Non-Coding RNA Search

Cow genome map


           Conread name:
           Ova1-OVRM10096F06
        

               Conread position:
               126-398
               

               Cow position:
               chr5:4267927-4267661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               35, 98
               

               Conread position:
               126-475
               

               Cow position:
               chr5:65140565-65140200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               105, 148
               

               Conread position:
               126-479
               

               Cow position:
               chr5:5856126-5855777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               39, 270
               

               Conread position:
               127-387
               

               Cow position:
               chr5:11562465-11562721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               161, 19
               

               Conread position:
               130-452
               

               Cow position:
               chr5:20843146-20843464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               222
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               94, 18
               

               Conread position:
               130-653
               

               Cow position:
               chr5:53842555-53842035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               544
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 107
               

               Conread position:
               132-441
               

               Cow position:
               chr5:57156038-57156367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               231
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               31, 159
               

               Conread position:
               133-636
               

               Cow position:
               chr5:74643428-74643902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               330
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               149, 26
               

               Conread position:
               146-626
               

               Cow position:
               chr5:65776131-65776617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 75
               

               Conread position:
               151-362
               

               Cow position:
               chr5:44734485-44734698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               154-446
               

               Cow position:
               chr5:66366744-66366449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               89, 19
               

               Conread position:
               158-492
               

               Cow position:
               chr5:33560507-33560839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               229
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               241, 11
               

               Conread position:
               158-626
               

               Cow position:
               chr5:56524393-56523943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               314
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               243, 11
               

               Conread position:
               159-384
               

               Cow position:
               chr5:47743855-47743635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               18, 74
               

               Conread position:
               159-417
               

               Cow position:
               chr5:52108029-52108296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               182
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               90, 10
               

               Conread position:
               159-452
               

               Cow position:
               chr5:41935424-41935721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               205
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               82, 17
               

               Conread position:
               159-489
               

               Cow position:
               chr5:18289349-18289027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               236
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               241, 17
               

               Conread position:
               159-490
               

               Cow position:
               chr5:73167782-73168105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               233
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               45, 50
               

               Conread position:
               159-567
               

               Cow position:
               chr5:41452459-41452839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               275
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               226, 72
               

               Conread position:
               159-601
               

               Cow position:
               chr5:24175583-24175164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 55
               

               Conread position:
               159-616
               

               Cow position:
               chr5:8023983-8024412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               309
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               239, 44
               

               Conread position:
               159-622
               

               Cow position:
               chr5:45845458-45845922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 284
               

               Conread position:
               159-625
               

               Cow position:
               chr5:22242542-22243015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 47
               

               Conread position:
               159-629
               

               Cow position:
               chr5:20779166-20779614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 194
               

               Conread position:
               159-630
               

               Cow position:
               chr5:14550351-14550821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 11
               

               Conread position:
               159-630
               

               Cow position:
               chr5:18701990-18702448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               292
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               90, 29
               

               Conread position:
               159-630
               

               Cow position:
               chr5:52164942-52165417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 11
               

               Conread position:
               159-630
               

               Cow position:
               chr5:58519183-58519634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               312
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               5, 32
               

               Conread position:
               159-630
               

               Cow position:
               chr5:60209915-60210374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               304
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               56, 11
               

               Conread position:
               159-630
               

               Cow position:
               chr5:62869832-62870270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               308
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               183, 11
               

               Conread position:
               159-636
               

               Cow position:
               chr5:18574413-18573929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 11
               

               Conread position:
               159-636
               

               Cow position:
               chr5:44796504-44796959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               239, 61
               

               Conread position:
               160-356
               

               Cow position:
               chr5:7675927-7676122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               160-390
               

               Cow position:
               chr5:56860674-56860446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               74, 104
               

               Conread position:
               160-581
               

               Cow position:
               chr5:44028081-44028486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               281
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               33, 10
               

               Conread position:
               160-613
               

               Cow position:
               chr5:11427005-11427461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               308
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               72, 33
               

               Conread position:
               160-630
               

               Cow position:
               chr5:13537365-13536922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 18
               

               Conread position:
               160-637
               

               Cow position:
               chr5:30487458-30487006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               329
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               234, 115
               

               Conread position:
               160-646
               

               Cow position:
               chr5:2309327-2309815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 264
               

               Conread position:
               160-653
               

               Cow position:
               chr5:62172629-62172162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 43
               

               Conread position:
               161-361
               

               Cow position:
               chr5:49821661-49821456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               161-377
               

               Cow position:
               chr5:3743562-3743334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               161-389
               

               Cow position:
               chr5:6520236-6520011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               161, 70
               

               Conread position:
               161-389
               

               Cow position:
               chr5:39036012-39035780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               70, 115
               

               Conread position:
               161-389
               

               Cow position:
               chr5:69383481-69383255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               161-428
               

               Cow position:
               chr5:48178171-48178427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               122, 73
               

               Conread position:
               161-433
               

               Cow position:
               chr5:56153829-56153569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               156, 70
               

               Conread position:
               161-446
               

               Cow position:
               chr5:61456077-61455787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               33, 173
               

               Conread position:
               161-452
               

               Cow position:
               chr5:59626742-59627038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               71, 115
               

               Conread position:
               161-463
               

               Cow position:
               chr5:57755804-57756106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               71, 66
               

               Conread position:
               161-467
               

               Cow position:
               chr5:19752531-19752226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 164
               

