
               

               
Cow position:
               
chr29:9937980-9938343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
47, 19
               

               
Conread position:
               
259-485
               

               
Cow position:
               
chr29:19821385-19821162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
217, 69
               

               
Conread position:
               
259-528
               

               
Cow position:
               
chr29:29512038-29512303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
138, 207
               

               
Conread position:
               
259-626
               

               
Cow position:
               
chr29:32290711-32290344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
141, 242
               

               
Conread position:
               
259-644
               

               
Cow position:
               
chr29:109790-109435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
14, 72
               

               
Conread position:
               
261-539
               

               
Cow position:
               
chr29:24252335-24252064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
139, 70
               

               
Conread position:
               
261-547
               

               
Cow position:
               
chr29:10235034-10235309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
110, 69
               

               
Conread position:
               
264-605
               

               
Cow position:
               
chr29:23983858-23984200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
107, 232
               

               
Conread position:
               
264-640
               

               
Cow position:
               
chr29:2984987-2984615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 59
               

               
Conread position:
               
264-647
               

               
Cow position:
               
chr29:28868740-28868353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 166
               

               
Conread position:
               
265-567
               

               
Cow position:
               
chr29:3100171-3100461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
213, 125
               

               
Conread position:
               
269-626
               

               
Cow position:
               
chr29:32521962-32521611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
125, 34
               

               
Conread position:
               
272-568
               

               
Cow position:
               
chr29:41365198-41364909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
44, 36
               

               
Conread position:
               
272-598
               

               
Cow position:
               
chr29:868864-868542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 124
               

               
Conread position:
               
272-602
               

               
Cow position:
               
chr29:23844927-23844597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
117, 227
               

               
Conread position:
               
272-630
               

               
Cow position:
               
chr29:9638231-9638574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
116, 131
               

               
Conread position:
               
273-429
               

               
Cow position:
               
chr29:36830446-36830291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
273-567
               

               
Cow position:
               
chr29:26270155-26269868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
117, 41
               

               
Conread position:
               
273-626
               

               
Cow position:
               
chr29:19389566-19389228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
206, 117
               

               
Conread position:
               
273-630
               

               
Cow position:
               
chr29:29975125-29974779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
204, 15
               

               
Conread position:
               
273-634
               

               
Cow position:
               
chr29:4624911-4625259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
124, 57
               

               
Conread position:
               
273-636
               

               
Cow position:
               
chr29:15738252-15738612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
117, 215
               

               
Conread position:
               
273-638
               

               
Cow position:
               
chr29:20673722-20674076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
245, 117
               

               
Conread position:
               
273-659
               

               
Cow position:
               
chr29:21933033-21933407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
251, 98
               

               
Conread position:
               
275-542
               

               
Cow position:
               
chr29:29942641-29942909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
121, 227
               

               
Conread position:
               
275-630
               

               
Cow position:
               
chr29:26130860-26130521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 116
               

               
Conread position:
               
279-613
               

               
Cow position:
               
chr29:26987011-26986700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
120, 32
               

               
Conread position:
               
280-431
               

               
Cow position:
               
chr29:40633724-40633576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
280-490
               

               
Cow position:
               
chr29:289892-290100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
73, 19
               

               
Conread position:
               
280-503
               

               
Cow position:
               
chr29:4051910-4052128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
114, 22
               

               
Conread position:
               
280-630
               

               
Cow position:
               
chr29:5098685-5099024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
121, 129
               

               
Conread position:
               
280-634
               

               
Cow position:
               
chr29:22714642-22714994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
115, 77
               

               
Conread position:
               
281-535
               

               
Cow position:
               
chr29:44682024-44682267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
196, 94
               

               
Conread position:
               
281-568
               

               
Cow position:
               
chr29:43009004-43009285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
196, 104
               

               
Conread position:
               
281-619
               

               
Cow position:
               
chr29:11562693-11562363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
196, 138
               

               
Conread position:
               
281-630
               

               
Cow position:
               
chr29:465319-465664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
258, 109
               

               
Conread position:
               
282-629
               

               
Cow position:
               
chr29:4480094-4480433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
119, 52
               

               
Conread position:
               
283-493
               

               
Cow position:
               
chr29:27329971-27329759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
283-616
               

               
Cow position:
               
chr29:17668565-17668247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
117, 47
               

               
Conread position:
               
283-636
               

               
Cow position:
               
chr29:17034-17373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
107, 20
               

               
Conread position:
               
286-493
               

               
Cow position:
               
chr29:29314577-29314788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
286-603
               

               
Cow position:
               
chr29:24103466-24103784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
93, 50
               

               
Conread position:
               
286-630
               

               
Cow position:
               
chr29:40166319-40165980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
85, 143
               

               
Conread position:
               
286-630
               

               
Cow position:
               
chr29:41811515-41811839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
117, 44
               

               
Conread position:
               
293-652
               

               
Cow position:
               
chr29:9139489-9139125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 41
               

               
Conread position:
               
294-567
               

               
Cow position:
               
chr29:9718705-9718972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
100, 38
               

               
Conread position:
               
