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Cow genome map

           
Conread name:
           
Ova1-OVRM10096F06
        

               
Conread position:
               
118-630
               

               
Cow position:
               
chr3:55970732-55970223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 25
               

               
Conread position:
               
121-619
               

               
Cow position:
               
chr3:31309129-31309628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 78
               

               
Conread position:
               
121-644
               

               
Cow position:
               
chr3:54049816-54050317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
128, 31
               

               
Conread position:
               
126-563
               

               
Cow position:
               
chr3:46005802-46006248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 44
               

               
Conread position:
               
128-478
               

               
Cow position:
               
chr3:60389965-60389628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 106
               

               
Conread position:
               
128-497
               

               
Cow position:
               
chr3:18426489-18426858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
103, 42
               

               
Conread position:
               
128-636
               

               
Cow position:
               
chr3:2675242-2674739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 44
               

               
Conread position:
               
128-636
               

               
Cow position:
               
chr3:50768888-50768389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
104, 40
               

               
Conread position:
               
129-493
               

               
Cow position:
               
chr3:77582312-77581953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 17
               

               
Conread position:
               
130-378
               

               
Cow position:
               
chr3:84137606-84137854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
102, 36
               

               
Conread position:
               
130-427
               

               
Cow position:
               
chr3:39873498-39873786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
249, 96
               

               
Conread position:
               
130-630
               

               
Cow position:
               
chr3:48241816-48241337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 15
               

               
Conread position:
               
131-644
               

               
Cow position:
               
chr3:78945613-78946137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 133
               

               
Conread position:
               
132-630
               

               
Cow position:
               
chr3:67929048-67929550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
19, 373
               

               
Conread position:
               
133-630
               

               
Cow position:
               
chr3:72628-72131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 99
               

               
Conread position:
               
133-630
               

               
Cow position:
               
chr3:17221927-17222428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 40
               

               
Conread position:
               
134-470
               

               
Cow position:
               
chr3:72342451-72342113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
115, 34
               

               
Conread position:
               
134-478
               

               
Cow position:
               
chr3:3656720-3656371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
98, 36
               

               
Conread position:
               
134-633
               

               
Cow position:
               
chr3:49460720-49461224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
78, 88
               

               
Conread position:
               
144-322
               

               
Cow position:
               
chr3:24922939-24922764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
21, 85
               

               
Conread position:
               
145-630
               

               
Cow position:
               
chr3:11253968-11254436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
19, 253
               

               
Conread position:
               
148-630
               

               
Cow position:
               
chr3:57754281-57754764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 280
               

               
Conread position:
               
150-631
               

               
Cow position:
               
chr3:25690989-25690503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
82, 20
               

               
Conread position:
               
150-636
               

               
Cow position:
               
chr3:53384091-53384573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
104, 20
               

               
Conread position:
               
152-640
               

               
Cow position:
               
chr3:74601300-74600827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
59, 80
               

               
Conread position:
               
154-419
               

               
Cow position:
               
chr3:41550208-41550459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
238, 61
               

               
Conread position:
               
157-644
               

               
Cow position:
               
chr3:58540333-58540828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 164
               

               
Conread position:
               
158-410
               

               
Cow position:
               
chr3:35075051-35074811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
158-447
               

               
Cow position:
               
chr3:65019671-65019974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
158-493
               

               
Cow position:
               
chr3:76267792-76268137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
158-629
               

               
Cow position:
               
chr3:5374491-5374051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
319, 35
               

               
Conread position:
               
158-631
               

               
Cow position:
               
chr3:55189571-55190035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
92, 10
               

               
Conread position:
               
159-429
               

               
Cow position:
               
chr3:48459148-48459423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
159-434
               

               
Cow position:
               
chr3:75777890-75778157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
163, 10
               

               
Conread position:
               
159-444
               

               
Cow position:
               
chr3:3316625-3316918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 175
               

               
Conread position:
               
159-447
               

               
Cow position:
               
chr3:57704513-57704214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
72, 97
               

               
Conread position:
               
159-450
               

               
Cow position:
               
chr3:19711156-19711446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
73, 24
               

               
Conread position:
               
159-471
               

               
Cow position:
               
chr3:73237363-73237062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
123, 11
               

               
Conread position:
               
159-473
               

               
Cow position:
               
chr3:76156167-76155853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
222, 198
               

               
Conread position:
               
159-479
               

               
Cow position:
               
chr3:3889394-3889707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
12, 71
               

               
Conread position:
               
159-483
               

               
Cow position:
               
chr3:60264541-60264860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
238, 26
               

               
Conread position:
               
159-490
               

               
Cow position:
               
chr3:2648328-2648666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
72, 11
               

               
Conread position:
               
159-490
               

               
Cow position:
               
chr3:24872871-24872563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
235, 11
               

               
Conread position:
               
159-493
               

               
Cow position:
               
chr3:19793076-19792737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 10
               

               
Conread position:
               
159-493
               

               
Cow position:
               
chr3:38035409-38035747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 10
               

               
Conread position:
               
159-497
               

               
Cow position:
               
chr3:73741707-73742014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
321, 60
               

               
Conread position:
               
159-509
               

               
Cow position:
               
chr3:45667164-45667525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
71, 10
               

               
Conread position:
               
159-568
               

               
Cow position:
               
chr3:68145674-68146058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
159-605
               

               
Cow position:
               
chr3:45308107-45307675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
73, 163
               

               
Conread position:
               
159-607
               

               
Cow position:
               
chr3:2506295-2506742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 144
               

               
Conread position:
               
159-607
               

               
Cow position:
               
chr3:75080935-75080505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
11, 58
               

               
Conread position:
               
159-624
               

               
Cow position:
               
chr3:54781813-54782290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
72, 11
               

               
Conread position:
               
159-630
               

               
Cow position:
               
chr3:2518359-2518821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 74
               

               
Conread position:
               
159-630
               

               
Cow position:
               
chr3:8393518-8393062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 10
               

               
Conread position:
               
159-630
               

               
Cow position:
               
chr3:53790363-53790828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
86, 10
               

               
Conread position:
               
159-631
               

               
Cow position:
               
chr3:27274708-27274255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
69, 97
               

               
Conread position:
               
159-631
               

               
Cow position:
               
chr3:40345607-40345115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
83, 159
               

               
Conread position:
               
159-634
               

               
Cow position:
               
chr3:65058881-65058414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 198
               

               
Conread position:
               
159-636
               

               
Cow position:
               
chr3:29891225-29891707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
73, 341
               

               
Conread position:
               
160-370
               

               
Cow position:
               
chr3:28902582-28902790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
160-426
               

               
Cow position:
               
chr3:53904615-53904377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
160-427
               

               
Cow position:
               
chr3:53703767-53704055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
55, 126
               

               
Conread position:
               
160-459
               

               
Cow position:
               
chr3:59605022-59604730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
230, 169
               

               
Conread position:
               
160-466
               

               
Cow position:
               
chr3:56678167-56678481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 25
               

               
Conread position:
               
160-467
               

               
Cow position:
               
chr3:73299245-73298958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
160-484
               

               
Cow position:
               
chr3:48900150-48900483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
69, 178
               

               
Conread position:
               
160-525
               

               
Cow position:
               
chr3:15051772-15052134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 101
               

               
Conread position:
               
160-601
               

               
Cow position:
               
chr3:48579004-48578586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
44, 37
               

               
Conread position:
               
160-626
               

               
Cow position:
               
chr3:38864296-38863833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
154, 12
               

               
Conread position:
               
160-626
               

               
Cow position:
               
chr3:78077370-78076909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
75, 237
               

               
Conread position:
               
160-633
               

               
Cow position:
               
chr3:79093880-79094357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
10, 34
               

               
Conread position:
               
161-314
               

               
Cow position:
               
chr3:27212497-27212346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
161-360
               

               
Cow position:
               
chr3:54557845-54557653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
161-363
               

               
Cow position:
               
chr3:3401721-3401523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
10, 39
               

               
Conread position:
               
161-363
               

               
Cow position:
               
chr3:27246788-27246983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
161-365
               

               
Cow position:
               
chr3:28323389-28323191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
188, 69
               

               
Conread position:
               
161-368
               

               
Cow position:
               
chr3:78071613-78071821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
161-371
               

               
Cow position:
               
chr3:77276286-77276490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
161-381
               

               
Cow position:
               
chr3:26783328-26783550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
78, 149
               

               
Conread position:
               
161-382
               

               
Cow position:
               
chr3:52457088-52456875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
41, 56
               

               
Conread position:
               
161-385
               

               
Cow position:
               
chr3:11229192-11229411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
161-390
               

               
Cow position:
               
chr3:5040124-5040358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
70, 109
               

               
Conread position:
               
161-425
               

               
Cow position:
               
chr3:39247853-39248108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
146, 32
               

               
Conread position:
               
161-425
               

               
Cow position:
               
chr3:40100550-40100795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
161-433
               

               
Cow position:
               
chr3:9074185-9074440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
229, 51
               

               
Conread position:
               
161-467
               

               
Cow position:
               
chr3:54739721-54740017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
229, 42
               

               
Conread position:
               
161-477
               

               
Cow position:
               
chr3:76024682-76024381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 35
               

               
Conread position:
               
161-489
               

               
Cow position:
               
chr3:18687080-18686756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
314, 70
               

               
Conread position:
               
161-490
               

               
Cow position:
               
chr3:59597352-59597031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
313, 70
               

               
Conread position:
               
161-490
               

               
Cow position:
               
chr3:70333790-70334117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
311, 71
               

               
Conread position:
               
161-492
               

               
Cow position:
               
chr3:22221505-22221165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 169
               

               
Conread position:
               
161-493
               

               
Cow position:
               
chr3:71247192-71246869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
247, 32
               