               Conread position:
               161-476
               

               Cow position:
               chr5:41885144-41884848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               222
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               268, 116
               

               Conread position:
               161-478
               

               Cow position:
               chr5:46022828-46023147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               71, 45
               

               Conread position:
               161-479
               

               Cow position:
               chr5:46129437-46129752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               220
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               128, 45
               

               Conread position:
               161-481
               

               Cow position:
               chr5:30805380-30805074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               232
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               8, 33
               

               Conread position:
               161-490
               

               Cow position:
               chr5:12557057-12557395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 154
               

               Conread position:
               161-490
               

               Cow position:
               chr5:16179293-16179628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               249
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               193, 69
               

               Conread position:
               161-508
               

               Cow position:
               chr5:7057167-7057528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               70, 153
               

               Conread position:
               161-550
               

               Cow position:
               chr5:42050774-42050392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               258
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               240, 49
               

               Conread position:
               161-558
               

               Cow position:
               chr5:46512538-46512930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               270
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               71, 38
               

               Conread position:
               161-567
               

               Cow position:
               chr5:29060707-29061097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               271
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               9, 98
               

               Conread position:
               161-567
               

               Cow position:
               chr5:59115623-59115208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               289
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               54, 43
               

               Conread position:
               161-568
               

               Cow position:
               chr5:34562239-34561835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               281
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               185, 54
               

               Conread position:
               161-605
               

               Cow position:
               chr5:26262455-26262884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 71
               

               Conread position:
               161-620
               

               Cow position:
               chr5:5257057-5257522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 346
               

               Conread position:
               161-621
               

               Cow position:
               chr5:27102583-27103014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               236, 56
               

               Conread position:
               161-622
               

               Cow position:
               chr5:72895916-72895465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               282
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               90, 274
               

               Conread position:
               161-624
               

               Cow position:
               chr5:47757002-47756539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               310
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               88, 179
               

               Conread position:
               161-624
               

               Cow position:
               chr5:56071090-56070624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 342
               

               Conread position:
               161-626
               

               Cow position:
               chr5:20128284-20127823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 120
               

               Conread position:
               161-626
               

               Cow position:
               chr5:26377444-26377898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 104
               

               Conread position:
               161-626
               

               Cow position:
               chr5:28224672-28224224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               313, 70
               

               Conread position:
               161-627
               

               Cow position:
               chr5:16025253-16025692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 84
               

               Conread position:
               161-629
               

               Cow position:
               chr5:72006652-72007087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               316, 27
               

               Conread position:
               161-630
               

               Cow position:
               chr5:29828278-29827818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 123
               

               Conread position:
               161-630
               

               Cow position:
               chr5:43858188-43858663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 163
               

               Conread position:
               161-630
               

               Cow position:
               chr5:43922941-43923384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               317
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               229, 62
               

               Conread position:
               161-630
               

               Cow position:
               chr5:65941020-65941488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 110
               

               Conread position:
               161-631
               

               Cow position:
               chr5:21617685-21617219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 94
               

               Conread position:
               161-634
               

               Cow position:
               chr5:55177110-55176649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               218, 47
               

               Conread position:
               161-636
               

               Cow position:
               chr5:9893895-9894368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 47
               

               Conread position:
               161-636
               

               Cow position:
               chr5:57934890-57935355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 87
               

               Conread position:
               161-643
               

               Cow position:
               chr5:35685163-35684686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               315
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               70, 37
               

               Conread position:
               161-644
               

               Cow position:
               chr5:55089352-55088896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               324
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               227, 70
               

               Conread position:
               161-646
               

               Cow position:
               chr5:44993809-44994288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 180
               

               Conread position:
               161-650
               

               Cow position:
               chr5:26562387-26561897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               324
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               75, 104
               

               Conread position:
               162-391
               

               Cow position:
               chr5:44163144-44163371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               69, 53
               

               Conread position:
               162-421
               

               Cow position:
               chr5:33273926-33273657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               69, 173
               

               Conread position:
               162-470
               

               Cow position:
               chr5:50713521-50713853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               222
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               162-493
               

               Cow position:
               chr5:991703-991360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               226
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               87, 222
               

               Conread position:
               162-504
               

               Cow position:
               chr5:19335549-19335905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               230
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               89, 14
               

               Conread position:
               162-542
               

               Cow position:
               chr5:66972659-66972276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 51
               

               Conread position:
               162-565
               

               Cow position:
               chr5:55956139-55955735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 102
               

               Conread position:
               162-624
               

               Cow position:
               chr5:64321990-64321519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 67
               

               Conread position:
               162-624
               

               Cow position:
               chr5:72045447-72045870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               312
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               9, 27
               

               Conread position:
               162-626
               

               Cow position:
               chr5:58701-59159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               309
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               69, 146
               

               Conread position:
               162-629
               

               Cow position:
               chr5:14903837-14904301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               321
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               66, 48
               

               Conread position:
               162-630
               

               Cow position:
               chr5:26467856-26467385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               311
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               85, 32
               

               Conread position:
               162-630
               

               Cow position:
               chr5:35208491-35208026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               477
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 14
               

               Conread position:
               162-636
               

               Cow position:
               chr5:47602037-47601576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               315, 58
               

               Conread position:
               162-658
               

               Cow position:
               chr5:40927785-40928234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               341
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               228, 62
               

