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Cow genome map

           
Conread name:
           
Ova1-OVRM10096F06
        

               
Conread position:
               
122-644
               

               
Cow position:
               
chr4:44613238-44612721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 49
               

               
Conread position:
               
123-636
               

               
Cow position:
               
chr4:19597102-19597587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
354, 36
               

               
Conread position:
               
129-493
               

               
Cow position:
               
chr4:34022362-34022726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
116, 14
               

               
Conread position:
               
129-605
               

               
Cow position:
               
chr4:19709171-19708698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
41, 323
               

               
Conread position:
               
130-388
               

               
Cow position:
               
chr4:50687634-50687893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
28, 13
               

               
Conread position:
               
132-484
               

               
Cow position:
               
chr4:16814615-16814261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
91, 251
               

               
Conread position:
               
143-626
               

               
Cow position:
               
chr4:15905318-15904834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 27
               

               
Conread position:
               
146-462
               

               
Cow position:
               
chr4:46136959-46136644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
80, 110
               

               
Conread position:
               
147-493
               

               
Cow position:
               
chr4:49629695-49629344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 118
               

               
Conread position:
               
148-594
               

               
Cow position:
               
chr4:13693464-13693910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
16, 85
               

               
Conread position:
               
154-568
               

               
Cow position:
               
chr4:38935560-38935152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
78, 48
               

               
Conread position:
               
156-493
               

               
Cow position:
               
chr4:65815490-65815837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
52, 16
               

               
Conread position:
               
156-630
               

               
Cow position:
               
chr4:21065225-21064771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 75
               

               
Conread position:
               
157-479
               

               
Cow position:
               
chr4:55508062-55508364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
243, 74
               

               
Conread position:
               
158-389
               

               
Cow position:
               
chr4:14020697-14020467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
73, 110
               

               
Conread position:
               
158-471
               

               
Cow position:
               
chr4:38156897-38157207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
243, 11
               

               
Conread position:
               
158-479
               

               
Cow position:
               
chr4:34699846-34700162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
85, 101
               

               
Conread position:
               
158-568
               

               
Cow position:
               
chr4:1026040-1026435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
73, 36
               

               
Conread position:
               
158-598
               

               
Cow position:
               
chr4:18974625-18974196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
6, 120
               

               
Conread position:
               
158-630
               

               
Cow position:
               
chr4:20327527-20327983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 11
               

               
Conread position:
               
158-630
               

               
Cow position:
               
chr4:31023646-31023177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 12
               

               
Conread position:
               
159-434
               

               
Cow position:
               
chr4:59001941-59002213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
70, 161
               

               
Conread position:
               
159-452
               

               
Cow position:
               
chr4:46566275-46566572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
102, 11
               

               
Conread position:
               
159-464
               

               
Cow position:
               
chr4:2774920-2774608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
91, 242
               

               
Conread position:
               
159-477
               

               
Cow position:
               
chr4:22546647-22546959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
159-480
               

               
Cow position:
               
chr4:19430556-19430236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
59, 31
               

               
Conread position:
               
159-480
               

               
Cow position:
               
chr4:52780042-52779727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 31
               

               
Conread position:
               
159-493
               

               
Cow position:
               
chr4:19500890-19501223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
12, 55
               

               
Conread position:
               
159-565
               

               
Cow position:
               
chr4:28839807-28839422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
43, 48
               

               
Conread position:
               
159-567
               

               
Cow position:
               
chr4:16762522-16762937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
43, 243
               

               
Conread position:
               
159-568
               

               
Cow position:
               
chr4:59277277-59277686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
72, 165
               

               
Conread position:
               
159-589
               

               
Cow position:
               
chr4:22860532-22860933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
166, 10
               

               
Conread position:
               
159-591
               

               
Cow position:
               
chr4:10999514-10999933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
73, 11
               

               
Conread position:
               
159-606
               

               
Cow position:
               
chr4:34383142-34383581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 11
               

               
Conread position:
               
159-607
               

               
Cow position:
               
chr4:54455149-54455589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
45, 118
               

               
Conread position:
               
159-624
               

               
Cow position:
               
chr4:30974530-30974075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 13
               

               
Conread position:
               
159-625
               

               
Cow position:
               
chr4:66547566-66548016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 290
               

               
Conread position:
               
159-626
               

               
Cow position:
               
chr4:22249272-22249707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
220, 11
               

               
Conread position:
               
159-626
               

               
Cow position:
               
chr4:45589398-45589848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
159-630
               

               
Cow position:
               
chr4:3688124-3687660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
98, 10
               

               
Conread position:
               
159-630
               

               
Cow position:
               
chr4:7430507-7430051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
12, 37
               

               
Conread position:
               
159-636
               

               
Cow position:
               
chr4:68076345-68076802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
61, 10
               

               
Conread position:
               
159-643
               

               
Cow position:
               
chr4:23509791-23509308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 43
               

               
Conread position:
               
160-369
               

               
Cow position:
               
chr4:8083612-8083812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
186, 70
               

               
Conread position:
               
160-389
               

               
Cow position:
               
chr4:46883471-46883706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
160-630
               

               
Cow position:
               
chr4:21391623-21392072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
235, 30
               

               
Conread position:
               
160-630
               

               
Cow position:
               
chr4:22009866-22010326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
235, 55
               

               
Conread position:
               
160-630
               

               
Cow position:
               
chr4:32259643-32260115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 39
               

               
Conread position:
               
160-630
               

               
Cow position:
               
chr4:54191298-54190832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 201
               

               
Conread position:
               
160-630
               

               
Cow position:
               
chr4:60897093-60897541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 88
               

               
Conread position:
               
160-634
               

               
Cow position:
               
chr4:961468-961935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 78
               

               
Conread position:
               
160-659
               

               
Cow position:
               
chr4:52748266-52748756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 46
               

               
Conread position:
               
161-361
               

               
Cow position:
               
chr4:56410540-56410340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
70, 117
               

               
Conread position:
               
161-370
               

               
Cow position:
               
chr4:19496695-19496480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
161-389
               

               
Cow position:
               
chr4:67393290-67393061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
71, 215
               

               
Conread position:
               
161-398
               

               
Cow position:
               
chr4:42231838-42232065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
161-399
               

               
Cow position:
               
chr4:35638711-35638947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
223, 23
               

               
Conread position:
               
161-433
               

               
Cow position:
               
chr4:45706232-45705967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
161-447
               

               
Cow position:
               
chr4:19102681-19102977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 213
               

               
Conread position:
               
161-447
               

               
Cow position:
               
chr4:45626447-45626714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
161-449
               

               
Cow position:
               
chr4:20142716-20143002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
55, 43
               

               
Conread position:
               
161-452
               

               
Cow position:
               
chr4:21063611-21063881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
19, 66
               

               
Conread position:
               
161-457
               

               
Cow position:
               
chr4:44183925-44184213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 59
               

               
Conread position:
               
161-472
               

               
Cow position:
               
chr4:45725060-45724759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
9, 71
               

               
Conread position:
               
161-480
               

               
Cow position:
               
chr4:37732284-37732609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
161-480
               

               
Cow position:
               
chr4:53126292-53125993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
161-481
               

               
Cow position:
               
chr4:45012958-45013290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
71, 192
               

               
Conread position:
               
161-490
               

               
Cow position:
               
chr4:21874373-21874038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
70, 117
               

               
Conread position:
               
161-493
               

               
Cow position:
               
chr4:16881178-16881502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
71, 32
               

               
Conread position:
               
161-535
               

               
Cow position:
               
chr4:32458661-32459038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
70, 328
               

               
Conread position:
               
161-562
               

               
Cow position:
               
chr4:27344487-27344871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
124, 67
               

               
Conread position:
               
161-567
               

               
Cow position:
               
chr4:29384046-29384424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 69
               

               
Conread position:
               
161-568
               

               
Cow position:
               
chr4:36929487-36929107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 20
               

               
Conread position:
               
161-568
               

               
Cow position:
               
chr4:51769300-51768906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 100
               

               
Conread position:
               