               
Conread position:
               
161-493
               

               
Cow position:
               
chr3:76713133-76713481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
75, 191
               

               
Conread position:
               
161-497
               

               
Cow position:
               
chr3:58764907-58765236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 70
               

               
Conread position:
               
161-509
               

               
Cow position:
               
chr3:54100534-54100895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 247
               

               
Conread position:
               
161-535
               

               
Cow position:
               
chr3:57274237-57273874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
155, 47
               

               
Conread position:
               
161-561
               

               
Cow position:
               
chr3:25477972-25477597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 96
               

               
Conread position:
               
161-568
               

               
Cow position:
               
chr3:2199043-2198660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 52
               

               
Conread position:
               
161-568
               

               
Cow position:
               
chr3:83215448-83215031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
70, 352
               

               
Conread position:
               
161-605
               

               
Cow position:
               
chr3:16333983-16333547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
71, 236
               

               
Conread position:
               
161-605
               

               
Cow position:
               
chr3:59474299-59473853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 94
               

               
Conread position:
               
161-620
               

               
Cow position:
               
chr3:54946304-54945851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 18
               

               
Conread position:
               
161-626
               

               
Cow position:
               
chr3:54435147-54434694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 101
               

               
Conread position:
               
161-626
               

               
Cow position:
               
chr3:75480177-75479732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
227, 153
               

               
Conread position:
               
161-626
               

               
Cow position:
               
chr3:77365113-77365574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 29
               

               
Conread position:
               
161-628
               

               
Cow position:
               
chr3:45882078-45881627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 228
               

               
Conread position:
               
161-629
               

               
Cow position:
               
chr3:3985494-3985047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 15
               

               
Conread position:
               
161-630
               

               
Cow position:
               
chr3:7678844-7678389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
73, 156
               

               
Conread position:
               
161-630
               

               
Cow position:
               
chr3:23168889-23169354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 35
               

               
Conread position:
               
161-630
               

               
Cow position:
               
chr3:52419126-52418681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
63, 180
               

               
Conread position:
               
161-630
               

               
Cow position:
               
chr3:79884301-79884770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
70, 207
               

               
Conread position:
               
161-631
               

               
Cow position:
               
chr3:53150512-53150042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 59
               

               
Conread position:
               
161-633
               

               
Cow position:
               
chr3:73764036-73764480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 69
               

               
Conread position:
               
161-636
               

               
Cow position:
               
chr3:5365844-5365396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
161-636
               

               
Cow position:
               
chr3:13353543-13353070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
65, 181
               

               
Conread position:
               
161-639
               

               
Cow position:
               
chr3:70896218-70895753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 51
               

               
Conread position:
               
161-644
               

               
Cow position:
               
chr3:23471284-23471766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 83
               

               
Conread position:
               
161-644
               

               
Cow position:
               
chr3:59333938-59333477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
20, 48
               

               
Conread position:
               
161-644
               

               
Cow position:
               
chr3:63180044-63179570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 167
               

               
Conread position:
               
161-645
               

               
Cow position:
               
chr3:67744462-67744927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 35
               

               
Conread position:
               
162-389
               

               
Cow position:
               
chr3:69650720-69650939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
89, 31
               

               
Conread position:
               
162-429
               

               
Cow position:
               
chr3:14547177-14546909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
237, 125
               

               
Conread position:
               
162-479
               

               
Cow position:
               
chr3:1517335-1517654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
231, 255
               

               
Conread position:
               
162-482
               

               
Cow position:
               
chr3:47417393-47417711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
92, 170
               

               
Conread position:
               
162-493
               

               
Cow position:
               
chr3:54506884-54506554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
228, 290
               

               
Conread position:
               
162-525
               

               
Cow position:
               
chr3:7662035-7661666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
70, 173
               

               
Conread position:
               
162-626
               

               
Cow position:
               
chr3:48371304-48370851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
81, 107
               

               
Conread position:
               
162-629
               

               
Cow position:
               
chr3:71496951-71497429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 300
               

               
Conread position:
               
162-630
               

               
Cow position:
               
chr3:2036482-2036014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
81, 120
               

               
Conread position:
               
162-630
               

               
Cow position:
               
chr3:26904277-26903831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 68
               

               
Conread position:
               
162-634
               

               
Cow position:
               
chr3:57764391-57763935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 41
               

               
Conread position:
               
162-636
               

               
Cow position:
               
chr3:59451776-59451305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
33, 46
               

               
Conread position:
               
162-644
               

               
Cow position:
               
chr3:73467804-73467321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 31
               

               
Conread position:
               
163-458
               

               
Cow position:
               
chr3:58134507-58134807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
163-462
               

               
Cow position:
               
chr3:48468353-48468059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
68, 232
               

               
Conread position:
               
163-472
               

               
Cow position:
               
chr3:18059881-18059568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
88, 257
               

               
Conread position:
               
163-493
               

               
Cow position:
               
chr3:15153865-15153537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 69
               

               
Conread position:
               
163-493
               

               
Cow position:
               
chr3:68587196-68586866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
17, 70
               

               
Conread position:
               
163-535
               

               
Cow position:
               
chr3:8061297-8060935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 36
               

               
Conread position:
               
163-535
               

               
Cow position:
               
chr3:55318721-55319095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
68, 107
               

               
Conread position:
               
163-550
               

               
Cow position:
               
chr3:55712608-55712221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
227, 57
               

               
Conread position:
               
163-558
               

               
Cow position:
               
chr3:36375361-36375760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
85, 188
               

               
Conread position:
               
163-608
               

               
Cow position:
               
chr3:39661277-39661710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
69, 174
               

               
Conread position:
               
163-616
               

               
Cow position:
               
chr3:51578147-51578591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 117
               

               
Conread position:
               
163-618
               

               
Cow position:
               
chr3:29596572-29596121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
69, 36
               

               
Conread position:
               
163-626
               

               
Cow position:
               
chr3:49482537-49482984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
76, 36
               

               
Conread position:
               
163-630
               

               
Cow position:
               
chr3:210499-210038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 285
               

               
Conread position:
               
163-630
               

               
Cow position:
               
chr3:2025380-2024900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
69, 278
               

               
Conread position:
               
163-630
               

               
Cow position:
               
chr3:17694825-17695290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
91, 179
               

               
Conread position:
               
163-630
               

               
Cow position:
               
chr3:30180260-30179798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 69
               

               
Conread position:
               
163-630
               

               
Cow position:
               
chr3:48851790-48852250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
87, 244
               

               
Conread position:
               
163-633
               

               
Cow position:
               
chr3:13899277-13899740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
117, 129
               

               
Conread position:
               
163-652
               

               
Cow position:
               
chr3:64280761-64281244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 67
               

               
Conread position:
               
163-658
               

               
Cow position:
               
chr3:23945277-23944785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 125
               

               
Conread position:
               
164-444
               

               
Cow position:
               
chr3:22165239-22165523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
67, 143
               

               
Conread position:
               
164-568
               

               
Cow position:
               
chr3:78092335-78092732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
84, 65
               

               
Conread position:
               
164-631
               

               
Cow position:
               
chr3:62998819-62999286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
101, 33
               

               
Conread position:
               
165-650
               

               
Cow position:
               
chr3:64010633-64011115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 120
               

               
Conread position:
               
166-475
               

               
Cow position:
               
chr3:74846551-74846847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 66
               

               
Conread position:
               
166-479
               

               
Cow position:
               
chr3:21014782-21015102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
85, 33
               

               
Conread position:
               
166-480
               

               
Cow position:
               
chr3:17058373-17058681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
166-520
               

               
Cow position:
               
chr3:59035217-59034848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
166-622
               

               
Cow position:
               
chr3:6873097-6873521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
218, 27
               

               
Conread position:
               
166-622
               

               
Cow position:
               
chr3:74500432-74499948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
166-630
               

               
Cow position:
               
chr3:55124111-55124562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 31
               

               
Conread position:
               
168-442
               

               
Cow position:
               
chr3:75238633-75238354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
168-479
               

               
Cow position:
               
chr3:17331891-17331586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
61, 52
               

               
Conread position:
               
168-484
               

               
Cow position:
               
chr3:3883648-3883965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
225, 86
               

               
Conread position:
               
168-493
               

               
Cow position:
               
chr3:19586036-19585706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
81, 159
               

               
Conread position:
               
168-561
               

               
Cow position:
               
chr3:70609797-70609407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
64, 44
               

               
Conread position:
               
168-601
               

               
Cow position:
               
chr3:26970983-26970570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 25
               

               
Conread position:
               
168-625
               

               
Cow position:
               
chr3:46094997-46094558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
10, 30
               

               
Conread position:
               
168-626
               

               
Cow position:
               
chr3:81474175-81473724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
131, 90
               

               
Conread position:
               
168-634
               

               
Cow position:
               
chr3:73395287-73394833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 50
               

               
Conread position:
               
168-636
               

               
Cow position:
               
chr3:60597709-60597263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 63
               

               
Conread position:
               
169-349
               

               
Cow position:
               
chr3:2016603-2016425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
93, 85
               

               
Conread position:
               
169-358
               

               
Cow position:
               
chr3:70402809-70402625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
169-360
               

               
Cow position:
               
chr3:59681736-59681925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
169-363
               

               
Cow position:
               
chr3:75966611-75966805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
107, 163
               

               
Conread position:
               
169-365
               

               
Cow position:
               
chr3:76056117-76056311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
169-382
               

               
Cow position:
               
chr3:15973741-15973523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
169-389
               

               
Cow position:
               
chr3:2638104-2637876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
169-389
               

               
Cow position:
               
chr3:40212864-40213083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
169-389
               

               
Cow position:
               
chr3:56948925-56949138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
169-389
               

               
Cow position:
               
chr3:81234559-81234339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
169-394
               