294-602
               

               
Cow position:
               
chr29:19792209-19792514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
175, 96
               

               
Conread position:
               
296-604
               

               
Cow position:
               
chr29:18735574-18735879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
94, 196
               

               
Conread position:
               
298-551
               

               
Cow position:
               
chr29:25923897-25924155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
71, 203
               

               
Conread position:
               
299-475
               

               
Cow position:
               
chr29:23389495-23389670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
100, 30
               

               
Conread position:
               
299-477
               

               
Cow position:
               
chr29:29795320-29795501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
299-479
               

               
Cow position:
               
chr29:21941663-21941481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
299-558
               

               
Cow position:
               
chr29:44988728-44988972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
168, 73
               

               
Conread position:
               
299-602
               

               
Cow position:
               
chr29:14615201-14615492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
77, 86
               

               
Conread position:
               
299-620
               

               
Cow position:
               
chr29:1556993-1556680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
96, 74
               

               
Conread position:
               
299-629
               

               
Cow position:
               
chr29:19253767-19254083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
300-630
               

               
Cow position:
               
chr29:2071510-2071830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
42, 198
               

               
Conread position:
               
300-630
               

               
Cow position:
               
chr29:13615588-13615905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
174, 85
               

               
Conread position:
               
303-449
               

               
Cow position:
               
chr29:13487009-13486861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
304-490
               

               
Cow position:
               
chr29:17301591-17301399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
311-607
               

               
Cow position:
               
chr29:24119689-24119976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
5, 84
               

               
Conread position:
               
311-613
               

               
Cow position:
               
chr29:36183331-36183031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 83
               

               
Conread position:
               
311-616
               

               
Cow position:
               
chr29:41747498-41747193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
79, 196
               

               
Conread position:
               
314-493
               

               
Cow position:
               
chr29:10018626-10018441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
76, 139
               

               
Conread position:
               
314-631
               

               
Cow position:
               
chr29:31926242-31926553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 202
               

               
Conread position:
               
315-607
               

               
Cow position:
               
chr29:3502617-3502317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
75, 184
               

               
Conread position:
               
316-640
               

               
Cow position:
               
chr29:21534627-21534950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
63, 176
               

               
Conread position:
               
317-646
               

               
Cow position:
               
chr29:37785129-37785457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
83, 6
               

               
Conread position:
               
320-568
               

               
Cow position:
               
chr29:14484496-14484746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
71, 185
               

               
Conread position:
               
320-626
               

               
Cow position:
               
chr29:16757096-16756797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
323-630
               

               
Cow position:
               
chr29:12004724-12005026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
145, 75
               

               
Conread position:
               
326-644
               

               
Cow position:
               
chr29:41182677-41182991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
73, 7
               

               
Conread position:
               
331-504
               

               
Cow position:
               
chr29:43956920-43956748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
147, 61
               

               
Conread position:
               
332-630
               

               
Cow position:
               
chr29:28884110-28883818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
148, 19
               

               
Conread position:
               
332-633
               

               
Cow position:
               
chr29:18211965-18212247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
140, 59
               

               
Conread position:
               
332-636
               

               
Cow position:
               
chr29:6926038-6925754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
144, 58
               

               
Conread position:
               
332-641
               

               
Cow position:
               
chr29:29558404-29558715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
142, 28
               

               
Conread position:
               
332-644
               

               
Cow position:
               
chr29:17965993-17965681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
47, 109
               

               
Conread position:
               
333-598
               

               
Cow position:
               
chr29:39643204-39642946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
67, 99
               

               
Conread position:
               
334-646
               

               
Cow position:
               
chr29:9685980-9686279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
143, 18
               

               
Conread position:
               
335-637
               

               
Cow position:
               
chr29:44901677-44901971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
8, 155
               

               
Conread position:
               
336-602
               

               
Cow position:
               
chr29:42886417-42886146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
10, 155
               

               
Conread position:
               
337-646
               

               
Cow position:
               
chr29:94533-94823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
137, 35
               

               
Conread position:
               
338-456
               

               
Cow position:
               
chr29:29295896-29295777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
62, 18
               

               
Conread position:
               
338-479
               

               
Cow position:
               
chr29:11489698-11489840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
62, 18
               

               
Conread position:
               
338-630
               

               
Cow position:
               
chr29:11685030-11684750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
199, 116
               

               
Conread position:
               
338-631
               

               
Cow position:
               
chr29:22957322-22957597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
62, 33
               

               
Conread position:
               
338-634
               

               
Cow position:
               
chr29:12901081-12901374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
55, 122
               

               
Conread position:
               
338-646
               

               
Cow position:
               
chr29:2522588-2522300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
138, 63
               

               
Conread position:
               
339-490
               

               
Cow position:
               
chr29:45384149-45383995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
339-568
               

               
Cow position:
               
chr29:2533081-2532861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
138, 102
               

               
Conread position:
               
339-601
               

               
Cow position:
               
chr29:3503078-3502824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
51, 161
               

               
Conread position:
               
339-644
               

               
Cow position:
               
chr29:32767510-32767797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
130, 50
               