161-586
               

               
Cow position:
               
chr4:13221985-13222400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
49, 183
               

               
Conread position:
               
161-617
               

               
Cow position:
               
chr4:12676990-12676558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 94
               

               
Conread position:
               
161-623
               

               
Cow position:
               
chr4:27997871-27997424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 51
               

               
Conread position:
               
161-624
               

               
Cow position:
               
chr4:11187646-11187195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
71, 15
               

               
Conread position:
               
161-624
               

               
Cow position:
               
chr4:34641528-34641991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 117
               

               
Conread position:
               
161-626
               

               
Cow position:
               
chr4:46061143-46060682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 114
               

               
Conread position:
               
161-630
               

               
Cow position:
               
chr4:12591025-12591479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 15
               

               
Conread position:
               
161-630
               

               
Cow position:
               
chr4:40414431-40414899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 71
               

               
Conread position:
               
161-630
               

               
Cow position:
               
chr4:62472275-62471800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 46
               

               
Conread position:
               
161-631
               

               
Cow position:
               
chr4:25370289-25369847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 69
               

               
Conread position:
               
161-631
               

               
Cow position:
               
chr4:28151705-28151260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
229, 68
               

               
Conread position:
               
161-631
               

               
Cow position:
               
chr4:68234158-68233710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
70, 28
               

               
Conread position:
               
161-634
               

               
Cow position:
               
chr4:49794845-49794407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 70
               

               
Conread position:
               
161-637
               

               
Cow position:
               
chr4:53208479-53208026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
11, 71
               

               
Conread position:
               
161-638
               

               
Cow position:
               
chr4:31136950-31136479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
65, 98
               

               
Conread position:
               
161-639
               

               
Cow position:
               
chr4:27276350-27276818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 38
               

               
Conread position:
               
161-644
               

               
Cow position:
               
chr4:3837463-3836994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 59
               

               
Conread position:
               
161-646
               

               
Cow position:
               
chr4:4084262-4084730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 70
               

               
Conread position:
               
161-646
               

               
Cow position:
               
chr4:51123249-51122773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 78
               

               
Conread position:
               
162-326
               

               
Cow position:
               
chr4:51617802-51617969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
69, 97
               

               
Conread position:
               
162-351
               

               
Cow position:
               
chr4:39010247-39010054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
70, 17
               

               
Conread position:
               
162-390
               

               
Cow position:
               
chr4:31758446-31758234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
162-443
               

               
Cow position:
               
chr4:63471896-63472162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
162-447
               

               
Cow position:
               
chr4:44772845-44773138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
70, 119
               

               
Conread position:
               
162-470
               

               
Cow position:
               
chr4:9925445-9925741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
162-509
               

               
Cow position:
               
chr4:41370747-41371101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 92
               

               
Conread position:
               
162-560
               

               
Cow position:
               
chr4:43515917-43515524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 175
               

               
Conread position:
               
162-624
               

               
Cow position:
               
chr4:19584908-19584442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 179
               

               
Conread position:
               
162-626
               

               
Cow position:
               
chr4:34210231-34209762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
28, 45
               

               
Conread position:
               
162-630
               

               
Cow position:
               
chr4:38999610-38999159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
89, 25
               

               
Conread position:
               
162-634
               

               
Cow position:
               
chr4:7704122-7704579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 283
               

               
Conread position:
               
162-634
               

               
Cow position:
               
chr4:19315813-19316269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 168
               

               
Conread position:
               
162-634
               

               
Cow position:
               
chr4:58834223-58834678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 36
               

               
Conread position:
               
162-636
               

               
Cow position:
               
chr4:24371668-24372125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
70, 10
               

               
Conread position:
               
162-636
               

               
Cow position:
               
chr4:58248599-58248135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 172
               

               
Conread position:
               
162-639
               

               
Cow position:
               
chr4:3440587-3440129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 69
               

               
Conread position:
               
162-646
               

               
Cow position:
               
chr4:16238975-16239419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 68
               

               
Conread position:
               
163-359
               

               
Cow position:
               
chr4:30769225-30769032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
163-388
               

               
Cow position:
               
chr4:7698458-7698234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
152, 145
               

               
Conread position:
               
163-389
               

               
Cow position:
               
chr4:38350001-38350233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
163-405
               

               
Cow position:
               
chr4:61608775-61609014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
99, 31
               

               
Conread position:
               
163-425
               

               
Cow position:
               
chr4:62370502-62370246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
227, 91
               

               
Conread position:
               
163-427
               

               
Cow position:
               
chr4:19199090-19199363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
163-444
               

               
Cow position:
               
chr4:19292907-19292631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
27, 69
               

               
Conread position:
               
163-454
               

               
Cow position:
               
chr4:32693981-32693685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
163-463
               

               
Cow position:
               
chr4:61066946-61066666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
227, 65
               

               
Conread position:
               
163-493
               

               
Cow position:
               
chr4:45685646-45685329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
163-588
               

               
Cow position:
               
chr4:56591235-56590804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 165
               

               
Conread position:
               
163-622
               

               
Cow position:
               
chr4:51407768-51408225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
73, 62
               

               
Conread position:
               
163-626
               

               
Cow position:
               
chr4:22101068-22101531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 230
               

               
Conread position:
               
163-629
               

               
Cow position:
               
chr4:31004219-31004672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
464, 65
               

               
Conread position:
               
163-630
               

               
Cow position:
               
chr4:570981-570532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
229, 47
               

               
Conread position:
               
163-630
               

               
Cow position:
               
chr4:51899214-51898734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
33, 214
               

               
Conread position:
               
163-636
               

               
Cow position:
               
chr4:13668425-13668890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
69, 325
               

               
Conread position:
               
164-630
               

               
Cow position:
               
chr4:13326760-13327226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 17
               

               
Conread position:
               
166-358
               

               
Cow position:
               
chr4:22482510-22482320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 66
               

               
Conread position:
               
166-485
               

               
Cow position:
               
chr4:52831825-52832149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
65, 179
               

               
Conread position:
               
166-505
               

               
Cow position:
               
chr4:29805179-29805522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 169
               

               
Conread position:
               
166-542
               

               
Cow position:
               
chr4:3421814-3421444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
65, 276
               

               
Conread position:
               
166-625
               

               
Cow position:
               
chr4:24197598-24198057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
86, 14
               

               
Conread position:
               
166-626
               

               
Cow position:
               
chr4:4320804-4321270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 7
               

               
Conread position:
               
166-626
               

               
Cow position:
               
chr4:46527194-46526735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
66, 94
               

               
Conread position:
               
166-636
               

               
Cow position:
               
chr4:508722-509172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 38
               

               
Conread position:
               
167-470
               

               
Cow position:
               
chr4:46494490-46494181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
84, 35
               

               
Conread position:
               
168-493
               

               
Cow position:
               
chr4:45076891-45077213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
230, 61
               

               
Conread position:
               
168-626
               

               
Cow position:
               
chr4:59785508-59785052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 87
               

               
Conread position:
               
169-336
               

               
Cow position:
               
chr4:40392998-40392835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
169-389
               

               
Cow position:
               
chr4:43542295-43542504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
169-401
               

               
Cow position:
               
chr4:60363538-60363304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
62, 7
               

               
Conread position:
               
169-402
               

               
Cow position:
               
chr4:20124781-20125014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
147, 85
               

               
Conread position:
               
169-430
               

               
Cow position:
               
chr4:8182447-8182715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 21
               

               
Conread position:
               
169-449
               

               
Cow position:
               
chr4:19573476-19573193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
63, 214
               

               
Conread position:
               
169-459
               

               
Cow position:
               
chr4:48104378-48104669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
65, 226
               

               
Conread position:
               
169-470
               

               
Cow position:
               
chr4:45636359-45636049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
56, 35
               

               
Conread position:
               
169-477
               

               
Cow position:
               
chr4:54767203-54767510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
144, 60
               

               
Conread position:
               
169-479
               

               
Cow position:
               
chr4:59873613-59873307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
169-490
               

               
Cow position:
               
chr4:45250160-45249840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
63, 33
               