               
Cow position:
               
chr3:30357680-30357466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
214, 62
               

               
Conread position:
               
169-408
               

               
Cow position:
               
chr3:15160688-15160456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
169-455
               

               
Cow position:
               
chr3:58527548-58527281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
169-458
               

               
Cow position:
               
chr3:15950746-15951031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
33, 61
               

               
Conread position:
               
169-459
               

               
Cow position:
               
chr3:3036770-3037051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
125, 57
               

               
Conread position:
               
169-459
               

               
Cow position:
               
chr3:26992744-26992446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
169-466
               

               
Cow position:
               
chr3:31361594-31361289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
65, 88
               

               
Conread position:
               
169-468
               

               
Cow position:
               
chr3:3649068-3649347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
169-468
               

               
Cow position:
               
chr3:35055805-35056108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
105, 62
               

               
Conread position:
               
169-476
               

               
Cow position:
               
chr3:58317772-58318091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
169-477
               

               
Cow position:
               
chr3:67520005-67520310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
155, 62
               

               
Conread position:
               
169-479
               

               
Cow position:
               
chr3:34871739-34871428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
63, 128
               

               
Conread position:
               
169-479
               

               
Cow position:
               
chr3:78093222-78093524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
169-489
               

               
Cow position:
               
chr3:24468213-24468530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
63, 30
               

               
Conread position:
               
169-490
               

               
Cow position:
               
chr3:55177580-55177905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
227, 63
               

               
Conread position:
               
169-493
               

               
Cow position:
               
chr3:55819920-55819592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
203, 119
               

               
Conread position:
               
169-493
               

               
Cow position:
               
chr3:70761952-70762278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
70, 160
               

               
Conread position:
               
169-497
               

               
Cow position:
               
chr3:48810467-48810796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 230
               

               
Conread position:
               
169-529
               

               
Cow position:
               
chr3:26982220-26981878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
100, 24
               

               
Conread position:
               
169-534
               

               
Cow position:
               
chr3:23408193-23408542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
308, 30
               

               
Conread position:
               
169-558
               

               
Cow position:
               
chr3:35153777-35153395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
223, 62
               

               
Conread position:
               
169-560
               

               
Cow position:
               
chr3:20841708-20842074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
17, 56
               

               
Conread position:
               
169-562
               

               
Cow position:
               
chr3:23105194-23105582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
224, 86
               

               
Conread position:
               
169-564
               

               
Cow position:
               
chr3:67698450-67698061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
63, 220
               

               
Conread position:
               
169-568
               

               
Cow position:
               
chr3:17134502-17134117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
160, 61
               

               
Conread position:
               
169-581
               

               
Cow position:
               
chr3:4319890-4319474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 291
               

               
Conread position:
               
169-589
               

               
Cow position:
               
chr3:12705376-12705802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
226, 63
               

               
Conread position:
               
169-594
               

               
Cow position:
               
chr3:43233674-43233255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
234, 86
               

               
Conread position:
               
169-598
               

               
Cow position:
               
chr3:74234352-74233943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
59, 21
               

               
Conread position:
               
169-603
               

               
Cow position:
               
chr3:80740724-80740315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
226, 24
               

               
Conread position:
               
169-607
               

               
Cow position:
               
chr3:18393229-18393645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
7, 64
               

               
Conread position:
               
169-622
               

               
Cow position:
               
chr3:59649424-59648984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
85, 24
               

               
Conread position:
               
169-624
               

               
Cow position:
               
chr3:9662998-9663465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
62, 92
               

               
Conread position:
               
169-624
               

               
Cow position:
               
chr3:18459366-18459798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 24
               

               
Conread position:
               
169-624
               

               
Cow position:
               
chr3:32585324-32584880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
24, 69
               

               
Conread position:
               
169-626
               

               
Cow position:
               
chr3:17456096-17456549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
93, 118
               

               
Conread position:
               
169-626
               

               
Cow position:
               
chr3:18067301-18066854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
63, 24
               

               
Conread position:
               
169-626
               

               
Cow position:
               
chr3:37041587-37041149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 23
               

               
Conread position:
               
169-626
               

               
Cow position:
               
chr3:65237194-65236745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
370, 235
               

               
Conread position:
               
169-626
               

               
Cow position:
               
chr3:75158526-75158085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 24
               

               
Conread position:
               
169-627
               

               
Cow position:
               
chr3:26066158-26065720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 63
               

               
Conread position:
               
169-628
               

               
Cow position:
               
chr3:14553043-14552596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 61
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr3:10958073-10958512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
226, 24
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr3:14465544-14465988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
203, 24
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr3:16547841-16547392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
49, 226
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr3:20802469-20802913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
221, 62
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr3:31225593-31225165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
370, 23
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr3:48253050-48252613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 62
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr3:48363240-48362799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 62
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr3:71231569-71231122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 156
               

               
Conread position:
               
169-631
               

               
Cow position:
               
chr3:3032580-3032113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 178
               

               
Conread position:
               
169-631
               

               
Cow position:
               
chr3:59610548-59611001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
221, 250
               

               
Conread position:
               
169-631
               

               
Cow position:
               
chr3:65413095-65413560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 342
               

               
Conread position:
               
169-636
               

               
Cow position:
               
chr3:53222183-53221729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
113, 104
               

               
Conread position:
               
169-636
               

               
Cow position:
               
chr3:83491251-83490786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 62
               

               
Conread position:
               
169-639
               

               
Cow position:
               
chr3:68707851-68708294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
63, 92
               

               
Conread position:
               
169-640
               

               
Cow position:
               
chr3:29359993-29360429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
217, 62
               

               
Conread position:
               
169-644
               

               
Cow position:
               
chr3:17936676-17937137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
98, 55
               

               
Conread position:
               
169-644
               

               
Cow position:
               
chr3:39969692-39970170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 332
               

               
Conread position:
               
169-646
               

               
Cow position:
               
chr3:21081209-21081685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 24
               

               
Conread position:
               
169-659
               

               
Cow position:
               
chr3:9641726-9641246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 89
               

               
Conread position:
               
170-425
               

               
Cow position:
               
chr3:23203059-23203322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
61, 127
               

               
Conread position:
               
170-433
               

               
Cow position:
               
chr3:49363277-49363020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
170-437
               

               
Cow position:
               
chr3:10668709-10668979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
61, 163
               

               
Conread position:
               
170-467
               

               
Cow position:
               
chr3:14194020-14194307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
112, 13
               

               
Conread position:
               
170-477
               

               
Cow position:
               
chr3:59040740-59040429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
62, 106
               

               
Conread position:
               
170-489
               

               
Cow position:
               
chr3:27108717-27109052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
62, 34
               

               
Conread position:
               
170-493
               

               
Cow position:
               
chr3:71478762-71478436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
174, 29
               

               
Conread position:
               
170-497
               

               
Cow position:
               
chr3:62046841-62046503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
73, 216
               

               
Conread position:
               
170-517
               

               
Cow position:
               
chr3:15443556-15443903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
62, 180
               

               
Conread position:
               
170-552
               

               
Cow position:
               
chr3:54373687-54374070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
71, 240
               

               
Conread position:
               
170-588
               

               
Cow position:
               
chr3:44932682-44932266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
201, 131
               

               
Conread position:
               
170-605
               

               
Cow position:
               
chr3:83454987-83455411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
251, 20
               

               
Conread position:
               
170-618
               

               
Cow position:
               
chr3:33252722-33253153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
302, 60
               

               
Conread position:
               
170-626
               

               
Cow position:
               
chr3:75570276-75570721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
61, 50
               

               
Conread position:
               
170-630
               

               
Cow position:
               
chr3:2392799-2393250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 168
               

               
Conread position:
               
170-630
               

               
Cow position:
               
chr3:7763828-7763379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
62, 148
               

               
Conread position:
               
170-630
               

               
Cow position:
               
chr3:53592516-53592986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
62, 343
               

               
Conread position:
               
170-635
               

               
Cow position:
               
chr3:54903737-54903284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
101, 186
               

               
Conread position:
               
171-370
               

               
Cow position:
               
chr3:20021437-20021238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
171-492
               

               
Cow position:
               
chr3:23920257-23920584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
70, 131
               

               
Conread position:
               
171-493
               

               
Cow position:
               
chr3:76922504-76922818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 61
               

               
Conread position:
               
171-528
               

               
Cow position:
               
chr3:67930001-67930367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 151
               

               
Conread position:
               
171-544
               

               
Cow position:
               
chr3:38828920-38828564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
301, 45
               

               
Conread position:
               
171-567
               

               
Cow position:
               
chr3:11063532-11063157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 30
               

               
Conread position:
               
171-608
               

               
Cow position:
               
chr3:56476843-56476420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 41
               

               
Conread position:
               
171-616
               

               
Cow position:
               
chr3:13301680-13302126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
65, 53
               

               
Conread position:
               
171-631
               

               
Cow position:
               
chr3:13329623-13330057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 61
               

               
Conread position:
               
172-489
               

               
Cow position:
               
chr3:12978447-12978768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
78, 108
               

               
Conread position:
               
172-630
               

               
Cow position:
               
chr3:51233936-51234379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 59
               

               
Conread position:
               
172-646
               

               
Cow position:
               
chr3:29813394-29812944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 64
               

               
Conread position:
               
173-427
               

               
Cow position:
               
chr3:84250382-84250633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
181, 58
               

               
Conread position:
               
173-624
               

               
Cow position:
               
chr3:65969341-65968877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 340
               

               
Conread position:
               
174-535
               

               
Cow position:
               
chr3:74079472-74079831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
58, 85
               

               
Conread position:
               
175-597
               

               
Cow position:
               
chr3:52651915-52652325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 161
               

               
Conread position:
               