               Conread position:
               163-370
               

               Cow position:
               chr5:7177380-7177170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               163-433
               

               Cow position:
               chr5:52001396-52001666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               69, 33
               

               Conread position:
               163-445
               

               Cow position:
               chr5:63832144-63831870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               187
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               224, 68
               

               Conread position:
               163-479
               

               Cow position:
               chr5:29097590-29097276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               214
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               234, 82
               

               Conread position:
               163-484
               

               Cow position:
               chr5:46681495-46681812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               221
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               69, 25
               

               Conread position:
               163-484
               

               Cow position:
               chr5:57526699-57527014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               227
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               68, 134
               

               Conread position:
               163-524
               

               Cow position:
               chr5:43370965-43371335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               237
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               91, 200
               

               Conread position:
               163-532
               

               Cow position:
               chr5:35246879-35247250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               261
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               21, 262
               

               Conread position:
               163-544
               

               Cow position:
               chr5:35459068-35459444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               262
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               149, 92
               

               Conread position:
               163-603
               

               Cow position:
               chr5:4280673-4280255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 69
               

               Conread position:
               163-606
               

               Cow position:
               chr5:6572959-6572540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               295
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               281, 67
               

               Conread position:
               163-607
               

               Cow position:
               chr5:35969768-35969330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 197
               

               Conread position:
               163-626
               

               Cow position:
               chr5:17999268-17999727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 174
               

               Conread position:
               163-630
               

               Cow position:
               chr5:41165310-41164853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 68
               

               Conread position:
               163-630
               

               Cow position:
               chr5:58144376-58144841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               319
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               98, 31
               

               Conread position:
               163-631
               

               Cow position:
               chr5:66257862-66257406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               308
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               79, 63
               

               Conread position:
               163-634
               

               Cow position:
               chr5:53055331-53055794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               301
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               69, 288
               

               Conread position:
               164-630
               

               Cow position:
               chr5:30845334-30844877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 99
               

               Conread position:
               166-408
               

               Cow position:
               chr5:25598055-25597816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               167
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               17, 90
               

               Conread position:
               166-493
               

               Cow position:
               chr5:11539827-11540154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               212
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               123, 65
               

               Conread position:
               166-558
               

               Cow position:
               chr5:16214906-16214524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 65
               

               Conread position:
               166-631
               

               Cow position:
               chr5:17062855-17063330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 10
               

               Conread position:
               166-636
               

               Cow position:
               chr5:4552360-4551891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               303
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               92, 27
               

               Conread position:
               166-650
               

               Cow position:
               chr5:37646300-37645820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 65
               

               Conread position:
               167-459
               

               Cow position:
               chr5:63234598-63234897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               216
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               11, 186
               

               Conread position:
               167-633
               

               Cow position:
               chr5:67932242-67932699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 196
               

               Conread position:
               168-393
               

               Cow position:
               chr5:60948355-60948129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               151
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               63, 159
               

               Conread position:
               168-397
               

               Cow position:
               chr5:56613340-56613572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               168-493
               

               Cow position:
               chr5:71768285-71768583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               216
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               168-497
               

               Cow position:
               chr5:49474331-49474655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               232
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               213, 63
               

               Conread position:
               168-629
               

               Cow position:
               chr5:28324583-28324111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 96
               

               Conread position:
               168-630
               

               Cow position:
               chr5:36855428-36854977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 43
               

               Conread position:
               168-636
               

               Cow position:
               chr5:55756190-55756683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               496
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 348
               

               Conread position:
               169-358
               

               Cow position:
               chr5:56434105-56433911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               169-388
               

               Cow position:
               chr5:57062306-57062528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               169-389
               

               Cow position:
               chr5:67634286-67634517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               169-421
               

               Cow position:
               chr5:26548921-26549175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               203, 61
               

               Conread position:
               169-430
               

               Cow position:
               chr5:50101156-50101420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               150, 62
               

               Conread position:
               169-438
               

               Cow position:
               chr5:15471140-15470882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               218, 20
               

               Conread position:
               169-451
               

               Cow position:
               chr5:7012627-7012911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               62, 91
               

               Conread position:
               169-451
               

               Cow position:
               chr5:30247303-30247587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               74, 113
               

               Conread position:
               169-472
               

               Cow position:
               chr5:43403131-43402816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               215
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               169-477
               

               Cow position:
               chr5:61914793-61914481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               211
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               70, 235
               

               Conread position:
               169-479
               

               Cow position:
               chr5:50575990-50575694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               169-484
               

               Cow position:
               chr5:33834262-33833948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               205
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               63, 129
               

               Conread position:
               169-490
               

               Cow position:
               chr5:35228922-35229232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               63, 24
               

               Conread position:
               169-491
               

               Cow position:
               chr5:36038783-36039108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               229
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               140, 44
               

               Conread position:
               169-493
               

               Cow position:
               chr5:12902141-12901809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               63, 207
               

               Conread position:
               169-493
               

               Cow position:
               chr5:56014944-56014628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               218, 88
               

               Conread position:
               169-505
               

               Cow position:
               chr5:44446653-44446987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               205, 62
               

               Conread position:
               169-544
               

               Cow position:
               chr5:3582777-3582423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               240
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               308, 62
               

               Conread position:
               169-564
               

               Cow position:
               chr5:41009788-41010166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               258
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               233, 61
               