               
Conread position:
               
169-493
               

               
Cow position:
               
chr4:48409098-48409405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
230, 62
               

               
Conread position:
               
169-493
               

               
Cow position:
               
chr4:68569457-68569792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
63, 91
               

               
Conread position:
               
169-497
               

               
Cow position:
               
chr4:85881-85547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
113, 68
               

               
Conread position:
               
169-505
               

               
Cow position:
               
chr4:52823215-52823557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
161, 214
               

               
Conread position:
               
169-528
               

               
Cow position:
               
chr4:20147372-20147016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 231
               

               
Conread position:
               
169-528
               

               
Cow position:
               
chr4:34369278-34369622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
27, 12
               

               
Conread position:
               
169-534
               

               
Cow position:
               
chr4:17186161-17186528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
33, 90
               

               
Conread position:
               
169-534
               

               
Cow position:
               
chr4:27632628-27632278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
63, 30
               

               
Conread position:
               
169-535
               

               
Cow position:
               
chr4:31505831-31506208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
77, 135
               

               
Conread position:
               
169-588
               

               
Cow position:
               
chr4:3388729-3388318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
63, 22
               

               
Conread position:
               
169-588
               

               
Cow position:
               
chr4:36290809-36290381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
308, 85
               

               
Conread position:
               
169-593
               

               
Cow position:
               
chr4:4318967-4319382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
113, 63
               

               
Conread position:
               
169-605
               

               
Cow position:
               
chr4:12127452-12127886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 217
               

               
Conread position:
               
169-606
               

               
Cow position:
               
chr4:25227121-25226689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
221, 62
               

               
Conread position:
               
169-607
               

               
Cow position:
               
chr4:11897115-11897544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 145
               

               
Conread position:
               
169-608
               

               
Cow position:
               
chr4:26659487-26659059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
135, 247
               

               
Conread position:
               
169-616
               

               
Cow position:
               
chr4:11099474-11099922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
63, 30
               

               
Conread position:
               
169-619
               

               
Cow position:
               
chr4:45582935-45583385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 36
               

               
Conread position:
               
169-620
               

               
Cow position:
               
chr4:47731051-47730604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 288
               

               
Conread position:
               
169-622
               

               
Cow position:
               
chr4:656621-657079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 109
               

               
Conread position:
               
169-623
               

               
Cow position:
               
chr4:34310278-34310716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
119, 24
               

               
Conread position:
               
169-624
               

               
Cow position:
               
chr4:9444495-9444951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
62, 332
               

               
Conread position:
               
169-625
               

               
Cow position:
               
chr4:23444851-23445314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 125
               

               
Conread position:
               
169-626
               

               
Cow position:
               
chr4:4084921-4085400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 344
               

               
Conread position:
               
169-626
               

               
Cow position:
               
chr4:22073130-22073573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
63, 175
               

               
Conread position:
               
169-626
               

               
Cow position:
               
chr4:23846867-23847315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 61
               

               
Conread position:
               
169-626
               

               
Cow position:
               
chr4:35982185-35981725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 117
               

               
Conread position:
               
169-626
               

               
Cow position:
               
chr4:43894622-43895067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
63, 155
               

               
Conread position:
               
169-626
               

               
Cow position:
               
chr4:56239677-56240109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
370, 24
               

               
Conread position:
               
169-628
               

               
Cow position:
               
chr4:66256866-66256419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
131, 25
               

               
Conread position:
               
169-629
               

               
Cow position:
               
chr4:65825637-65826122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
91, 137
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr4:202956-203416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
81, 37
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr4:15635264-15635711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
227, 19
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr4:22138029-22138504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 344
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr4:23450903-23451364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 318
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr4:37915151-37915597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 63
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr4:45662329-45662768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 24
               

               
Conread position:
               
169-630
               

               
Cow position:
               
chr4:51728261-51727815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
179, 64
               

               
Conread position:
               
169-631
               

               
Cow position:
               
chr4:1985838-1985380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
62, 281
               

               
Conread position:
               
169-631
               

               
Cow position:
               
chr4:49158605-49159049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
63, 212
               

               
Conread position:
               
169-633
               

               
Cow position:
               
chr4:29291693-29291251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 60
               

               
Conread position:
               
169-634
               

               
Cow position:
               
chr4:31348013-31348466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 77
               

               
Conread position:
               
169-634
               

               
Cow position:
               
chr4:59871667-59871226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 7
               

               
Conread position:
               
169-636
               

               
Cow position:
               
chr4:15871554-15871996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
120, 62
               

               
Conread position:
               
169-650
               

               
Cow position:
               
chr4:27530299-27529824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 28
               

               
Conread position:
               
169-652
               

               
Cow position:
               
chr4:28771883-28772357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
222, 14
               

               
Conread position:
               
169-658
               

               
Cow position:
               
chr4:41867635-41867144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
63, 154
               

               
Conread position:
               
169-659
               

               
Cow position:
               
chr4:19745057-19744589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
33, 63
               

               
Conread position:
               
170-382
               

               
Cow position:
               
chr4:46560365-46560154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
108, 62
               

               
Conread position:
               
170-468
               

               
Cow position:
               
chr4:13026480-13026189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 53
               

               
Conread position:
               
170-480
               

               
Cow position:
               
chr4:38946405-38946083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
62, 167
               

               
Conread position:
               
170-482
               

               
Cow position:
               
chr4:1419410-1419094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
121, 57
               

               
Conread position:
               
170-484
               

               
Cow position:
               
chr4:11611050-11610749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
59, 40
               

               
Conread position:
               
170-493
               

               
Cow position:
               
chr4:15439772-15439439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
62, 111
               

               
Conread position:
               
170-493
               

               
Cow position:
               
chr4:18756623-18756294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 26
               

               
Conread position:
               
170-524
               

               
Cow position:
               
chr4:19407805-19408169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 50
               

               
Conread position:
               
170-568
               

               
Cow position:
               
chr4:38944072-38944471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
227, 168
               

               
Conread position:
               
170-609
               

               
Cow position:
               
chr4:8801675-8801259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
223, 86
               

               
Conread position:
               
170-624
               

               
Cow position:
               
chr4:34631093-34630640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 312
               

               
Conread position:
               
170-628
               

               
Cow position:
               
chr4:56570977-56570539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
301, 61
               

               
Conread position:
               
170-630
               

               
Cow position:
               
chr4:13590273-13589823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
62, 111
               

               
Conread position:
               
170-630
               

               
Cow position:
               
chr4:44496548-44496116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 60
               

               
Conread position:
               
170-634
               

               
Cow position:
               
chr4:25197304-25197769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 251
               

               
Conread position:
               
171-459
               

               
Cow position:
               
chr4:24092946-24093244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
171-478
               

               
Cow position:
               
chr4:5580724-5580436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
224, 8
               

               
Conread position:
               
171-478
               

               
Cow position:
               
chr4:12474036-12473727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
45, 140
               

               
Conread position:
               
171-485
               

               
Cow position:
               
chr4:54789828-54789509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
171-564
               

               
Cow position:
               
chr4:13344721-13344339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
219, 61
               

               
Conread position:
               
171-566
               

               
Cow position:
               
chr4:13284569-13284172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
45, 140
               

               
Conread position:
               
171-568
               

               
Cow position:
               
chr4:24810266-24810649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
31, 62
               

               
Conread position:
               
171-629
               

               
Cow position:
               
chr4:51851398-51850928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
6, 258
               

               
Conread position:
               
171-630
               

               
Cow position:
               
chr4:37343305-37342849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
222, 60
               

               
Conread position:
               
171-637
               

               
Cow position:
               
chr4:10915647-10916112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
61, 42
               

               
Conread position:
               
171-637
               

               
Cow position:
               
chr4:48152187-48152644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
61, 25
               

               
Conread position:
               
173-621
               

               
Cow position:
               
chr4:12913606-12914060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
93, 24
               

               
Conread position:
               
173-622
               

               
Cow position:
               
chr4:10732404-10731959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 60
               

               
Conread position:
               