175-604
               

               
Cow position:
               
chr3:71238315-71237899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 80
               

               
Conread position:
               
175-629
               

               
Cow position:
               
chr3:1830408-1830846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
35, 28
               

               
Conread position:
               
175-636
               

               
Cow position:
               
chr3:57577861-57577409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
57, 35
               

               
Conread position:
               
176-487
               

               
Cow position:
               
chr3:79196927-79196610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
56, 227
               

               
Conread position:
               
176-540
               

               
Cow position:
               
chr3:81087472-81087822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
55, 164
               

               
Conread position:
               
176-609
               

               
Cow position:
               
chr3:54881920-54881493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
203, 82
               

               
Conread position:
               
176-630
               

               
Cow position:
               
chr3:59000599-59001029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 54
               

               
Conread position:
               
177-499
               

               
Cow position:
               
chr3:19793427-19793754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
55, 99
               

               
Conread position:
               
177-625
               

               
Cow position:
               
chr3:82055965-82056396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
295, 53
               

               
Conread position:
               
177-626
               

               
Cow position:
               
chr3:53046495-53046937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 159
               

               
Conread position:
               
177-626
               

               
Cow position:
               
chr3:66900564-66901022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 13
               

               
Conread position:
               
177-628
               

               
Cow position:
               
chr3:60933581-60933132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
55, 276
               

               
Conread position:
               
177-629
               

               
Cow position:
               
chr3:53270996-53270543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 337
               

               
Conread position:
               
178-463
               

               
Cow position:
               
chr3:13380116-13380411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
211, 76
               

               
Conread position:
               
178-630
               

               
Cow position:
               
chr3:7566259-7566703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 54
               

               
Conread position:
               
179-631
               

               
Cow position:
               
chr3:70334531-70334988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 297
               

               
Conread position:
               
180-644
               

               
Cow position:
               
chr3:15159192-15158743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
52, 13
               

               
Conread position:
               
182-425
               

               
Cow position:
               
chr3:11640894-11640641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
50, 78
               

               
Conread position:
               
184-418
               

               
Cow position:
               
chr3:27976366-27976606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 75
               

               
Conread position:
               
186-605
               

               
Cow position:
               
chr3:52608335-52607924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
46, 71
               

               
Conread position:
               
187-627
               

               
Cow position:
               
chr3:49337871-49337453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
80, 42
               

               
Conread position:
               
193-625
               

               
Cow position:
               
chr3:44102114-44101702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
39, 65
               

               
Conread position:
               
193-633
               

               
Cow position:
               
chr3:55010024-55010442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
197, 38
               

               
Conread position:
               
205-634
               

               
Cow position:
               
chr3:59692021-59691616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
13, 50
               

               
Conread position:
               
206-631
               

               
Cow position:
               
chr3:77271144-77271553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 115
               

               
Conread position:
               
206-633
               

               
Cow position:
               
chr3:73709181-73708767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 60
               

               
Conread position:
               
210-626
               

               
Cow position:
               
chr3:38691276-38691685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 192
               

               
Conread position:
               
212-633
               

               
Cow position:
               
chr3:80565092-80564675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 43
               

               
Conread position:
               
214-630
               

               
Cow position:
               
chr3:36671865-36672289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
20, 105
               

               
Conread position:
               
220-624
               

               
Cow position:
               
chr3:82461296-82460905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 34
               

               
Conread position:
               
227-493
               

               
Cow position:
               
chr3:59101942-59101673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
14, 106
               

               
Conread position:
               
231-652
               

               
Cow position:
               
chr3:58350680-58350282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
217, 68
               

               
Conread position:
               
232-368
               

               
Cow position:
               
chr3:11705359-11705222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
232-646
               

               
Cow position:
               
chr3:19006767-19006367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
32, 121
               

               
Conread position:
               
232-650
               

               
Cow position:
               
chr3:83815680-83816097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
20, 70
               

               
Conread position:
               
233-478
               

               
Cow position:
               
chr3:81359005-81359244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
160, 42
               

               
Conread position:
               
233-630
               

               
Cow position:
               
chr3:53113279-53112884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 21
               

               
Conread position:
               
235-630
               

               
Cow position:
               
chr3:5100668-5101044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 153
               

               
Conread position:
               
238-629
               

               
Cow position:
               
chr3:52017872-52017477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
163, 281
               

               
Conread position:
               
238-630
               

               
Cow position:
               
chr3:31771787-31771416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
13, 71
               

               
Conread position:
               
244-454
               

               
Cow position:
               
chr3:33693914-33693702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
168, 134
               

               
Conread position:
               
244-493
               

               
Cow position:
               
chr3:60265159-60265397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
200, 86
               

               
Conread position:
               
244-496
               

               
Cow position:
               
chr3:8733264-8733515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
200, 81
               

               
Conread position:
               
244-568
               

               
Cow position:
               
chr3:13507563-13507241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
146, 202
               

               
Conread position:
               
244-630
               

               
Cow position:
               
chr3:61279003-61278622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
241, 42
               

               
Conread position:
               
245-479
               

               
Cow position:
               
chr3:73820277-73820510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
148, 14
               

               
Conread position:
               
245-493
               

               
Cow position:
               
chr3:26874684-26874434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
146, 92
               

               
Conread position:
               
245-564
               

               
Cow position:
               
chr3:15506542-15506229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
141, 76
               

               
Conread position:
               
245-630
               

               
Cow position:
               
chr3:37599334-37599700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
245-654
               

               
Cow position:
               
chr3:42480708-42480313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 26
               

               
Conread position:
               
246-463
               

               
Cow position:
               
chr3:35621394-35621178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
148, 98
               

               
Conread position:
               
246-486
               

               
Cow position:
               
chr3:53240349-53240118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
246-504
               

               
Cow position:
               
chr3:24935456-24935204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
232, 10
               

               
Conread position:
               
246-534
               

               
Cow position:
               
chr3:63269315-63269034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 22
               

               
Conread position:
               
246-598
               

               
Cow position:
               
chr3:25755113-25754784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
53, 66
               

               
Conread position:
               
246-604
               

               
Cow position:
               
chr3:61144187-61143835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 83
               

               
Conread position:
               
246-630
               

               
Cow position:
               
chr3:29887327-29887708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 57
               

               
Conread position:
               
246-630
               

               
Cow position:
               
chr3:70565645-70566022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 144
               

               
Conread position:
               
246-630
               

               
Cow position:
               
chr3:80053452-80053818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
250, 10
               

               
Conread position:
               
246-637
               

               
Cow position:
               
chr3:51033459-51033054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
42, 32
               

               
Conread position:
               
246-658
               

               
Cow position:
               
chr3:8394035-8393622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 261
               

               
Conread position:
               
247-389
               

               
Cow position:
               
chr3:21997696-21997838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
247-405
               

               
Cow position:
               
chr3:56704229-56704387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
247-424
               

               
Cow position:
               
chr3:23667712-23667537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
90, 17
               

               
Conread position:
               
247-447
               

               
Cow position:
               
chr3:55984190-55983986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
142, 65
               

               
Conread position:
               
247-453
               

               
Cow position:
               
chr3:72503804-72504013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
247-470
               

               
Cow position:
               
chr3:84175732-84175957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
150, 9
               

               
Conread position:
               
247-479
               

               
Cow position:
               
chr3:59621556-59621785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
247-486
               

               
Cow position:
               
chr3:61323423-61323185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
64, 130
               

               
Conread position:
               
247-493
               

               
Cow position:
               
chr3:4050285-4050037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
153, 113
               

               
Conread position:
               
247-493
               

               
Cow position:
               
chr3:58973387-58973148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
151, 15
               

               
Conread position:
               
247-529
               

               
Cow position:
               
chr3:20677750-20678021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
230, 83
               

               
Conread position:
               
247-547
               

               
Cow position:
               
chr3:14599028-14598745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
53, 17
               

               
Conread position:
               
247-550
               

               
Cow position:
               
chr3:57760590-57760294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
229, 150
               

               
Conread position:
               
247-567
               

               
Cow position:
               
chr3:74134796-74134484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 198
               

               
Conread position:
               
247-568
               

               
Cow position:
               
chr3:27940051-27940350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
144, 83
               

               
Conread position:
               
247-593
               

               
Cow position:
               
chr3:3738573-3738237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
230, 78
               

               
Conread position:
               
247-596
               

               
Cow position:
               
chr3:15752544-15752878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 81
               

               
Conread position:
               
247-604
               

               
Cow position:
               
chr3:81471004-81471359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
158, 170
               

               
Conread position:
               
247-618
               

               
Cow position:
               
chr3:70899982-70899628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
230, 36
               

               
Conread position:
               
247-624
               

               
Cow position:
               
chr3:26218961-26219339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
150, 17
               

               
Conread position:
               
247-625
               

               
Cow position:
               
chr3:57624556-57624184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
343, 214
               

               
Conread position:
               
247-626
               

               
Cow position:
               
chr3:14626058-14626430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
98, 261
               

               
Conread position:
               
247-626
               

               
Cow position:
               
chr3:34271006-34270651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
43, 84
               

               
Conread position:
               
247-626
               

               
Cow position:
               
chr3:67704638-67704260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 257
               

               
Conread position:
               
247-629
               

               
Cow position:
               
chr3:42423236-42423614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
145, 72
               

               
Conread position:
               
247-630
               

               
Cow position:
               
chr3:12711823-12712207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 253
               

               
Conread position:
               
247-630
               

               
Cow position:
               
chr3:14601612-14601997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 262
               

               
Conread position:
               
247-630
               

               
Cow position:
               
chr3:55271953-55272324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
148, 249
               

               
Conread position:
               
247-630
               

               
Cow position:
               
chr3:56059903-56059523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
146, 254
               

               
Conread position:
               