               Conread position:
               169-568
               

               Cow position:
               chr5:7044484-7044884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               266
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               76, 335
               

               Conread position:
               169-568
               

               Cow position:
               chr5:34625170-34624795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               276
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               161, 62
               

               Conread position:
               169-568
               

               Cow position:
               chr5:52668261-52667854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               262
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               80, 127
               

               Conread position:
               169-584
               

               Cow position:
               chr5:57591906-57591501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               255
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               249, 51
               

               Conread position:
               169-601
               

               Cow position:
               chr5:1687894-1688319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               290
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               65, 163
               

               Conread position:
               169-604
               

               Cow position:
               chr5:56028323-56028740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               292
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               308, 62
               

               Conread position:
               169-610
               

               Cow position:
               chr5:18899178-18898768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               217, 15
               

               Conread position:
               169-616
               

               Cow position:
               chr5:32394824-32394379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               285
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               70, 243
               

               Conread position:
               169-620
               

               Cow position:
               chr5:64175908-64176346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               308, 62
               

               Conread position:
               169-623
               

               Cow position:
               chr5:19278481-19278920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               309
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               63, 106
               

               Conread position:
               169-624
               

               Cow position:
               chr5:27155224-27154793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 63
               

               Conread position:
               169-625
               

               Cow position:
               chr5:3772064-3771616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               228, 62
               

               Conread position:
               169-625
               

               Cow position:
               chr5:11667962-11668408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 222
               

               Conread position:
               169-625
               

               Cow position:
               chr5:36868959-36868515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               303
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               63, 127
               

               Conread position:
               169-626
               

               Cow position:
               chr5:16937812-16938239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               307, 63
               

               Conread position:
               169-626
               

               Cow position:
               chr5:30303103-30302667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               309
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               225, 63
               

               Conread position:
               169-626
               

               Cow position:
               chr5:35763466-35763059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               305
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               308, 41
               

               Conread position:
               169-626
               

               Cow position:
               chr5:39447303-39447763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 261
               

               Conread position:
               169-626
               

               Cow position:
               chr5:47316753-47317199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               305
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               63, 24
               

               Conread position:
               169-626
               

               Cow position:
               chr5:47870832-47871282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               227, 41
               

               Conread position:
               169-629
               

               Cow position:
               chr5:11229449-11229908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 41
               

               Conread position:
               169-629
               

               Cow position:
               chr5:21829086-21828630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 24
               

               Conread position:
               169-630
               

               Cow position:
               chr5:14314738-14314287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               209, 61
               

               Conread position:
               169-630
               

               Cow position:
               chr5:30276909-30276460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 64
               

               Conread position:
               169-630
               

               Cow position:
               chr5:50723270-50722815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 232
               

               Conread position:
               169-631
               

               Cow position:
               chr5:30253962-30253509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 321
               

               Conread position:
               169-631
               

               Cow position:
               chr5:39937338-39936867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               323
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               62, 14
               

               Conread position:
               169-632
               

               Cow position:
               chr5:44847805-44848254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 62
               

               Conread position:
               169-634
               

               Cow position:
               chr5:55068922-55068478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 35
               

               Conread position:
               169-641
               

               Cow position:
               chr5:69338036-69337586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               313
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               113, 48
               

               Conread position:
               169-643
               

               Cow position:
               chr5:40109706-40109253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               313
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               226, 62
               

               Conread position:
               169-644
               

               Cow position:
               chr5:32338739-32339224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               328
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               63, 12
               

               Conread position:
               169-644
               

               Cow position:
               chr5:50901121-50900659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               316
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               120, 60
               

               Conread position:
               169-646
               

               Cow position:
               chr5:53835943-53835462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 146
               

               Conread position:
               169-653
               

               Cow position:
               chr5:48143568-48144052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 58
               

               Conread position:
               169-659
               

               Cow position:
               chr5:27615715-27615253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               336
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               210, 62
               

               Conread position:
               170-423
               

               Cow position:
               chr5:57101305-57101561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               214, 98
               

               Conread position:
               170-429
               

               Cow position:
               chr5:20288037-20288305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               170-538
               

               Cow position:
               chr5:66582191-66581817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               62, 112
               

               Conread position:
               170-552
               

               Cow position:
               chr5:37069083-37068734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               269
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               206, 39
               

               Conread position:
               170-561
               

               Cow position:
               chr5:30628932-30629324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               264
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               93, 266
               

               Conread position:
               170-602
               

               Cow position:
               chr5:51053427-51053855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 97
               

               Conread position:
               170-607
               

               Cow position:
               chr5:12322590-12323013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               278
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               202, 61
               

               Conread position:
               170-622
               

               Cow position:
               chr5:16893557-16894003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               217, 105
               

               Conread position:
               170-626
               

               Cow position:
               chr5:24996000-24996455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               311
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               73, 45
               

               Conread position:
               170-630
               

               Cow position:
               chr5:25035033-25035462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               318
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               73, 166
               

               Conread position:
               170-637
               

               Cow position:
               chr5:12873973-12873502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               481
               

               Alignm identity:
               299
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               41, 312
               

               Conread position:
               170-644
               

               Cow position:
               chr5:68605084-68604610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               313
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               47, 52
               

               Conread position:
               170-653
               

               Cow position:
               chr5:25495130-25495593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               320
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               62, 24
               

               Conread position:
               171-493
               

               Cow position:
               chr5:12434755-12434429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               221
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               200, 88
               