174-624
               

               
Cow position:
               
chr4:68387971-68387530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
23, 58
               

               
Conread position:
               
176-490
               

               
Cow position:
               
chr4:34165806-34166114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
173, 61
               

               
Conread position:
               
176-493
               

               
Cow position:
               
chr4:2099812-2099494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
24, 11
               

               
Conread position:
               
176-568
               

               
Cow position:
               
chr4:68764699-68764309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
55, 120
               

               
Conread position:
               
176-630
               

               
Cow position:
               
chr4:23646690-23647111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 53
               

               
Conread position:
               
177-425
               

               
Cow position:
               
chr4:33181723-33181464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
55, 25
               

               
Conread position:
               
177-512
               

               
Cow position:
               
chr4:4827312-4826967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
43, 237
               

               
Conread position:
               
177-598
               

               
Cow position:
               
chr4:26323923-26323497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
55, 301
               

               
Conread position:
               
177-607
               

               
Cow position:
               
chr4:21531461-21531886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
55, 155
               

               
Conread position:
               
177-630
               

               
Cow position:
               
chr4:45775151-45775609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 297
               

               
Conread position:
               
177-644
               

               
Cow position:
               
chr4:63349296-63349756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 54
               

               
Conread position:
               
178-470
               

               
Cow position:
               
chr4:16513349-16513635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
151, 76
               

               
Conread position:
               
178-547
               

               
Cow position:
               
chr4:22713317-22713680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
149, 42
               

               
Conread position:
               
179-479
               

               
Cow position:
               
chr4:54171802-54171503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
263, 77
               

               
Conread position:
               
179-636
               

               
Cow position:
               
chr4:1060102-1060536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
295, 77
               

               
Conread position:
               
181-628
               

               
Cow position:
               
chr4:65116037-65116477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
52, 105
               

               
Conread position:
               
182-630
               

               
Cow position:
               
chr4:42423631-42424069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 244
               

               
Conread position:
               
187-630
               

               
Cow position:
               
chr4:12004387-12003955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 147
               

               
Conread position:
               
194-442
               

               
Cow position:
               
chr4:61188704-61188957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
55, 83
               

               
Conread position:
               
194-493
               

               
Cow position:
               
chr4:37313333-37313031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
52, 142
               

               
Conread position:
               
195-432
               

               
Cow position:
               
chr4:34562542-34562302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
151, 162
               

               
Conread position:
               
197-653
               

               
Cow position:
               
chr4:25888684-25889125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 34
               

               
Conread position:
               
198-601
               

               
Cow position:
               
chr4:6653882-6653496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
51, 69
               

               
Conread position:
               
206-630
               

               
Cow position:
               
chr4:17052443-17052866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
184, 304
               

               
Conread position:
               
207-644
               

               
Cow position:
               
chr4:46455916-46456329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 127
               

               
Conread position:
               
212-535
               

               
Cow position:
               
chr4:33096841-33097152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
160, 19
               

               
Conread position:
               
230-626
               

               
Cow position:
               
chr4:396056-395686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
90, 25
               

               
Conread position:
               
233-644
               

               
Cow position:
               
chr4:61624466-61624872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 22
               

               
Conread position:
               
234-633
               

               
Cow position:
               
chr4:38952679-38952288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
18, 264
               

               
Conread position:
               
235-630
               

               
Cow position:
               
chr4:3850672-3850285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
304, 230
               

               
Conread position:
               
238-617
               

               
Cow position:
               
chr4:49089892-49089539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
301, 20
               

               
Conread position:
               
239-463
               

               
Cow position:
               
chr4:45595916-45596138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
63, 16
               

               
Conread position:
               
240-568
               

               
Cow position:
               
chr4:9681422-9681095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 267
               

               
Conread position:
               
240-624
               

               
Cow position:
               
chr4:35870319-35869953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 16
               

               
Conread position:
               
240-626
               

               
Cow position:
               
chr4:32726340-32725960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 157
               

               
Conread position:
               
241-633
               

               
Cow position:
               
chr4:63459108-63459486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
41, 32
               

               
Conread position:
               
242-631
               

               
Cow position:
               
chr4:27755190-27755576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 69
               

               
Conread position:
               
244-450
               

               
Cow position:
               
chr4:65265194-65265406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
127, 133
               

               
Conread position:
               
244-452
               

               
Cow position:
               
chr4:9199073-9198869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
46, 20
               

               
Conread position:
               
244-614
               

               
Cow position:
               
chr4:2602342-2601977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 33
               

               
Conread position:
               
244-626
               

               
Cow position:
               
chr4:45738363-45738746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 235
               

               
Conread position:
               
244-631
               

               
Cow position:
               
chr4:33433146-33433527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
147, 18
               

               
Conread position:
               
245-471
               

               
Cow position:
               
chr4:37675724-37675499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
153, 85
               

               
Conread position:
               
245-633
               

               
Cow position:
               
chr4:19321967-19322350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 257
               

               
Conread position:
               
246-436
               

               
Cow position:
               
chr4:5963880-5964069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
95, 21
               

               
Conread position:
               
246-526
               

               
Cow position:
               
chr4:10379221-10378941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
43, 246
               

               
Conread position:
               
246-574
               

               
Cow position:
               
chr4:58858059-58858374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
151, 87
               

               
Conread position:
               
246-608
               

               
Cow position:
               
chr4:37502922-37502575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
210, 80
               

               
Conread position:
               
246-626
               

               
Cow position:
               
chr4:11871812-11872176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
37, 28
               

               
Conread position:
               
246-646
               

               
Cow position:
               
chr4:51784289-51783896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 79
               

               
Conread position:
               
247-386
               

               
Cow position:
               
chr4:51920653-51920514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
247-440
               

               
Cow position:
               
chr4:19098581-19098380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
247-468
               

               
Cow position:
               
chr4:22725199-22724991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
128, 82
               

               
Conread position:
               
247-470
               

               
Cow position:
               
chr4:11380388-11380169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
203, 90
               

               
Conread position:
               
247-479
               

               
Cow position:
               
chr4:47280236-47280015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
247-479
               

               
Cow position:
               
chr4:65950763-65950531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
153, 36
               

               
Conread position:
               
247-487
               

               
Cow position:
               
chr4:24481564-24481797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
107, 30
               

               
Conread position:
               
247-490
               

               
Cow position:
               
chr4:59378018-59377778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
143, 173
               

               
Conread position:
               
247-497
               

               
Cow position:
               
chr4:13941565-13941316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
224, 83
               

               
Conread position:
               
247-507
               

               
Cow position:
               
chr4:61313104-61313362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
234, 144
               

               
Conread position:
               
247-567
               

               
Cow position:
               
chr4:30792077-30791759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
151, 116
               

               
Conread position:
               
247-575
               

               
Cow position:
               
chr4:13973861-13974183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 144
               

               
Conread position:
               
247-603
               

               
Cow position:
               
chr4:28836643-28836285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
143, 48
               

               
Conread position:
               
247-619
               

               
Cow position:
               
chr4:25879499-25879139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 81
               

               
Conread position:
               
247-623
               

               
Cow position:
               
chr4:63095965-63096336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
35, 26
               

               
Conread position:
               
247-626
               

               
Cow position:
               
chr4:19700204-19699835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
230, 83
               

               
Conread position:
               
247-628
               

               
Cow position:
               
chr4:45644210-45644579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
35, 21
               

               
Conread position:
               
247-629
               

               
Cow position:
               
chr4:39231411-39231790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 15
               

               
Conread position:
               
247-629
               

               
Cow position:
               
chr4:44782483-44782107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 95
               

               
Conread position:
               
247-630
               

               
Cow position:
               
chr4:19542241-19541858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
181, 90
               

               
Conread position:
               
247-630
               

               
Cow position:
               
chr4:28399304-28399675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 48
               

               
Conread position:
               
247-630
               

               
Cow position:
               
chr4:43865748-43866119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
150, 105
               

               
Conread position:
               
247-634
               

               
Cow position:
               
chr4:41300889-41301265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 26
               

               
Conread position:
               