247-630
               

               
Cow position:
               
chr3:59208886-59208530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
230, 33
               

               
Conread position:
               
247-630
               

               
Cow position:
               
chr3:62789083-62789488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
247-630
               

               
Cow position:
               
chr3:73443004-73443371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
247-634
               

               
Cow position:
               
chr3:48296790-48296423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 83
               

               
Conread position:
               
247-637
               

               
Cow position:
               
chr3:14263484-14263101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
143, 30
               

               
Conread position:
               
248-384
               

               
Cow position:
               
chr3:909542-909678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
248-389
               

               
Cow position:
               
chr3:11292157-11292298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
248-410
               

               
Cow position:
               
chr3:61467099-61467264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
248-442
               

               
Cow position:
               
chr3:28238481-28238675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
150, 127
               

               
Conread position:
               
248-462
               

               
Cow position:
               
chr3:10104131-10103924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
248-479
               

               
Cow position:
               
chr3:34675812-34675583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
142, 13
               

               
Conread position:
               
248-493
               

               
Cow position:
               
chr3:24352951-24352705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
143, 76
               

               
Conread position:
               
248-554
               

               
Cow position:
               
chr3:3736390-3736076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
28, 57
               

               
Conread position:
               
248-624
               

               
Cow position:
               
chr3:68627598-68627953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
229, 60
               

               
Conread position:
               
248-628
               

               
Cow position:
               
chr3:66375413-66375039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 41
               

               
Conread position:
               
248-630
               

               
Cow position:
               
chr3:62826527-62826907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 67
               

               
Conread position:
               
248-659
               

               
Cow position:
               
chr3:13577111-13577495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
379, 110
               

               
Conread position:
               
249-438
               

               
Cow position:
               
chr3:56483609-56483414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
95, 178
               

               
Conread position:
               
249-451
               

               
Cow position:
               
chr3:35873883-35874080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
124, 24
               

               
Conread position:
               
249-452
               

               
Cow position:
               
chr3:14505825-14506029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
136, 55
               

               
Conread position:
               
249-476
               

               
Cow position:
               
chr3:61116763-61116995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
133, 123
               

               
Conread position:
               
249-479
               

               
Cow position:
               
chr3:20993903-20993671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
136, 119
               

               
Conread position:
               
249-480
               

               
Cow position:
               
chr3:53318490-53318263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
249-491
               

               
Cow position:
               
chr3:51492873-51492628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
141, 19
               

               
Conread position:
               
249-554
               

               
Cow position:
               
chr3:49131973-49132258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
57, 50
               

               
Conread position:
               
249-568
               

               
Cow position:
               
chr3:71135876-71135566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
206, 50
               

               
Conread position:
               
249-600
               

               
Cow position:
               
chr3:18725554-18725888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 118
               

               
Conread position:
               
249-604
               

               
Cow position:
               
chr3:20471275-20471618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
127, 62
               

               
Conread position:
               
249-607
               

               
Cow position:
               
chr3:50614731-50614378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 250
               

               
Conread position:
               
249-607
               

               
Cow position:
               
chr3:67543781-67544135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
40, 7
               

               
Conread position:
               
249-622
               

               
Cow position:
               
chr3:66707977-66708348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 50
               

               
Conread position:
               
249-624
               

               
Cow position:
               
chr3:37186916-37186558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 46
               

               
Conread position:
               
249-624
               

               
Cow position:
               
chr3:53538601-53538245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
163, 24
               

               
Conread position:
               
249-624
               

               
Cow position:
               
chr3:55085080-55085462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
103, 9
               

               
Conread position:
               
249-624
               

               
Cow position:
               
chr3:59588600-59588241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
219, 80
               

               
Conread position:
               
249-626
               

               
Cow position:
               
chr3:26493141-26493504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
206, 50
               

               
Conread position:
               
249-627
               

               
Cow position:
               
chr3:37485707-37486064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
227, 74
               

               
Conread position:
               
249-629
               

               
Cow position:
               
chr3:5419774-5420149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
56, 61
               

               
Conread position:
               
249-629
               

               
Cow position:
               
chr3:12255568-12255197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 29
               

               
Conread position:
               
249-629
               

               
Cow position:
               
chr3:53588295-53588673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 10
               

               
Conread position:
               
249-630
               

               
Cow position:
               
chr3:8752876-8752515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
140, 28
               

               
Conread position:
               
249-630
               

               
Cow position:
               
chr3:28898133-28898506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 145
               

               
Conread position:
               
249-630
               

               
Cow position:
               
chr3:45648220-45647853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 77
               

               
Conread position:
               
249-630
               

               
Cow position:
               
chr3:80072219-80071833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
143, 262
               

               
Conread position:
               
249-631
               

               
Cow position:
               
chr3:23477080-23476714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
50, 82
               

               
Conread position:
               
249-631
               

               
Cow position:
               
chr3:27532565-27532947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 50
               

               
Conread position:
               
249-631
               

               
Cow position:
               
chr3:27785356-27784996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
156, 61
               

               
Conread position:
               
249-631
               

               
Cow position:
               
chr3:46901287-46900910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
107, 15
               

               
Conread position:
               
249-631
               

               
Cow position:
               
chr3:48629499-48629871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 50
               

               
Conread position:
               
249-631
               

               
Cow position:
               
chr3:49139947-49140332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
36, 85
               

               
Conread position:
               
249-631
               

               
Cow position:
               
chr3:77225201-77224835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
138, 28
               

               
Conread position:
               
249-632
               

               
Cow position:
               
chr3:29507671-29507310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
365, 28
               

               
Conread position:
               
249-647
               

               
Cow position:
               
chr3:23091889-23092289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
150, 28
               

               
Conread position:
               
249-652
               

               
Cow position:
               
chr3:51255869-51255478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
121, 50
               

               
Conread position:
               
249-653
               

               
Cow position:
               
chr3:53509604-53509995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
290, 67
               

               
Conread position:
               
249-653
               

               
Cow position:
               
chr3:63147062-63147454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
133, 39
               

               
Conread position:
               
249-658
               

               
Cow position:
               
chr3:64172530-64172129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 169
               

               
Conread position:
               
249-659
               

               
Cow position:
               
chr3:33327799-33327396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 252
               

               
Conread position:
               
250-426
               

               
Cow position:
               
chr3:74900554-74900726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
250-449
               

               
Cow position:
               
chr3:27727742-27727940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
134, 87
               

               
Conread position:
               
250-478
               

               
Cow position:
               
chr3:17235128-17235348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
99, 42
               

               
Conread position:
               
250-480
               

               
Cow position:
               
chr3:32457282-32457059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
250-493
               

               
Cow position:
               
chr3:116279-116042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
37, 137
               

               
Conread position:
               
250-493
               

               
Cow position:
               
chr3:58767352-58767114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
145, 188
               

               
Conread position:
               
250-493
               

               
Cow position:
               
chr3:59883980-59884228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
250-493
               

               
Cow position:
               
chr3:75045787-75046033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
40, 82
               

               
Conread position:
               
250-507
               

               
Cow position:
               
chr3:30222280-30222015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
250-535
               

               
Cow position:
               
chr3:66883855-66884133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
146, 80
               

               
Conread position:
               
250-551
               

               
Cow position:
               
chr3:5366857-5366564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
231, 73
               

               
Conread position:
               
250-565
               

               
Cow position:
               
chr3:55373480-55373794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
67, 54
               

               
Conread position:
               
250-568
               

               
Cow position:
               
chr3:17447526-17447830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
147, 79
               

               
Conread position:
               
250-568
               

               
Cow position:
               
chr3:26960499-26960817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
145, 253
               

               
Conread position:
               
250-571
               

               
Cow position:
               
chr3:49790723-49791041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
222, 129
               

               
Conread position:
               
250-602
               

               
Cow position:
               
chr3:2680602-2680255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
231, 80
               

               
Conread position:
               
250-616
               

               
Cow position:
               
chr3:74611652-74611292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
140, 49
               

               
Conread position:
               
250-630
               

               
Cow position:
               
chr3:54340333-54340700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
226, 54
               

               
Conread position:
               
250-631
               

               
Cow position:
               
chr3:70401985-70401618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 78
               

               
Conread position:
               
250-634
               

               
Cow position:
               
chr3:49328034-49327656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
11, 249
               

               
Conread position:
               
250-640
               

               
Cow position:
               
chr3:15228734-15229113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
250-644
               

               
Cow position:
               
chr3:8457743-8457358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 49
               

               
Conread position:
               
250-644
               

               
Cow position:
               
chr3:80581744-80581373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 79
               

               
Conread position:
               
251-386
               

               
Cow position:
               
chr3:57877654-57877519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
251-458
               

               
Cow position:
               
chr3:53091576-53091370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 27
               

               
Conread position:
               
251-486
               

               
Cow position:
               
chr3:25250991-25250760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
155, 48
               

               
Conread position:
               
251-488
               

               
Cow position:
               
chr3:79645342-79645594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
48, 207
               

               
Conread position:
               
251-493
               

               
Cow position:
               
chr3:61322928-61322690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
132, 48
               

               
Conread position:
               
251-526
               

               
Cow position:
               
chr3:84596877-84597143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
105, 41
               

               
Conread position:
               
251-568
               

               
Cow position:
               
chr3:61009353-61009658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
98, 52
               

               
Conread position:
               
251-619
               

               
Cow position:
               
chr3:525434-525081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
31, 23
               

               
Conread position:
               
251-626
               

               
Cow position:
               
chr3:66292088-66292458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 168
               

               
Conread position:
               
251-630
               

               
Cow position:
               
chr3:15655058-15655432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 159
               

               
Conread position:
               
251-630
               

               
Cow position:
               
chr3:49650476-49650096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 248
               

               
Conread position:
               
251-634
               

               
Cow position:
               
chr3:59206325-59205953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
42, 35
               