               Conread position:
               171-493
               

               Cow position:
               chr5:64140758-64140424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               80, 264
               

               Conread position:
               171-626
               

               Cow position:
               chr5:26990607-26990162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 68
               

               Conread position:
               171-629
               

               Cow position:
               chr5:42064427-42063969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 89
               

               Conread position:
               171-630
               

               Cow position:
               chr5:32975338-32975786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 143
               

               Conread position:
               172-571
               

               Cow position:
               chr5:50600265-50599877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               258
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               141, 209
               

               Conread position:
               173-551
               

               Cow position:
               chr5:47696242-47696599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 58
               

               Conread position:
               174-431
               

               Cow position:
               chr5:38717512-38717275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               190
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               174-591
               

               Cow position:
               chr5:22643030-22643414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               235, 22
               

               Conread position:
               175-459
               

               Cow position:
               chr5:48867254-48867535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               189
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               244, 56
               

               Conread position:
               176-361
               

               Cow position:
               chr5:16668908-16668725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               176-626
               

               Cow position:
               chr5:35145550-35145121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 92
               

               Conread position:
               176-626
               

               Cow position:
               chr5:64523649-64524111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               299
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               52, 246
               

               Conread position:
               177-488
               

               Cow position:
               chr5:53947113-53946794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               55, 83
               

               Conread position:
               177-535
               

               Cow position:
               chr5:45397779-45397435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               230
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               218, 22
               

               Conread position:
               177-630
               

               Cow position:
               chr5:57328011-57327553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               310
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               174, 78
               

               Conread position:
               177-636
               

               Cow position:
               chr5:42845383-42845841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 25
               

               Conread position:
               178-626
               

               Cow position:
               chr5:50482645-50483093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               296
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               64, 227
               

               Conread position:
               179-368
               

               Cow position:
               chr5:38040356-38040543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               179-632
               

               Cow position:
               chr5:29352920-29353366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 52
               

               Conread position:
               180-488
               

               Cow position:
               chr5:60016375-60016066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               71, 151
               

               Conread position:
               181-478
               

               Cow position:
               chr5:46079929-46080225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               116, 25
               

               Conread position:
               181-493
               

               Cow position:
               chr5:60184008-60183695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               155, 12
               

               Conread position:
               183-618
               

               Cow position:
               chr5:65753068-65752633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               287
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               39, 88
               

               Conread position:
               184-508
               

               Cow position:
               chr5:41713495-41713180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               243
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               120, 44
               

               Conread position:
               184-626
               

               Cow position:
               chr5:45225613-45226055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 73
               

               Conread position:
               185-490
               

               Cow position:
               chr5:4927373-4927670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               216
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               206, 25
               

               Conread position:
               185-498
               

               Cow position:
               chr5:57419590-57419902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               208
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               47, 72
               

               Conread position:
               188-622
               

               Cow position:
               chr5:48829358-48828920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               281
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               69, 210
               

               Conread position:
               194-431
               

               Cow position:
               chr5:55795773-55796008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               175
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               133, 37
               

               Conread position:
               194-652
               

               Cow position:
               chr5:54350174-54350615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 36
               

               Conread position:
               204-389
               

               Cow position:
               chr5:65197495-65197681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               206-626
               

               Cow position:
               chr5:12710064-12709655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               287
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               119, 8
               

               Conread position:
               207-624
               

               Cow position:
               chr5:34463399-34463814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               277
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               10, 49
               

               Conread position:
               207-626
               

               Cow position:
               chr5:6683193-6683579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               290
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               249, 21
               

               Conread position:
               218-658
               

               Cow position:
               chr5:37646375-37646817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 13
               

               Conread position:
               225-360
               

               Cow position:
               chr5:15386703-15386836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               103
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               230-605
               

               Cow position:
               chr5:34184385-34184009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               263
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               21, 72
               

               Conread position:
               231-627
               

               Cow position:
               chr5:64758609-64758999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 278
               

               Conread position:
               231-633
               

               Cow position:
               chr5:59325684-59326066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               269
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               110, 119
               

               Conread position:
               231-646
               

               Cow position:
               chr5:49685119-49685532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               266, 33
               

               Conread position:
               232-439
               

               Cow position:
               chr5:22446067-22445863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               71, 36
               

               Conread position:
               233-600
               

               Cow position:
               chr5:6895971-6896332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               257
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               160, 98
               

               Conread position:
               234-479
               

               Cow position:
               chr5:3639342-3639577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               136, 62
               

               Conread position:
               235-626
               

               Cow position:
               chr5:29771682-29771287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               273
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               137, 222
               

               Conread position:
               238-490
               

               Cow position:
               chr5:54375351-54375610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               134, 0
               

               Conread position:
               238-629
               

               Cow position:
               chr5:5110930-5111311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               270
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               152, 20
               

               Conread position:
               239-445
               

               Cow position:
               chr5:29515355-29515553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               170, 88
               

               Conread position:
               239-630
               

               Cow position:
               chr5:26094016-26094404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               261
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               157, 187
               

               Conread position:
               240-487
               

               Cow position:
               chr5:7698148-7697905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               237, 15
               

               Conread position:
               241-623
               

               Cow position:
               chr5:71454465-71454824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               235, 15
               

               Conread position:
               243-477
               

               Cow position:
               chr5:76366149-76366384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               191, 0
               