               
Conread position:
               
340-630
               

               
Cow position:
               
chr29:20178113-20178387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
134, 63
               

               
Conread position:
               
341-630
               

               
Cow position:
               
chr29:18748582-18748846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
133, 49
               

               
Conread position:
               
343-535
               

               
Cow position:
               
chr29:19549214-19549396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
5, 40
               

               
Conread position:
               
343-630
               

               
Cow position:
               
chr29:3368443-3368725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
5, 153
               

               
Conread position:
               
344-479
               

               
Cow position:
               
chr29:30227258-30227391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
344-489
               

               
Cow position:
               
chr29:18579993-18580144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
46, 79
               

               
Conread position:
               
344-526
               

               
Cow position:
               
chr29:4495138-4494961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
59, 47
               

               
Conread position:
               
344-624
               

               
Cow position:
               
chr29:35738255-35738526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
123, 47
               

               
Conread position:
               
345-479
               

               
Cow position:
               
chr29:26206880-26206750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
345-633
               

               
Cow position:
               
chr29:24345432-24345729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 6
               

               
Conread position:
               
347-636
               

               
Cow position:
               
chr29:26735043-26734765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
47, 71
               

               
Conread position:
               
349-630
               

               
Cow position:
               
chr29:14112391-14112110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
51, 119
               

               
Conread position:
               
350-535
               

               
Cow position:
               
chr29:456777-456964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 58
               

               
Conread position:
               
350-626
               

               
Cow position:
               
chr29:18338529-18338804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
48, 27
               

               
Conread position:
               
350-629
               

               
Cow position:
               
chr29:7040837-7041096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
126, 41
               

               
Conread position:
               
350-631
               

               
Cow position:
               
chr29:30544857-30545125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
189, 106
               

               
Conread position:
               
354-630
               

               
Cow position:
               
chr29:35281505-35281241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
43, 69
               

               
Conread position:
               
356-491
               

               
Cow position:
               
chr29:40615516-40615654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
356-646
               

               
Cow position:
               
chr29:11696535-11696254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
120, 136
               

               
Conread position:
               
359-652
               

               
Cow position:
               
chr29:6472311-6472022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
116, 20
               

               
Conread position:
               
362-633
               

               
Cow position:
               
chr29:12798920-12798665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
28, 127
               

               
Conread position:
               
362-640
               

               
Cow position:
               
chr29:37292778-37292505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
113, 135
               

               
Conread position:
               
362-644
               

               
Cow position:
               
chr29:23568861-23569149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
60, 155
               

               
Conread position:
               
364-626
               

               
Cow position:
               
chr29:3396105-3395852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
33, 138
               

               
Conread position:
               
384-631
               

               
Cow position:
               
chr29:21000620-21000378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
93, 112
               

               
Conread position:
               
384-644
               

               
Cow position:
               
chr29:21925189-21924934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 115
               

               
Conread position:
               
390-631
               

               
Cow position:
               
chr29:5977142-5977384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
64, 26
               

               
Conread position:
               
393-604
               

               
Cow position:
               
chr29:4066054-4065851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
84, 107
               

               
Conread position:
               
396-645
               

               
Cow position:
               
chr29:295857-296098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
79, 62
               

               
Conread position:
               
396-648
               

               
Cow position:
               
chr29:5919357-5919606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
68, 77
               

               
Conread position:
               
397-624
               

               
Cow position:
               
chr29:44135496-44135717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
59, 111
               

               
Conread position:
               
397-626
               

               
Cow position:
               
chr29:4805196-4804975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
75, 47
               

               
Conread position:
               
398-621
               

               
Cow position:
               
chr29:585238-585029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
78, 33
               

               
Conread position:
               
398-637
               

               
Cow position:
               
chr29:42406635-42406394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
52, 95
               

               
Conread position:
               
398-638
               

               
Cow position:
               
chr29:45650380-45650612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
78, 95
               

               
Conread position:
               
401-626
               

               
Cow position:
               
chr29:8163898-8164121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
67, 81
               

               
Conread position:
               
403-621
               

               
Cow position:
               
chr29:27008074-27007865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
72, 59
               

               
Conread position:
               
403-636
               

               
Cow position:
               
chr29:29477076-29477300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
71, 46
               

               
Conread position:
               
404-638
               

               
Cow position:
               
chr29:36586535-36586310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
135, 91
               

               
Conread position:
               
405-637
               

               
Cow position:
               
chr29:961880-961650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
68, 45
               

               
Conread position:
               
409-626
               

               
Cow position:
               
chr29:35434819-35434612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
130, 41
               

               
Conread position:
               
416-630
               

               
Cow position:
               
chr29:4691733-4691948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
123, 83
               

               
Conread position:
               
418-636
               

               
Cow position:
               
chr29:26519517-26519729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
13, 85
               

               
Conread position:
               
430-622
               

               
Cow position:
               
chr29:17135777-17135597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 70
               

               
Conread position:
               
431-636
               

               
Cow position:
               
chr29:20933642-20933437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
106, 75
               
Show alignments to all cow chromosomes.