247-636
               

               
Cow position:
               
chr4:46013-45644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
292, 52
               

               
Conread position:
               
247-644
               

               
Cow position:
               
chr4:48173245-48172831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
234, 169
               

               
Conread position:
               
247-652
               

               
Cow position:
               
chr4:41185811-41186192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
137, 72
               

               
Conread position:
               
248-389
               

               
Cow position:
               
chr4:38700049-38700190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
248-455
               

               
Cow position:
               
chr4:47510490-47510290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
66, 8
               

               
Conread position:
               
248-459
               

               
Cow position:
               
chr4:1890657-1890859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
33, 67
               

               
Conread position:
               
248-594
               

               
Cow position:
               
chr4:37344322-37344665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
152, 8
               

               
Conread position:
               
248-598
               

               
Cow position:
               
chr4:45367847-45367497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
149, 237
               

               
Conread position:
               
248-626
               

               
Cow position:
               
chr4:26401063-26400693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 72
               

               
Conread position:
               
248-626
               

               
Cow position:
               
chr4:55395867-55395504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
148, 8
               

               
Conread position:
               
249-487
               

               
Cow position:
               
chr4:5913240-5913482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
141, 77
               

               
Conread position:
               
249-493
               

               
Cow position:
               
chr4:52088032-52087796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
141, 62
               

               
Conread position:
               
249-496
               

               
Cow position:
               
chr4:39617071-39616850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
249-502
               

               
Cow position:
               
chr4:51605507-51605755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
132, 27
               

               
Conread position:
               
249-504
               

               
Cow position:
               
chr4:24497723-24497968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
206, 48
               

               
Conread position:
               
249-543
               

               
Cow position:
               
chr4:23758909-23758619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
130, 50
               

               
Conread position:
               
249-545
               

               
Cow position:
               
chr4:50769659-50769951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
73, 50
               

               
Conread position:
               
249-559
               

               
Cow position:
               
chr4:23167008-23166704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
56, 50
               

               
Conread position:
               
249-567
               

               
Cow position:
               
chr4:39767455-39767140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
133, 37
               

               
Conread position:
               
249-571
               

               
Cow position:
               
chr4:27371757-27372068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
122, 55
               

               
Conread position:
               
249-588
               

               
Cow position:
               
chr4:36945088-36945418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
136, 55
               

               
Conread position:
               
249-624
               

               
Cow position:
               
chr4:31172778-31172404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
144, 60
               

               
Conread position:
               
249-625
               

               
Cow position:
               
chr4:54146361-54146738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
56, 61
               

               
Conread position:
               
249-630
               

               
Cow position:
               
chr4:65841661-65842026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
144, 18
               

               
Conread position:
               
249-631
               

               
Cow position:
               
chr4:243337-242957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 52
               

               
Conread position:
               
249-631
               

               
Cow position:
               
chr4:10992095-10992469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
24, 29
               

               
Conread position:
               
249-631
               

               
Cow position:
               
chr4:18095567-18095945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
34, 28
               

               
Conread position:
               
249-644
               

               
Cow position:
               
chr4:20279434-20279056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
165, 55
               

               
Conread position:
               
249-647
               

               
Cow position:
               
chr4:21365508-21365129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
134, 28
               

               
Conread position:
               
249-659
               

               
Cow position:
               
chr4:45234766-45235157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 140
               

               
Conread position:
               
250-452
               

               
Cow position:
               
chr4:54920984-54921184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
19, 81
               

               
Conread position:
               
250-493
               

               
Cow position:
               
chr4:33091479-33091240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
18, 31
               

               
Conread position:
               
250-493
               

               
Cow position:
               
chr4:36577521-36577769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
250-528
               

               
Cow position:
               
chr4:69543288-69543009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
254, 217
               

               
Conread position:
               
250-588
               

               
Cow position:
               
chr4:8705100-8704758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
19, 31
               

               
Conread position:
               
250-618
               

               
Cow position:
               
chr4:20157311-20157669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
140, 53
               

               
Conread position:
               
250-625
               

               
Cow position:
               
chr4:25973003-25972636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
138, 49
               

               
Conread position:
               
250-626
               

               
Cow position:
               
chr4:10056310-10055947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
250-630
               

               
Cow position:
               
chr4:39128643-39128261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 52
               

               
Conread position:
               
250-631
               

               
Cow position:
               
chr4:44451626-44451261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 120
               

               
Conread position:
               
250-636
               

               
Cow position:
               
chr4:36893465-36893079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 164
               

               
Conread position:
               
250-640
               

               
Cow position:
               
chr4:23526799-23526419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 27
               

               
Conread position:
               
250-644
               

               
Cow position:
               
chr4:22115710-22115324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 49
               

               
Conread position:
               
250-644
               

               
Cow position:
               
chr4:23065675-23066050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
203, 54
               

               
Conread position:
               
251-451
               

               
Cow position:
               
chr4:45563851-45563646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
46, 127
               

               
Conread position:
               
251-478
               

               
Cow position:
               
chr4:65175040-65175261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
251-493
               

               
Cow position:
               
chr4:54524239-54524469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
5, 46
               

               
Conread position:
               
251-566
               

               
Cow position:
               
chr4:21017-20712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
229, 143
               

               
Conread position:
               
251-567
               

               
Cow position:
               
chr4:16594187-16593878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 92
               

               
Conread position:
               
251-607
               

               
Cow position:
               
chr4:63964886-63965236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
139, 59
               

               
Conread position:
               
251-626
               

               
Cow position:
               
chr4:46597473-46597119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
141, 78
               

               
Conread position:
               
251-630
               

               
Cow position:
               
chr4:5460757-5461121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
132, 22
               

               
Conread position:
               
251-630
               

               
Cow position:
               
chr4:36731295-36730922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 132
               

               
Conread position:
               
251-644
               

               
Cow position:
               
chr4:46591772-46591380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 253
               

               
Conread position:
               
252-620
               

               
Cow position:
               
chr4:21874906-21874573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 138
               

               
Conread position:
               
252-625
               

               
Cow position:
               
chr4:65650030-65650388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
229, 101
               

               
Conread position:
               
255-479
               

               
Cow position:
               
chr4:46183514-46183286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
255-625
               

               
Cow position:
               
chr4:37935184-37935544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 245
               

               
Conread position:
               
255-634
               

               
Cow position:
               
chr4:65919709-65919346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
222, 75
               

               
Conread position:
               
256-625
               

               
Cow position:
               
chr4:68795194-68795568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
115, 50
               

               
Conread position:
               
256-626
               

               
Cow position:
               
chr4:54937995-54937622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
32, 21
               

               
Conread position:
               
256-634
               

               
Cow position:
               
chr4:45919133-45918759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
32, 17
               

               
Conread position:
               
257-602
               

               
Cow position:
               
chr4:65824508-65824165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
148, 81
               

               
Conread position:
               
258-479
               

               
Cow position:
               
chr4:48143936-48143706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
148, 132
               

               
Conread position:
               
258-483
               

               
Cow position:
               
chr4:45074157-45073936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
149, 72
               

               
Conread position:
               
258-490
               

               
Cow position:
               
chr4:25537645-25537409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
65, 31
               

               
Conread position:
               
258-490
               

               
Cow position:
               
chr4:45711461-45711233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
221, 110
               

               
Conread position:
               
258-607
               

               
Cow position:
               
chr4:42921762-42922091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
24, 16
               

               
Conread position:
               
258-630
               

               
Cow position:
               
chr4:12903919-12903550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
106, 238
               

               
Conread position:
               
258-633
               

               
Cow position:
               
chr4:47348924-47348561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 70
               

               
Conread position:
               
259-630
               

               
Cow position:
               
chr4:8413026-8413378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
23, 15
               

               
Conread position:
               
259-637
               

               
Cow position:
               
chr4:62771822-62772210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 259
               

               
Conread position:
               
260-608
               

               
Cow position:
               
chr4:61897434-61897785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
13, 160
               

               
Conread position:
               
260-647
               

               
Cow position:
               
chr4:11021556-11021936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 9
               

               
Conread position:
               