               Conread position:
               244-483
               

               Cow position:
               chr5:28035887-28035644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               184
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               144, 29
               

               Conread position:
               244-564
               

               Cow position:
               chr5:56317434-56317125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               233, 85
               

               Conread position:
               245-486
               

               Cow position:
               chr5:55019436-55019194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 179
               

               Conread position:
               245-630
               

               Cow position:
               chr5:359795-360177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               260
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               128, 155
               

               Conread position:
               245-644
               

               Cow position:
               chr5:28230308-28229908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 260
               

               Conread position:
               246-479
               

               Cow position:
               chr5:14473260-14473504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               246-489
               

               Cow position:
               chr5:45574763-45574513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               36, 28
               

               Conread position:
               246-490
               

               Cow position:
               chr5:39258648-39258418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               235, 85
               

               Conread position:
               246-490
               

               Cow position:
               chr5:60747138-60747381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               186
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               152, 43
               

               Conread position:
               246-493
               

               Cow position:
               chr5:58446950-58446697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               188
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               144, 0
               

               Conread position:
               246-626
               

               Cow position:
               chr5:56467832-56467473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               252
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               311, 22
               

               Conread position:
               246-633
               

               Cow position:
               chr5:44053912-44054276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               262
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               230, 64
               

               Conread position:
               247-389
               

               Cow position:
               chr5:55129485-55129343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               104
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               247-458
               

               Cow position:
               chr5:67212502-67212286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               162
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               131, 20
               

               Conread position:
               247-484
               

               Cow position:
               chr5:59872938-59873187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               42, 30
               

               Conread position:
               247-485
               

               Cow position:
               chr5:62378922-62378693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               35, 27
               

               Conread position:
               247-487
               

               Cow position:
               chr5:35126197-35125953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               150, 0
               

               Conread position:
               247-493
               

               Cow position:
               chr5:1396741-1396510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               247-493
               

               Cow position:
               chr5:49440734-49440978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               148, 28
               

               Conread position:
               247-493
               

               Cow position:
               chr5:54767767-54768016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               183
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               149, 119
               

               Conread position:
               247-508
               

               Cow position:
               chr5:37808521-37808798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               201
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               136, 183
               

               Conread position:
               247-543
               

               Cow position:
               chr5:16206013-16206308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               207
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               65, 106
               

               Conread position:
               247-558
               

               Cow position:
               chr5:54060418-54060110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 102
               

               Conread position:
               247-565
               

               Cow position:
               chr5:47323604-47323280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               246, 109
               

               Conread position:
               247-568
               

               Cow position:
               chr5:69731642-69731344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               143, 84
               

               Conread position:
               247-598
               

               Cow position:
               chr5:23168684-23169022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               246
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               125, 214
               

               Conread position:
               247-605
               

               Cow position:
               chr5:71494963-71494606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               250
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               141, 189
               

               Conread position:
               247-609
               

               Cow position:
               chr5:57737241-57736899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               252
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               225, 144
               

               Conread position:
               247-619
               

               Cow position:
               chr5:72564906-72564538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 254
               

               Conread position:
               247-620
               

               Cow position:
               chr5:6503739-6504105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               245
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               149, 203
               

               Conread position:
               247-624
               

               Cow position:
               chr5:54086680-54086311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               260
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               256, 79
               

               Conread position:
               247-626
               

               Cow position:
               chr5:64139702-64139332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               258
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               230, 143
               

               Conread position:
               247-630
               

               Cow position:
               chr5:15479267-15478878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 35
               

               Conread position:
               247-630
               

               Cow position:
               chr5:43929594-43929969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               264
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               148, 102
               

               Conread position:
               247-630
               

               Cow position:
               chr5:53855848-53855469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               258
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               82, 189
               

               Conread position:
               247-630
               

               Cow position:
               chr5:55966741-55967118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 30
               

               Conread position:
               247-644
               

               Cow position:
               chr5:458630-458223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 64
               

               Conread position:
               247-644
               

               Cow position:
               chr5:37814768-37814374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               237
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               172, 227
               

               Conread position:
               247-659
               

               Cow position:
               chr5:4031844-4032256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 258
               

               Conread position:
               247-659
               

               Cow position:
               chr5:54311478-54311074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 254
               

               Conread position:
               248-564
               

               Cow position:
               chr5:7723806-7723501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               132, 153
               

               Conread position:
               248-626
               

               Cow position:
               chr5:21039842-21040205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               268
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               233, 60
               

               Conread position:
               249-432
               

               Cow position:
               chr5:34914412-34914598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               136, 182
               

               Conread position:
               249-435
               

               Cow position:
               chr5:57364961-57365146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               148, 31
               

               Conread position:
               249-470
               

               Cow position:
               chr5:37757699-37757908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               249-473
               

               Cow position:
               chr5:42782584-42782802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               139, 0
               

               Conread position:
               249-488
               

               Cow position:
               chr5:18554032-18553798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               124, 41
               

               Conread position:
               249-490
               

               Cow position:
               chr5:6890883-6891121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               182
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               148, 40
               

               Conread position:
               249-490
               

               Cow position:
               chr5:47680878-47681105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               249-493
               

               Cow position:
               chr5:44726194-44726432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               40, 25
               

               Conread position:
               249-505
               

               Cow position:
               chr5:29844420-29844160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               184
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               35, 47
               