               
Conread position:
               
251-641
               

               
Cow position:
               
chr3:18458578-18458951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 52
               

               
Conread position:
               
252-493
               

               
Cow position:
               
chr3:75687351-75687594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
153, 22
               

               
Conread position:
               
252-576
               

               
Cow position:
               
chr3:15751627-15751957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
138, 12
               

               
Conread position:
               
252-630
               

               
Cow position:
               
chr3:17934851-17935207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 173
               

               
Conread position:
               
252-644
               

               
Cow position:
               
chr3:17895935-17895556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 39
               

               
Conread position:
               
255-468
               

               
Cow position:
               
chr3:16254757-16254953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
255-493
               

               
Cow position:
               
chr3:34669649-34669883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
225, 101
               

               
Conread position:
               
255-625
               

               
Cow position:
               
chr3:28908119-28908474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 192
               

               
Conread position:
               
255-631
               

               
Cow position:
               
chr3:54862335-54862709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 22
               

               
Conread position:
               
255-637
               

               
Cow position:
               
chr3:59630429-59630791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 75
               

               
Conread position:
               
256-470
               

               
Cow position:
               
chr3:22510108-22509895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
145, 39
               

               
Conread position:
               
256-529
               

               
Cow position:
               
chr3:74502242-74502508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
216, 132
               

               
Conread position:
               
256-626
               

               
Cow position:
               
chr3:62884286-62883922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
136, 43
               

               
Conread position:
               
256-631
               

               
Cow position:
               
chr3:59608585-59608224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
198, 46
               

               
Conread position:
               
256-631
               

               
Cow position:
               
chr3:76387526-76387897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
125, 8
               

               
Conread position:
               
257-631
               

               
Cow position:
               
chr3:35852389-35852752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
139, 175
               

               
Conread position:
               
258-490
               

               
Cow position:
               
chr3:55109532-55109769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
258-562
               

               
Cow position:
               
chr3:31046869-31047166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
33, 67
               

               
Conread position:
               
258-588
               

               
Cow position:
               
chr3:55835740-55836071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
132, 241
               

               
Conread position:
               
258-629
               

               
Cow position:
               
chr3:53739104-53739474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 244
               

               
Conread position:
               
258-630
               

               
Cow position:
               
chr3:72391163-72390801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
214, 138
               

               
Conread position:
               
258-653
               

               
Cow position:
               
chr3:45647761-45647371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
112, 185
               

               
Conread position:
               
259-490
               

               
Cow position:
               
chr3:46541749-46541980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
218, 158
               

               
Conread position:
               
259-493
               

               
Cow position:
               
chr3:22232572-22232807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
16, 81
               

               
Conread position:
               
259-548
               

               
Cow position:
               
chr3:31850297-31850582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
218, 71
               

               
Conread position:
               
259-626
               

               
Cow position:
               
chr3:79292908-79292554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 42
               

               
Conread position:
               
259-629
               

               
Cow position:
               
chr3:62292034-62292399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
23, 126
               

               
Conread position:
               
259-630
               

               
Cow position:
               
chr3:23111433-23111788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
248, 44
               

               
Conread position:
               
259-631
               

               
Cow position:
               
chr3:37452148-37451784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
126, 40
               

               
Conread position:
               
259-633
               

               
Cow position:
               
chr3:61840355-61840002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
135, 71
               

               
Conread position:
               
259-636
               

               
Cow position:
               
chr3:72676171-72675797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 137
               

               
Conread position:
               
260-479
               

               
Cow position:
               
chr3:71238548-71238333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
62, 70
               

               
Conread position:
               
260-495
               

               
Cow position:
               
chr3:63203512-63203276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
100, 23
               

               
Conread position:
               
260-624
               

               
Cow position:
               
chr3:27545740-27546111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 115
               

               
Conread position:
               
260-634
               

               
Cow position:
               
chr3:69750629-69750989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
6, 54
               

               
Conread position:
               
261-553
               

               
Cow position:
               
chr3:79376345-79376051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
136, 38
               

               
Conread position:
               
261-626
               

               
Cow position:
               
chr3:45534218-45534579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
142, 69
               

               
Conread position:
               
261-630
               

               
Cow position:
               
chr3:15684844-15685194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
132, 38
               

               
Conread position:
               
262-489
               

               
Cow position:
               
chr3:84199754-84199528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
12, 154
               

               
Conread position:
               
262-553
               

               
Cow position:
               
chr3:10896899-10896621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 127
               

               
Conread position:
               
262-644
               

               
Cow position:
               
chr3:39171409-39171782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 89
               

               
Conread position:
               
263-547
               

               
Cow position:
               
chr3:3638254-3637981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
217, 66
               

               
Conread position:
               
264-616
               

               
Cow position:
               
chr3:58968828-58969165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
213, 134
               

               
Conread position:
               
264-626
               

               
Cow position:
               
chr3:26920985-26920617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 98
               

               
Conread position:
               
264-644
               

               
Cow position:
               
chr3:56302-56667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 66
               

               
Conread position:
               
264-644
               

               
Cow position:
               
chr3:5097282-5096905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 240
               

               
Conread position:
               
265-493
               

               
Cow position:
               
chr3:7940483-7940711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
131, 65
               

               
Conread position:
               
265-605
               

               
Cow position:
               
chr3:31907070-31907405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
134, 34
               

               
Conread position:
               
266-479
               

               
Cow position:
               
chr3:80468605-80468815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
266-652
               

               
Cow position:
               
chr3:52721936-52722301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
20, 34
               

               
Conread position:
               
267-602
               

               
Cow position:
               
chr3:26553643-26553968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
123, 99
               

               
Conread position:
               
268-631
               

               
Cow position:
               
chr3:12287293-12286950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
120, 28
               

               
Conread position:
               
270-626
               

               
Cow position:
               
chr3:58206380-58206731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
25, 35
               

               
Conread position:
               
270-630
               

               
Cow position:
               
chr3:6690069-6689707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
147, 135
               

               
Conread position:
               
272-561
               

               
Cow position:
               
chr3:78896714-78896433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
202, 156
               

               
Conread position:
               
272-643
               

               
Cow position:
               
chr3:20437589-20437944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
355, 119
               

               
Conread position:
               
273-479
               

               
Cow position:
               
chr3:13890543-13890335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
273-549
               

               
Cow position:
               
chr3:53094865-53095143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
117, 228
               

               
Conread position:
               
273-604
               

               
Cow position:
               
chr3:30008842-30009168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
117, 180
               

               
Conread position:
               
273-618
               

               
Cow position:
               
chr3:45279532-45279185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
199, 117
               

               
Conread position:
               
273-629
               

               
Cow position:
               
chr3:31206942-31206589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
123, 146
               

               
Conread position:
               
273-630
               

               
Cow position:
               
chr3:15954019-15954361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
117, 215
               

               
Conread position:
               
273-630
               

               
Cow position:
               
chr3:31055947-31056286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
266, 117
               

               
Conread position:
               
273-630
               

               
Cow position:
               
chr3:53572686-53573034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
116, 219
               

               
Conread position:
               
273-630
               

               
Cow position:
               
chr3:71430138-71430497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 222
               

               
Conread position:
               
273-630
               

               
Cow position:
               
chr3:79220924-79220565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
124, 228
               

               
Conread position:
               
274-563
               

               
Cow position:
               
chr3:25945158-25944860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
116, 234
               

               
Conread position:
               
274-599
               

               
Cow position:
               
chr3:5044748-5045063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
197, 116
               

               
Conread position:
               
274-603
               

               
Cow position:
               
chr3:74088115-74088431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
198, 42
               

               
Conread position:
               
274-630
               

               
Cow position:
               
chr3:55116912-55117256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
204, 78
               

               
Conread position:
               
276-494
               

               
Cow position:
               
chr3:26739351-26739576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
7, 15
               

               
Conread position:
               
279-637
               

               
Cow position:
               
chr3:66609784-66610129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 59
               

               
Conread position:
               
280-508
               

               
Cow position:
               
chr3:76015351-76015117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
280-588
               

               
Cow position:
               
chr3:23444829-23445132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
92, 155
               

               
Conread position:
               
280-605
               

               
Cow position:
               
chr3:72131239-72131556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
112, 72
               

               
Conread position:
               
280-629
               

               
Cow position:
               
chr3:72019175-72018840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
22, 26
               

               
Conread position:
               
280-630
               

               
Cow position:
               
chr3:12674984-12675323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
196, 110
               

               
Conread position:
               
280-631
               

               
Cow position:
               
chr3:52863125-52863468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 104
               

               
Conread position:
               
281-569
               

               
Cow position:
               
chr3:68881063-68881339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
196, 57
               

               
Conread position:
               
281-573
               

               
Cow position:
               
chr3:34937902-34937613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
117, 54
               

               
Conread position:
               
281-626
               

               
Cow position:
               
chr3:75711364-75711039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
196, 98
               

               
Conread position:
               
281-636
               

               
Cow position:
               
chr3:59799306-59798964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
115, 211
               

               
Conread position:
               
282-445
               

               
Cow position:
               
chr3:45897665-45897499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
282-445
               

               
Cow position:
               
chr3:45972391-45972557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
283-659
               

               
Cow position:
               
chr3:73759461-73759839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 43
               

               
Conread position:
               
286-562
               

               
Cow position:
               
chr3:35005825-35005561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
253, 9
               

               
Conread position:
               
286-603
               

               
Cow position:
               
chr3:14632930-14633244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 176
               

               
Conread position:
               
286-644
               

               
Cow position:
               
chr3:74878536-74878892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 112
               

               
Conread position:
               
286-653
               

               
Cow position:
               
chr3:56637718-56637359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 25
               

               
Conread position:
               