261-630
               

               
Cow position:
               
chr4:17111779-17112145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
132, 62
               

               
Conread position:
               
264-564
               

               
Cow position:
               
chr4:29106998-29106697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
126, 9
               

               
Conread position:
               
264-650
               

               
Cow position:
               
chr4:33395606-33395977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 166
               

               
Conread position:
               
265-630
               

               
Cow position:
               
chr4:34171491-34171837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
207, 98
               

               
Conread position:
               
268-619
               

               
Cow position:
               
chr4:59008267-59008626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
105, 177
               

               
Conread position:
               
268-630
               

               
Cow position:
               
chr4:19314100-19313737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 240
               

               
Conread position:
               
268-644
               

               
Cow position:
               
chr4:33030637-33030279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
124, 31
               

               
Conread position:
               
269-630
               

               
Cow position:
               
chr4:28377580-28377917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
121, 18
               

               
Conread position:
               
270-485
               

               
Cow position:
               
chr4:59101426-59101647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
270-626
               

               
Cow position:
               
chr4:488337-488705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
118, 67
               

               
Conread position:
               
270-630
               

               
Cow position:
               
chr4:55270683-55271027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
240, 103
               

               
Conread position:
               
272-493
               

               
Cow position:
               
chr4:4843160-4843386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
272-616
               

               
Cow position:
               
chr4:65432234-65431890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 202
               

               
Conread position:
               
273-490
               

               
Cow position:
               
chr4:2885457-2885681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
273-620
               

               
Cow position:
               
chr4:27665096-27664747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
117, 100
               

               
Conread position:
               
273-626
               

               
Cow position:
               
chr4:43148494-43148140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
121, 176
               

               
Conread position:
               
273-626
               

               
Cow position:
               
chr4:48235710-48235375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
186, 117
               

               
Conread position:
               
273-626
               

               
Cow position:
               
chr4:51903688-51903338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
123, 210
               

               
Conread position:
               
273-630
               

               
Cow position:
               
chr4:10703605-10703953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
53, 139
               

               
Conread position:
               
273-630
               

               
Cow position:
               
chr4:19008129-19007775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
117, 224
               

               
Conread position:
               
273-637
               

               
Cow position:
               
chr4:9137362-9137002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
117, 99
               

               
Conread position:
               
280-624
               

               
Cow position:
               
chr4:22344946-22345277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
77, 23
               

               
Conread position:
               
280-630
               

               
Cow position:
               
chr4:16601987-16602319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
197, 50
               

               
Conread position:
               
280-630
               

               
Cow position:
               
chr4:16799110-16799460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
115, 215
               

               
Conread position:
               
280-630
               

               
Cow position:
               
chr4:23311189-23311528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
280-650
               

               
Cow position:
               
chr4:12697713-12697360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
111, 24
               

               
Conread position:
               
281-607
               

               
Cow position:
               
chr4:21232799-21233116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
139, 116
               

               
Conread position:
               
281-628
               

               
Cow position:
               
chr4:23854255-23853938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 90
               

               
Conread position:
               
281-644
               

               
Cow position:
               
chr4:51739642-51739985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 57
               

               
Conread position:
               
282-450
               

               
Cow position:
               
chr4:51730023-51729857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
282-659
               

               
Cow position:
               
chr4:20139443-20139813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
113, 26
               

               
Conread position:
               
283-609
               

               
Cow position:
               
chr4:41602922-41602602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 136
               

               
Conread position:
               
283-629
               

               
Cow position:
               
chr4:19582545-19582883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
120, 55
               

               
Conread position:
               
285-499
               

               
Cow position:
               
chr4:44449438-44449651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
89, 45
               

               
Conread position:
               
285-567
               

               
Cow position:
               
chr4:11332168-11331883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
62, 120
               

               
Conread position:
               
285-606
               

               
Cow position:
               
chr4:4186190-4185877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
105, 53
               

               
Conread position:
               
286-619
               

               
Cow position:
               
chr4:58880891-58881223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
85, 124
               

               
Conread position:
               
286-626
               

               
Cow position:
               
chr4:33612289-33612627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 86
               

               
Conread position:
               
287-493
               

               
Cow position:
               
chr4:44973703-44973497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
179, 36
               

               
Conread position:
               
287-564
               

               
Cow position:
               
chr4:20842981-20842718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
24, 45
               

               
Conread position:
               
287-633
               

               
Cow position:
               
chr4:24744337-24744684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
86, 106
               

               
Conread position:
               
288-630
               

               
Cow position:
               
chr4:7571481-7571141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
67, 212
               

               
Conread position:
               
288-630
               

               
Cow position:
               
chr4:24001897-24002237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
83, 176
               

               
Conread position:
               
289-602
               

               
Cow position:
               
chr4:17474506-17474195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
118, 215
               

               
Conread position:
               
289-636
               

               
Cow position:
               
chr4:25806966-25806625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
107, 130
               

               
Conread position:
               
290-554
               

               
Cow position:
               
chr4:44676259-44676001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
101, 33
               

               
Conread position:
               
292-494
               

               
Cow position:
               
chr4:52307559-52307752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
184, 11
               

               
Conread position:
               
292-626
               

               
Cow position:
               
chr4:10905401-10905723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
104, 68
               

               
Conread position:
               
296-629
               

               
Cow position:
               
chr4:16339544-16339859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
298-626
               

               
Cow position:
               
chr4:29237112-29237414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
178, 16
               

               
Conread position:
               
299-477
               

               
Cow position:
               
chr4:18107103-18107280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
105, 45
               

               
Conread position:
               
299-485
               

               
Cow position:
               
chr4:57584185-57584376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
299-604
               

               
Cow position:
               
chr4:13043320-13043028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
95, 111
               

               
Conread position:
               
299-604
               

               
Cow position:
               
chr4:13256139-13255853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
173, 31
               

               
Conread position:
               
299-605
               

               
Cow position:
               
chr4:14945119-14944812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 204
               

               
Conread position:
               
299-618
               

               
Cow position:
               
chr4:49813623-49813922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
240, 91
               

               
Conread position:
               
299-622
               

               
Cow position:
               
chr4:21371448-21371140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
103, 132
               

               
Conread position:
               
299-623
               

               
Cow position:
               
chr4:51867049-51866733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
90, 36
               

               
Conread position:
               
299-626
               

               
Cow position:
               
chr4:17832844-17833169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 149
               

               
Conread position:
               
299-626
               

               
Cow position:
               
chr4:42673233-42672907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
73, 100
               

               
Conread position:
               
299-630
               

               
Cow position:
               
chr4:2894088-2893756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
91, 187
               

               
Conread position:
               
299-630
               

               
Cow position:
               
chr4:19265630-19265305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
97, 51
               

               
Conread position:
               
299-631
               

               
Cow position:
               
chr4:33421307-33421630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
17, 58
               

               
Conread position:
               
299-634
               

               
Cow position:
               
chr4:14414290-14414619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
101, 30
               

               
Conread position:
               
300-535
               

               
Cow position:
               
chr4:15784753-15784985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
96, 28
               

               
Conread position:
               
301-630
               

               
Cow position:
               
chr4:67445200-67444877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 105
               

               
Conread position:
               
302-508
               

               
Cow position:
               
chr4:38705719-38705930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
95, 28
               

               
Conread position:
               
303-621
               

               
Cow position:
               
chr4:44956129-44956448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
68, 194
               

               
Conread position:
               
304-646
               

               
Cow position:
               
chr4:15623902-15623562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
81, 98
               

               
Conread position:
               
310-626
               

               
Cow position:
               
chr4:37827803-37828099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
91, 86
               

               
Conread position:
               
311-626
               

               
Cow position:
               
chr4:15283411-15283099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
72, 106
               

               
Conread position:
               
311-630
               

               
Cow position:
               
chr4:25359643-25359337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
165, 78
               

               
Conread position:
               
311-631
               

               
Cow position:
               
chr4:52584312-52584651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
88, 26
               

               
Conread position:
               