               Conread position:
               249-544
               

               Cow position:
               chr5:39875264-39874973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 166
               

               Conread position:
               249-560
               

               Cow position:
               chr5:23529143-23529442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 24
               

               Conread position:
               249-565
               

               Cow position:
               chr5:7552273-7552589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               15, 156
               

               Conread position:
               249-568
               

               Cow position:
               chr5:31923513-31923208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               228
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               84, 114
               

               Conread position:
               249-574
               

               Cow position:
               chr5:68329848-68330162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               236
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               64, 12
               

               Conread position:
               249-575
               

               Cow position:
               chr5:62639044-62638725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               235
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               121, 134
               

               Conread position:
               249-594
               

               Cow position:
               chr5:32282473-32282131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               150, 50
               

               Conread position:
               249-607
               

               Cow position:
               chr5:3649322-3649676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               249
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               24, 38
               

               Conread position:
               249-616
               

               Cow position:
               chr5:58320331-58320683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 34
               

               Conread position:
               249-618
               

               Cow position:
               chr5:48758080-48757721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 81
               

               Conread position:
               249-619
               

               Cow position:
               chr5:27411261-27411614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 129
               

               Conread position:
               249-626
               

               Cow position:
               chr5:46322663-46323043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               274
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               152, 95
               

               Conread position:
               249-629
               

               Cow position:
               chr5:26594959-26595337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               264
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               54, 214
               

               Conread position:
               249-630
               

               Cow position:
               chr5:4710012-4710377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               249-630
               

               Cow position:
               chr5:28945920-28946294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 99
               

               Conread position:
               249-630
               

               Cow position:
               chr5:46610958-46611325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               264
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               94, 169
               

               Conread position:
               249-630
               

               Cow position:
               chr5:46798382-46798017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 37
               

               Conread position:
               249-631
               

               Cow position:
               chr5:17028235-17027862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 210
               

               Conread position:
               249-631
               

               Cow position:
               chr5:27419589-27419957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 168
               

               Conread position:
               249-631
               

               Cow position:
               chr5:41604763-41604373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               279
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               121, 55
               

               Conread position:
               249-631
               

               Cow position:
               chr5:61487972-61488347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               255
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               206, 54
               

               Conread position:
               249-644
               

               Cow position:
               chr5:31660517-31660887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               279
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               155, 129
               

               Conread position:
               249-650
               

               Cow position:
               chr5:25899734-25900116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               280
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               129, 50
               

               Conread position:
               249-652
               

               Cow position:
               chr5:41598572-41598953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               277
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               136, 50
               

               Conread position:
               250-367
               

               Cow position:
               chr5:53145613-53145730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               92
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               250-429
               

               Cow position:
               chr5:58555276-58555093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               128
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               134, 0
               

               Conread position:
               250-433
               

               Cow position:
               chr5:49501685-49501870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               150, 0
               

               Conread position:
               250-449
               

               Cow position:
               chr5:45419998-45420195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               148
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               138, 0
               

               Conread position:
               250-468
               

               Cow position:
               chr5:11769408-11769187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               135, 87
               

               Conread position:
               250-490
               

               Cow position:
               chr5:53710550-53710797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               143, 0
               

               Conread position:
               250-490
               

               Cow position:
               chr5:57767848-57768086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               178
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               155, 14
               

               Conread position:
               250-490
               

               Cow position:
               chr5:63426866-63427111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               148, 0
               

               Conread position:
               250-493
               

               Cow position:
               chr5:56680395-56680141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               250-498
               

               Cow position:
               chr5:23678564-23678815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               188
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               149, 36
               

               Conread position:
               250-507
               

               Cow position:
               chr5:35784850-35785096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               180
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               35, 81
               

               Conread position:
               250-534
               

               Cow position:
               chr5:73556057-73556328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               191
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               136, 53
               

               Conread position:
               250-559
               

               Cow position:
               chr5:14629666-14629980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               215
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               49, 255
               

               Conread position:
               250-606
               

               Cow position:
               chr5:50215425-50215769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               240
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               219, 24
               

               Conread position:
               250-626
               

               Cow position:
               chr5:9089889-9090254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 40
               

               Conread position:
               250-629
               

               Cow position:
               chr5:50533249-50533618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               256
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               143, 70
               

               Conread position:
               250-630
               

               Cow position:
               chr5:37189958-37190331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               255
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               39, 27
               

               Conread position:
               250-630
               

               Cow position:
               chr5:63987307-63987682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               273
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               137, 73
               

               Conread position:
               250-631
               

               Cow position:
               chr5:1949919-1950297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               274
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               110, 23
               

               Conread position:
               250-644
               

               Cow position:
               chr5:43992463-43992076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 242
               

               Conread position:
               251-415
               

               Cow position:
               chr5:57230200-57230367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               122
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               141, 0
               

               Conread position:
               251-450
               

               Cow position:
               chr5:41945987-41945786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               146, 52
               

               Conread position:
               251-481
               

               Cow position:
               chr5:17267754-17267988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               134, 48
               

               Conread position:
               251-490
               

               Cow position:
               chr5:26476880-26477115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               229, 109
               

               Conread position:
               251-562
               

               Cow position:
               chr5:30949777-30950087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 179
               

               Conread position:
               251-568
               

               Cow position:
               chr5:57575917-57575592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               23, 252
               

               Conread position:
               251-585
               

               Cow position:
               chr5:4221116-4220790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               235
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               119, 105
               