287-566
               

               
Cow position:
               
chr3:11712017-11711732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 221
               

               
Conread position:
               
287-624
               

               
Cow position:
               
chr3:65800637-65800317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
108, 42
               

               
Conread position:
               
287-630
               

               
Cow position:
               
chr3:77449109-77448790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
250, 12
               

               
Conread position:
               
287-631
               

               
Cow position:
               
chr3:80818769-80818448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
103, 130
               

               
Conread position:
               
289-603
               

               
Cow position:
               
chr3:61171457-61171767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
20, 103
               

               
Conread position:
               
294-629
               

               
Cow position:
               
chr3:19708063-19708382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 36
               

               
Conread position:
               
295-603
               

               
Cow position:
               
chr3:22820615-22820312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
100, 25
               

               
Conread position:
               
296-626
               

               
Cow position:
               
chr3:83921227-83920918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
78, 30
               

               
Conread position:
               
296-630
               

               
Cow position:
               
chr3:10347394-10347070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
181, 34
               

               
Conread position:
               
296-633
               

               
Cow position:
               
chr3:46350714-46350369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
297-617
               

               
Cow position:
               
chr3:69778857-69779175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
90, 115
               

               
Conread position:
               
297-626
               

               
Cow position:
               
chr3:69944892-69945219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
90, 115
               

               
Conread position:
               
298-598
               

               
Cow position:
               
chr3:18216724-18217017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
71, 164
               

               
Conread position:
               
298-634
               

               
Cow position:
               
chr3:58174946-58174623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
95, 33
               

               
Conread position:
               
298-646
               

               
Cow position:
               
chr3:58131037-58130700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
95, 142
               

               
Conread position:
               
298-646
               

               
Cow position:
               
chr3:74699341-74699695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
84, 77
               

               
Conread position:
               
298-647
               

               
Cow position:
               
chr3:60174445-60174772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
303, 61
               

               
Conread position:
               
299-547
               

               
Cow position:
               
chr3:27696938-27697184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
173, 107
               

               
Conread position:
               
299-626
               

               
Cow position:
               
chr3:79591851-79592169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
173, 64
               

               
Conread position:
               
299-630
               

               
Cow position:
               
chr3:39112794-39112467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 35
               

               
Conread position:
               
299-633
               

               
Cow position:
               
chr3:4457031-4457363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
72, 198
               

               
Conread position:
               
299-635
               

               
Cow position:
               
chr3:79902536-79902214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
174, 91
               

               
Conread position:
               
299-636
               

               
Cow position:
               
chr3:18185115-18184778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
103, 91
               

               
Conread position:
               
299-637
               

               
Cow position:
               
chr3:79148245-79148567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
173, 83
               

               
Conread position:
               
300-630
               

               
Cow position:
               
chr3:64375510-64375833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
237, 191
               

               
Conread position:
               
300-644
               

               
Cow position:
               
chr3:17957506-17957169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
94, 183
               

               
Conread position:
               
302-508
               

               
Cow position:
               
chr3:15992756-15992543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
304-479
               

               
Cow position:
               
chr3:43727114-43726937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
82, 153
               

               
Conread position:
               
311-425
               

               
Cow position:
               
chr3:622934-623053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
311-484
               

               
Cow position:
               
chr3:69105434-69105259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
80, 150
               

               
Conread position:
               
311-493
               

               
Cow position:
               
chr3:32183990-32184176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
61, 99
               

               
Conread position:
               
311-535
               

               
Cow position:
               
chr3:70632049-70631826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
40, 120
               

               
Conread position:
               
311-567
               

               
Cow position:
               
chr3:16656467-16656702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
166, 20
               

               
Conread position:
               
311-624
               

               
Cow position:
               
chr3:43307501-43307814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
94, 80
               

               
Conread position:
               
311-629
               

               
Cow position:
               
chr3:60892653-60892350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
32, 75
               

               
Conread position:
               
311-630
               

               
Cow position:
               
chr3:33698759-33698437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
90, 184
               

               
Conread position:
               
311-630
               

               
Cow position:
               
chr3:42178181-42177876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 18
               

               
Conread position:
               
311-630
               

               
Cow position:
               
chr3:68342220-68342538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
86, 191
               

               
Conread position:
               
312-626
               

               
Cow position:
               
chr3:81277671-81277984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
96, 185
               

               
Conread position:
               
314-479
               

               
Cow position:
               
chr3:80953673-80953506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
314-594
               

               
Cow position:
               
chr3:55947609-55947327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
76, 187
               

               
Conread position:
               
314-630
               

               
Cow position:
               
chr3:69849486-69849786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 15
               

               
Conread position:
               
314-636
               

               
Cow position:
               
chr3:43528207-43528527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
34, 157
               

               
Conread position:
               
316-568
               

               
Cow position:
               
chr3:55106416-55106665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
80, 90
               

               
Conread position:
               
317-624
               

               
Cow position:
               
chr3:77227342-77227040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
82, 30
               

               
Conread position:
               
320-508
               

               
Cow position:
               
chr3:39328419-39328224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
320-620
               

               
Cow position:
               
chr3:45524286-45523990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
70, 91
               

               
Conread position:
               
320-630
               

               
Cow position:
               
chr3:61857526-61857212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 9
               

               
Conread position:
               
321-600
               

               
Cow position:
               
chr3:41328459-41328201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
173, 30
               

               
Conread position:
               
323-605
               

               
Cow position:
               
chr3:14625374-14625647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 98
               

               
Conread position:
               
323-634
               

               
Cow position:
               
chr3:5416204-5416519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
67, 100
               

               
Conread position:
               
325-630
               

               
Cow position:
               
chr3:61539820-61539512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
65, 189
               

               
Conread position:
               
326-633
               

               
Cow position:
               
chr3:17952668-17952369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
327-626
               

               
Cow position:
               
chr3:54496080-54495783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
68, 85
               

               
Conread position:
               
327-631
               

               
Cow position:
               
chr3:4864500-4864802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
13, 7
               

               
Conread position:
               
330-626
               

               
Cow position:
               
chr3:77496840-77496537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 180
               

               
Conread position:
               
332-568
               

               
Cow position:
               
chr3:6772585-6772820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
188, 167
               

               
Conread position:
               
332-626
               

               
Cow position:
               
chr3:68582997-68583282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
148, 84
               

               
Conread position:
               
332-630
               

               
Cow position:
               
chr3:49218307-49218591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 168
               

               
Conread position:
               
332-630
               

               
Cow position:
               
chr3:75727577-75727873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
148, 161
               

               
Conread position:
               
332-633
               

               
Cow position:
               
chr3:23877004-23876711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
73, 167
               

               
Conread position:
               
332-636
               

               
Cow position:
               
chr3:59515111-59514821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
75, 86
               

               
Conread position:
               
332-637
               

               
Cow position:
               
chr3:8147660-8147954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
62, 166
               

               
Conread position:
               
333-630
               

               
Cow position:
               
chr3:80081807-80082101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
60, 172
               

               
Conread position:
               
334-528
               

               
Cow position:
               
chr3:79270953-79271144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
62, 73
               

               
Conread position:
               
334-638
               

               
Cow position:
               
chr3:9843592-9843292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
66, 55
               

               
Conread position:
               
335-479
               

               
Cow position:
               
chr3:81337262-81337124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
335-601
               

               
Cow position:
               
chr3:52650524-52650788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
53, 168
               

               
Conread position:
               
335-605
               

               
Cow position:
               
chr3:7365884-7366134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
141, 57
               

               
Conread position:
               
335-617
               

               
Cow position:
               
chr3:84000617-84000341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
139, 162
               

               
Conread position:
               
335-626
               

               
Cow position:
               
chr3:22171195-22170909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
62, 166
               

               
Conread position:
               
335-626
               

               
Cow position:
               
chr3:54960193-54959911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
59, 15
               

               
Conread position:
               
335-630
               

               
Cow position:
               
chr3:48269869-48269579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
60, 111
               

               
Conread position:
               
336-566
               

               
Cow position:
               
chr3:15859663-15859891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
61, 127
               

               
Conread position:
               
337-535
               

               
Cow position:
               
chr3:18056441-18056248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
140, 34
               

               
Conread position:
               
337-634
               

               
Cow position:
               
chr3:2396778-2397071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
58, 10
               

               
Conread position:
               
337-646
               

               
Cow position:
               
chr3:4031976-4031670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
62, 163
               

               
Conread position:
               
338-493
               

               
Cow position:
               
chr3:77729457-77729297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
60, 132
               

               
Conread position:
               
338-568
               

               
Cow position:
               
chr3:83201524-83201750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
64, 81
               

               
Conread position:
               
338-605
               

               
Cow position:
               
chr3:16362734-16362998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
64, 56
               

               
Conread position:
               
338-642
               

               
Cow position:
               
chr3:27544332-27544625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
13, 59
               

               
Conread position:
               
339-487
               

               
Cow position:
               
chr3:28323178-28323036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
61, 103
               

               
Conread position:
               
339-493
               

               
Cow position:
               
chr3:83707973-83708126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
137, 95
               

               
Conread position:
               
339-631
               

               
Cow position:
               
chr3:364212-364504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
57, 71
               

               
Conread position:
               
339-644
               

               
Cow position:
               
chr3:78894325-78894612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
340-559
               

               
Cow position:
               
chr3:21693950-21693728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 81
               

               
Conread position:
               
340-624
               

               
Cow position:
               
chr3:56703851-56704132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
39, 120
               

               
Conread position:
               
340-626
               

               
Cow position:
               
chr3:12669082-12668799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
65, 8
               

               
Conread position:
               
340-630
               

               
Cow position:
               
chr3:69961716-69961995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
23, 76
               

               
Conread position:
               
341-479
               

               
Cow position:
               
chr3:15790553-15790420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
341-490
               