311-636
               

               
Cow position:
               
chr4:54468258-54468570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
226, 79
               

               
Conread position:
               
312-470
               

               
Cow position:
               
chr4:7129739-7129897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
124, 24
               

               
Conread position:
               
312-630
               

               
Cow position:
               
chr4:37619843-37620155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 86
               

               
Conread position:
               
314-574
               

               
Cow position:
               
chr4:21516961-21517219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 185
               

               
Conread position:
               
314-626
               

               
Cow position:
               
chr4:5610043-5610334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
163, 76
               

               
Conread position:
               
314-630
               

               
Cow position:
               
chr4:58261108-58261421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 152
               

               
Conread position:
               
315-621
               

               
Cow position:
               
chr4:35939966-35940270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 83
               

               
Conread position:
               
315-631
               

               
Cow position:
               
chr4:14153135-14152805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
80, 23
               

               
Conread position:
               
315-644
               

               
Cow position:
               
chr4:59105784-59106093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
39, 78
               

               
Conread position:
               
316-630
               

               
Cow position:
               
chr4:17124251-17124559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
7, 190
               

               
Conread position:
               
319-630
               

               
Cow position:
               
chr4:45240312-45240005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
64, 176
               

               
Conread position:
               
320-630
               

               
Cow position:
               
chr4:63119203-63119499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
51, 74
               

               
Conread position:
               
321-550
               

               
Cow position:
               
chr4:19423415-19423196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
121, 70
               

               
Conread position:
               
321-566
               

               
Cow position:
               
chr4:28543577-28543805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
153, 64
               

               
Conread position:
               
321-619
               

               
Cow position:
               
chr4:50203789-50203490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
75, 107
               

               
Conread position:
               
321-652
               

               
Cow position:
               
chr4:14964812-14964482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
57, 10
               

               
Conread position:
               
322-452
               

               
Cow position:
               
chr4:2537226-2537095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
322-597
               

               
Cow position:
               
chr4:19463530-19463255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
69, 176
               

               
Conread position:
               
324-630
               

               
Cow position:
               
chr4:11201852-11201549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
66, 101
               

               
Conread position:
               
324-630
               

               
Cow position:
               
chr4:11671484-11671184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 74
               

               
Conread position:
               
329-624
               

               
Cow position:
               
chr4:2422603-2422320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
148, 50
               

               
Conread position:
               
331-628
               

               
Cow position:
               
chr4:2610255-2609972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 112
               

               
Conread position:
               
331-636
               

               
Cow position:
               
chr4:5984021-5984319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
141, 32
               

               
Conread position:
               
331-655
               

               
Cow position:
               
chr4:5999165-5999486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 99
               

               
Conread position:
               
331-655
               

               
Cow position:
               
chr4:13832583-13832894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
12, 26
               

               
Conread position:
               
332-628
               

               
Cow position:
               
chr4:37180876-37181170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
136, 157
               

               
Conread position:
               
332-630
               

               
Cow position:
               
chr4:14814550-14814256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
71, 45
               

               
Conread position:
               
332-630
               

               
Cow position:
               
chr4:15500474-15500770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
63, 80
               

               
Conread position:
               
332-632
               

               
Cow position:
               
chr4:47290102-47289800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
64, 169
               

               
Conread position:
               
332-644
               

               
Cow position:
               
chr4:54930395-54930698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
333-622
               

               
Cow position:
               
chr4:60370803-60371095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
57, 167
               

               
Conread position:
               
333-630
               

               
Cow position:
               
chr4:13878204-13877926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
61, 131
               

               
Conread position:
               
333-630
               

               
Cow position:
               
chr4:22051448-22051737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
69, 140
               

               
Conread position:
               
333-630
               

               
Cow position:
               
chr4:47351826-47351539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
147, 102
               

               
Conread position:
               
333-630
               

               
Cow position:
               
chr4:61972440-61972745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
141, 61
               

               
Conread position:
               
334-630
               

               
Cow position:
               
chr4:24118885-24119179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
66, 85
               

               
Conread position:
               
334-630
               

               
Cow position:
               
chr4:49424848-49424570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
63, 17
               

               
Conread position:
               
335-568
               

               
Cow position:
               
chr4:43749792-43750018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
19, 66
               

               
Conread position:
               
338-467
               

               
Cow position:
               
chr4:42253110-42253240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
338-498
               

               
Cow position:
               
chr4:26011868-26011708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
52, 68
               

               
Conread position:
               
338-605
               

               
Cow position:
               
chr4:14920012-14919756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
201, 143
               

               
Conread position:
               
338-631
               

               
Cow position:
               
chr4:53209255-53208970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
63, 83
               

               
Conread position:
               
338-644
               

               
Cow position:
               
chr4:9912748-9912446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
49, 120
               

               
Conread position:
               
339-630
               

               
Cow position:
               
chr4:10412399-10412111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
59, 110
               

               
Conread position:
               
339-636
               

               
Cow position:
               
chr4:53546044-53545755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
58, 5
               

               
Conread position:
               
340-493
               

               
Cow position:
               
chr4:47047911-47047754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
340-539
               

               
Cow position:
               
chr4:46720151-46720344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
131, 45
               

               
Conread position:
               
340-593
               

               
Cow position:
               
chr4:46501360-46501123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
340-626
               

               
Cow position:
               
chr4:20299291-20299005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
32, 70
               

               
Conread position:
               
340-626
               

               
Cow position:
               
chr4:37553025-37553308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
54, 9
               

               
Conread position:
               
340-630
               

               
Cow position:
               
chr4:19497247-19497518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
137, 80
               

               
Conread position:
               
341-479
               

               
Cow position:
               
chr4:30929617-30929477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
341-493
               

               
Cow position:
               
chr4:65538402-65538557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
341-552
               

               
Cow position:
               
chr4:42347264-42347478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 80
               

               
Conread position:
               
341-603
               

               
Cow position:
               
chr4:52166836-52167086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
60, 162
               

               
Conread position:
               
341-653
               

               
Cow position:
               
chr4:22849701-22850001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
53, 112
               

               
Conread position:
               
343-643
               

               
Cow position:
               
chr4:1405547-1405259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
5, 158
               

               
Conread position:
               
344-470
               

               
Cow position:
               
chr4:60215443-60215570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 92
               

               
Conread position:
               
344-601
               

               
Cow position:
               
chr4:27687939-27687684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
54, 156
               

               
Conread position:
               
344-605
               

               
Cow position:
               
chr4:33357948-33357688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
51, 159
               

               
Conread position:
               
344-626
               

               
Cow position:
               
chr4:22236468-22236739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
55, 16
               

               
Conread position:
               
344-630
               

               
Cow position:
               
chr4:11901549-11901831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
56, 75
               

               
Conread position:
               
344-637
               

               
Cow position:
               
chr4:479996-480282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
133, 49
               

               
Conread position:
               
345-630
               

               
Cow position:
               
chr4:38181693-38181412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
46, 115
               

               
Conread position:
               
346-569
               

               
Cow position:
               
chr4:34924680-34924900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
46, 92
               

               
Conread position:
               
346-605
               

               
Cow position:
               
chr4:65892002-65891748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
54, 126
               

               
Conread position:
               
346-622
               

               
Cow position:
               
chr4:54975306-54975048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
128, 50
               

               
Conread position:
               
346-630
               

               
Cow position:
               
chr4:285654-285387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
134, 76
               

               
Conread position:
               
346-644
               

               
Cow position:
               
chr4:19542805-19542514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
134, 89
               

               
Conread position:
               
347-508
               

               
Cow position:
               
chr4:5047331-5047491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
127, 51
               

               
Conread position:
               
347-598
               

               
Cow position:
               
chr4:53999501-53999743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
51, 21
               

               
Conread position:
               
347-630
               

               
Cow position:
               
chr4:23059987-23060272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
55, 148
               

               
Conread position:
               
347-630
               

               
Cow position:
               
chr4:48137921-48137646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
53, 151
               

               
Conread position:
               
347-630
               

               
Cow position:
               
chr4:56233691-56233423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 94
               

               
Conread position:
               