               
Cow position:
               
chr3:15232029-15231876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
341-493
               

               
Cow position:
               
chr3:53192428-53192577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
58, 49
               

               
Conread position:
               
341-619
               

               
Cow position:
               
chr3:79207988-79208276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
49, 113
               

               
Conread position:
               
343-479
               

               
Cow position:
               
chr3:3062564-3062423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
343-629
               

               
Cow position:
               
chr3:83934504-83934231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
196, 62
               

               
Conread position:
               
343-631
               

               
Cow position:
               
chr3:14725299-14725012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
5, 160
               

               
Conread position:
               
344-625
               

               
Cow position:
               
chr3:42483903-42483621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
51, 160
               

               
Conread position:
               
344-630
               

               
Cow position:
               
chr3:44622891-44623181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 59
               

               
Conread position:
               
344-630
               

               
Cow position:
               
chr3:57553853-57554131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
44, 151
               

               
Conread position:
               
345-636
               

               
Cow position:
               
chr3:61678699-61678401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
46, 156
               

               
Conread position:
               
346-560
               

               
Cow position:
               
chr3:25060073-25059859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
54, 150
               

               
Conread position:
               
346-603
               

               
Cow position:
               
chr3:44534766-44535022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
54, 44
               

               
Conread position:
               
347-493
               

               
Cow position:
               
chr3:59271535-59271386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
347-626
               

               
Cow position:
               
chr3:41366988-41367263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
52, 134
               

               
Conread position:
               
347-626
               

               
Cow position:
               
chr3:63860897-63861181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
47, 84
               

               
Conread position:
               
347-628
               

               
Cow position:
               
chr3:29807459-29807180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
24, 147
               

               
Conread position:
               
347-630
               

               
Cow position:
               
chr3:3164503-3164780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
125, 150
               

               
Conread position:
               
347-633
               

               
Cow position:
               
chr3:82657095-82657372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
53, 25
               

               
Conread position:
               
348-485
               

               
Cow position:
               
chr3:51506963-51506829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
102, 48
               

               
Conread position:
               
349-622
               

               
Cow position:
               
chr3:30358643-30358910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
51, 146
               

               
Conread position:
               
350-488
               

               
Cow position:
               
chr3:6900618-6900482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
127, 45
               

               
Conread position:
               
350-493
               

               
Cow position:
               
chr3:27247200-27247345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
350-607
               

               
Cow position:
               
chr3:73590005-73590259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
44, 152
               

               
Conread position:
               
350-624
               

               
Cow position:
               
chr3:81940247-81939973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
50, 150
               

               
Conread position:
               
350-630
               

               
Cow position:
               
chr3:19789125-19789403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
53, 40
               

               
Conread position:
               
350-631
               

               
Cow position:
               
chr3:28675976-28675704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
56, 42
               

               
Conread position:
               
350-631
               

               
Cow position:
               
chr3:70333492-70333758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
350-634
               

               
Cow position:
               
chr3:49231006-49230727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
53, 6
               

               
Conread position:
               
350-644
               

               
Cow position:
               
chr3:77467929-77467634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
29, 151
               

               
Conread position:
               
350-647
               

               
Cow position:
               
chr3:80655436-80655155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
251, 48
               

               
Conread position:
               
351-475
               

               
Cow position:
               
chr3:30701298-30701170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
351-625
               

               
Cow position:
               
chr3:49731651-49731916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
49, 148
               

               
Conread position:
               
352-568
               

               
Cow position:
               
chr3:56301363-56301570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
125, 21
               

               
Conread position:
               
353-626
               

               
Cow position:
               
chr3:55445347-55445087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
40, 26
               

               
Conread position:
               
355-532
               

               
Cow position:
               
chr3:27212348-27212173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
45, 148
               

               
Conread position:
               
356-618
               

               
Cow position:
               
chr3:2903310-2903562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
42, 116
               

               
Conread position:
               
356-630
               

               
Cow position:
               
chr3:20663550-20663822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
49, 34
               

               
Conread position:
               
357-611
               

               
Cow position:
               
chr3:4087177-4087431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
33, 120
               

               
Conread position:
               
358-604
               

               
Cow position:
               
chr3:8604037-8604272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
118, 30
               

               
Conread position:
               
358-631
               

               
Cow position:
               
chr3:25691732-25691464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
109, 37
               

               
Conread position:
               
360-630
               

               
Cow position:
               
chr3:43657726-43658003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
22, 11
               

               
Conread position:
               
361-626
               

               
Cow position:
               
chr3:34315976-34316244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
18, 141
               

               
Conread position:
               
364-605
               

               
Cow position:
               
chr3:49455213-49454976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
114, 133
               

               
Conread position:
               
364-631
               

               
Cow position:
               
chr3:16004015-16004271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
113, 124
               

               
Conread position:
               
365-626
               

               
Cow position:
               
chr3:27286204-27285945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
174, 41
               

               
Conread position:
               
366-626
               

               
Cow position:
               
chr3:15661728-15661981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
237, 32
               

               
Conread position:
               
372-625
               

               
Cow position:
               
chr3:42588327-42588070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
18, 134
               

               
Conread position:
               
383-630
               

               
Cow position:
               
chr3:20129901-20129657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
89, 128
               

               
Conread position:
               
383-630
               

               
Cow position:
               
chr3:31419658-31419417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
88, 115
               

               
Conread position:
               
384-626
               

               
Cow position:
               
chr3:21341007-21341243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
93, 109
               

               
Conread position:
               
384-630
               

               
Cow position:
               
chr3:51604649-51604891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
93, 53
               

               
Conread position:
               
384-644
               

               
Cow position:
               
chr3:32870102-32869851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
83, 24
               

               
Conread position:
               
385-626
               

               
Cow position:
               
chr3:22021021-22021253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
94, 65
               

               
Conread position:
               
386-568
               

               
Cow position:
               
chr3:12576348-12576536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
66, 114
               

               
Conread position:
               
386-634
               

               
Cow position:
               
chr3:51228124-51227867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
388-604
               

               
Cow position:
               
chr3:35283139-35283356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
17, 124
               

               
Conread position:
               
390-604
               

               
Cow position:
               
chr3:11422692-11422489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 18
               

               
Conread position:
               
393-629
               

               
Cow position:
               
chr3:17284791-17284553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
55, 107
               

               
Conread position:
               
393-636
               

               
Cow position:
               
chr3:4223259-4223025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
201, 74
               

               
Conread position:
               
394-626
               

               
Cow position:
               
chr3:73777229-73776998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
61, 105
               

               
Conread position:
               
394-627
               

               
Cow position:
               
chr3:32399310-32399536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
61, 107
               

               
Conread position:
               
394-644
               

               
Cow position:
               
chr3:73417465-73417224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
143, 56
               

               
Conread position:
               
395-630
               

               
Cow position:
               
chr3:22872103-22872336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
79, 110
               

               
Conread position:
               
395-646
               

               
Cow position:
               
chr3:58383911-58383667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
15, 45
               

               
Conread position:
               
396-588
               

               
Cow position:
               
chr3:30055504-30055688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
114, 31
               

               
Conread position:
               
396-629
               

               
Cow position:
               
chr3:33632949-33633169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
396-637
               

               
Cow position:
               
chr3:31298210-31298451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
76, 95
               

               
Conread position:
               
398-567
               

               
Cow position:
               
chr3:10173192-10173357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
141, 41
               

               
Conread position:
               
398-630
               

               
Cow position:
               
chr3:31903173-31903392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
66, 52
               

               
Conread position:
               
398-636
               

               
Cow position:
               
chr3:7858309-7858062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
51, 102
               

               
Conread position:
               
399-634
               

               
Cow position:
               
chr3:16809845-16810079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 99
               

               
Conread position:
               
406-602
               

               
Cow position:
               
chr3:23270031-23269846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 91
               

               
Conread position:
               
406-630
               

               
Cow position:
               
chr3:56704611-56704821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
68, 90
               

               
Conread position:
               
413-614
               

               
Cow position:
               
chr3:55971152-55970957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
68, 83
               

               
Conread position:
               
413-630
               

               
Cow position:
               
chr3:18855021-18854809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
59, 86
               

               
Conread position:
               
413-644
               

               
Cow position:
               
chr3:56102362-56102140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
67, 45
               

               
Conread position:
               
414-630
               

               
Cow position:
               
chr3:51609746-51609532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
62, 83
               

               
Conread position:
               
415-630
               

               
Cow position:
               
chr3:48530569-48530354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
86, 18
               

               
Conread position:
               
415-638
               

               
Cow position:
               
chr3:11640357-11640142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
41, 75
               

               
Conread position:
               
416-607
               

               
Cow position:
               
chr3:70913154-70913340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 82
               

               
Conread position:
               
416-630
               

               
Cow position:
               
chr3:63704108-63703916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
416-631
               

               
Cow position:
               
chr3:53904102-53903901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
423-626
               

               
Cow position:
               
chr3:34392181-34392376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
54, 73
               

               
Conread position:
               
425-630
               

               
Cow position:
               
chr3:36656855-36657054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
49, 72
               

               
Conread position:
               
425-644
               

               
Cow position:
               
chr3:15079156-15079366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 51
               

               
Conread position:
               
426-630
               

               
Cow position:
               
chr3:77276494-77276688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
92, 69
               

               
Conread position:
               
429-629
               

               
Cow position:
               
chr3:51012622-51012816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 68
               

               
Conread position:
               
429-631
               

               
Cow position:
               
chr3:65020246-65020049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 73
               

               
Conread position:
               
432-626
               

               
Cow position:
               
chr3:18607279-18607088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 28
               

               
Conread position:
               
476-646
               

               
Cow position:
               
chr3:72018776-72018611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
63, 15
               
Show alignments to all cow chromosomes.