347-631
               

               
Cow position:
               
chr4:19561689-19561426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
129, 50
               

               
Conread position:
               
347-636
               

               
Cow position:
               
chr4:61214986-61215272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
52, 142
               

               
Conread position:
               
347-637
               

               
Cow position:
               
chr4:16637595-16637873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 47
               

               
Conread position:
               
347-638
               

               
Cow position:
               
chr4:43495906-43495626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 32
               

               
Conread position:
               
348-493
               

               
Cow position:
               
chr4:69386095-69385954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
128, 80
               

               
Conread position:
               
350-463
               

               
Cow position:
               
chr4:26683680-26683567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
350-568
               

               
Cow position:
               
chr4:36725047-36724836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
37, 150
               

               
Conread position:
               
350-626
               

               
Cow position:
               
chr4:5189006-5189261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
102, 29
               

               
Conread position:
               
350-630
               

               
Cow position:
               
chr4:24458097-24458365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
44, 99
               

               
Conread position:
               
350-644
               

               
Cow position:
               
chr4:45114599-45114888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
37, 27
               

               
Conread position:
               
353-567
               

               
Cow position:
               
chr4:10016601-10016807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
121, 5
               

               
Conread position:
               
354-535
               

               
Cow position:
               
chr4:38887126-38887313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 152
               

               
Conread position:
               
356-626
               

               
Cow position:
               
chr4:26175247-26175507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
49, 27
               

               
Conread position:
               
357-630
               

               
Cow position:
               
chr4:14513244-14513509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
123, 23
               

               
Conread position:
               
358-598
               

               
Cow position:
               
chr4:53833044-53832809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
32, 61
               

               
Conread position:
               
358-639
               

               
Cow position:
               
chr4:3475628-3475353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
30, 107
               

               
Conread position:
               
360-627
               

               
Cow position:
               
chr4:1237118-1237381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
36, 132
               

               
Conread position:
               
363-636
               

               
Cow position:
               
chr4:561394-561127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
32, 53
               

               
Conread position:
               
373-607
               

               
Cow position:
               
chr4:59565522-59565295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
82, 129
               

               
Conread position:
               
384-628
               

               
Cow position:
               
chr4:17660219-17660471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
11, 150
               

               
Conread position:
               
384-630
               

               
Cow position:
               
chr4:5850357-5850600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
61, 67
               

               
Conread position:
               
384-630
               

               
Cow position:
               
chr4:36841255-36841009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
46, 113
               

               
Conread position:
               
384-646
               

               
Cow position:
               
chr4:46082921-46083180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
158, 33
               

               
Conread position:
               
385-637
               

               
Cow position:
               
chr4:21058412-21058660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
25, 111
               

               
Conread position:
               
386-625
               

               
Cow position:
               
chr4:63365407-63365640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
86, 109
               

               
Conread position:
               
386-630
               

               
Cow position:
               
chr4:23568110-23567868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
85, 19
               

               
Conread position:
               
386-653
               

               
Cow position:
               
chr4:57931883-57931623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
9, 127
               

               
Conread position:
               
388-626
               

               
Cow position:
               
chr4:2141714-2141482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
10, 110
               

               
Conread position:
               
388-644
               

               
Cow position:
               
chr4:44072801-44073052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
89, 15
               

               
Conread position:
               
389-644
               

               
Cow position:
               
chr4:9714698-9714445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
131, 58
               

               
Conread position:
               
394-620
               

               
Cow position:
               
chr4:9482252-9482476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
64, 85
               

               
Conread position:
               
394-630
               

               
Cow position:
               
chr4:61391243-61391469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
13, 22
               

               
Conread position:
               
394-631
               

               
Cow position:
               
chr4:39009926-39009698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
82, 23
               

               
Conread position:
               
394-646
               

               
Cow position:
               
chr4:22259465-22259702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
21, 38
               

               
Conread position:
               
395-626
               

               
Cow position:
               
chr4:7530-7762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
111, 92
               

               
Conread position:
               
396-599
               

               
Cow position:
               
chr4:23911624-23911826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
76, 103
               

               
Conread position:
               
396-605
               

               
Cow position:
               
chr4:18576814-18577019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
14, 90
               

               
Conread position:
               
396-630
               

               
Cow position:
               
chr4:59833904-59833672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 111
               

               
Conread position:
               
396-636
               

               
Cow position:
               
chr4:68944212-68944450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
61, 100
               

               
Conread position:
               
396-640
               

               
Cow position:
               
chr4:27291997-27292237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
81, 100
               

               
Conread position:
               
397-607
               

               
Cow position:
               
chr4:46370773-46370565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
84, 100
               

               
Conread position:
               
398-607
               

               
Cow position:
               
chr4:43763010-43762796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 114
               

               
Conread position:
               
398-624
               

               
Cow position:
               
chr4:26307545-26307762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
141, 14
               

               
Conread position:
               
398-624
               

               
Cow position:
               
chr4:43542779-43542996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
96, 49
               

               
Conread position:
               
398-624
               

               
Cow position:
               
chr4:57555928-57555704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
79, 95
               

               
Conread position:
               
398-630
               

               
Cow position:
               
chr4:23570760-23570529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
73, 101
               

               
Conread position:
               
398-630
               

               
Cow position:
               
chr4:54501492-54501717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
78, 103
               

               
Conread position:
               
398-631
               

               
Cow position:
               
chr4:43369895-43370119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
83, 104
               

               
Conread position:
               
399-652
               

               
Cow position:
               
chr4:62570774-62570524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
60, 89
               

               
Conread position:
               
400-629
               

               
Cow position:
               
chr4:54667733-54667958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
80, 98
               

               
Conread position:
               
401-630
               

               
Cow position:
               
chr4:49212760-49212989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
76, 71
               

               
Conread position:
               
402-620
               

               
Cow position:
               
chr4:12259828-12260040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
79, 41
               

               
Conread position:
               
403-616
               

               
Cow position:
               
chr4:41292029-41292234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
9, 38
               

               
Conread position:
               
405-607
               

               
Cow position:
               
chr4:53447718-53447911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
86, 35
               

               
Conread position:
               
405-630
               

               
Cow position:
               
chr4:30574401-30574188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
76, 103
               

               
Conread position:
               
405-659
               

               
Cow position:
               
chr4:42232608-42232369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 92
               

               
Conread position:
               
409-626
               

               
Cow position:
               
chr4:46668513-46668306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
409-630
               

               
Cow position:
               
chr4:42266806-42267010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
67, 87
               

               
Conread position:
               
413-626
               

               
Cow position:
               
chr4:21064063-21064268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
414-637
               

               
Cow position:
               
chr4:56852844-56852622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
34, 86
               

               
Conread position:
               
418-630
               

               
Cow position:
               
chr4:22354875-22354671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
121, 40
               

               
Conread position:
               
418-630
               

               
Cow position:
               
chr4:22744261-22744056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
59, 11
               

               
Conread position:
               
418-630
               

               
Cow position:
               
chr4:46275129-46274925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
58, 80
               

               
Conread position:
               
421-630
               

               
Cow position:
               
chr4:7249635-7249837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
53, 77
               

               
Conread position:
               
422-625
               

               
Cow position:
               
chr4:10472153-10471960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
55, 9
               

               
Conread position:
               
422-636
               

               
Cow position:
               
chr4:23573483-23573267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
49, 77
               

               
Conread position:
               
425-630
               

               
Cow position:
               
chr4:56514007-56514207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
49, 6
               

               
Conread position:
               
429-620
               

               
Cow position:
               
chr4:620224-620411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
47, 66
               

               
Conread position:
               
429-621
               

               
Cow position:
               
chr4:2536757-2536574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 67
               

               
Conread position:
               
435-626
               

               
Cow position:
               
chr4:69406291-69406104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
102, 60
               

               
Conread position:
               
437-644
               

               
Cow position:
               
chr4:3251614-3251818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
468-644
               

               
Cow position:
               
chr4:58687546-58687719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
13, 32
               
Show alignments to all cow chromosomes.