               Conread position:
               251-630
               

               Cow position:
               chr5:34441642-34442027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 170
               

               Conread position:
               251-630
               

               Cow position:
               chr5:34887057-34887433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               252
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               40, 34
               

               Conread position:
               251-630
               

               Cow position:
               chr5:64399146-64398767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               267
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               22, 30
               

               Conread position:
               252-493
               

               Cow position:
               chr5:13717434-13717677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               219, 12
               

               Conread position:
               252-549
               

               Cow position:
               chr5:45273365-45273657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               203
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               220, 22
               

               Conread position:
               252-560
               

               Cow position:
               chr5:65967594-65967897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               126, 175
               

               Conread position:
               252-624
               

               Cow position:
               chr5:20783759-20783399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               248
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               64, 90
               

               Conread position:
               255-493
               

               Cow position:
               chr5:41294215-41293974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               184
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               12, 96
               

               Conread position:
               255-605
               

               Cow position:
               chr5:62142810-62142460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 201
               

               Conread position:
               255-620
               

               Cow position:
               chr5:27306438-27306093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               262
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               141, 106
               

               Conread position:
               255-629
               

               Cow position:
               chr5:4218991-4218643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               264
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               222, 41
               

               Conread position:
               255-629
               

               Cow position:
               chr5:65932809-65933162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               263
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               216, 117
               

               Conread position:
               255-630
               

               Cow position:
               chr5:44752173-44752545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 189
               

               Conread position:
               255-630
               

               Cow position:
               chr5:52000352-51999984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 47
               

               Conread position:
               255-630
               

               Cow position:
               chr5:60715234-60715590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               261
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               148, 77
               

               Conread position:
               256-630
               

               Cow position:
               chr5:58856235-58855869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               209, 67
               

               Conread position:
               256-644
               

               Cow position:
               chr5:68481355-68480975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               260
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               198, 41
               

               Conread position:
               256-646
               

               Cow position:
               chr5:26046455-26046083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               258
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               199, 43
               

               Conread position:
               257-389
               

               Cow position:
               chr5:23527498-23527631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               102
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               258-528
               

               Cow position:
               chr5:72951975-72951703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               24, 16
               

               Conread position:
               258-629
               

               Cow position:
               chr5:50821914-50821554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               257
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               120, 134
               

               Conread position:
               259-419
               

               Cow position:
               chr5:45574235-45574399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               140, 0
               

               Conread position:
               259-482
               

               Cow position:
               chr5:1087069-1087290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               150
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               139, 0
               

               Conread position:
               259-630
               

               Cow position:
               chr5:15598108-15598469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               261
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               116, 40
               

               Conread position:
               260-628
               

               Cow position:
               chr5:43737834-43738181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 6
               

               Conread position:
               260-636
               

               Cow position:
               chr5:46509736-46510109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               259
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               130, 208
               

               Conread position:
               261-487
               

               Cow position:
               chr5:21534983-21535215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               121, 111
               

               Conread position:
               261-659
               

               Cow position:
               chr5:48573648-48574026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               387, 49
               

               Conread position:
               264-568
               

               Cow position:
               chr5:51935315-51935009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               24, 49
               

               Conread position:
               264-630
               

               Cow position:
               chr5:31640550-31640192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               251
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               118, 209
               

               Conread position:
               264-630
               

               Cow position:
               chr5:35826727-35826355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               213, 0
               

               Conread position:
               265-646
               

               Cow position:
               chr5:42744904-42744546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               264
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               134, 28
               

               Conread position:
               268-528
               

               Cow position:
               chr5:67540080-67540339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               142, 122
               

               Conread position:
               269-493
               

               Cow position:
               chr5:56636015-56635794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               212, 104
               

               Conread position:
               271-650
               

               Cow position:
               chr5:63964047-63964428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               252
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               45, 157
               

               Conread position:
               272-493
               

               Cow position:
               chr5:23357446-23357228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               167, 57
               

               Conread position:
               272-630
               

               Cow position:
               chr5:65601573-65601225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               251
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               21, 16
               

               Conread position:
               273-568
               

               Cow position:
               chr5:57265788-57266071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               196
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               116, 176
               

               Conread position:
               273-574
               

               Cow position:
               chr5:55929060-55928763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 202
               

               Conread position:
               273-602
               

               Cow position:
               chr5:44049814-44049495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               220
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               117, 74
               

               Conread position:
               273-626
               

               Cow position:
               chr5:61600521-61600181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               241
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               196, 22
               

               Conread position:
               273-626
               

               Cow position:
               chr5:64137372-64137020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               243
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               123, 229
               

               Conread position:
               273-630
               

               Cow position:
               chr5:33661962-33661619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               266, 117
               

               Conread position:
               273-630
               

               Cow position:
               chr5:34050234-34049874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               241
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               116, 231
               

               Conread position:
               273-630
               

               Cow position:
               chr5:39094666-39094318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               238
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               237, 98
               

               Conread position:
               273-631
               

               Cow position:
               chr5:4506849-4507197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               232
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               266, 99
               

               Conread position:
               273-636
               

               Cow position:
               chr5:61576661-61576298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               245
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               117, 142
               

               Conread position:
               279-636
               

               Cow position:
               chr5:3204938-3204594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               233
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               222, 14
               

               Conread position:
               280-457
               

               Cow position:
               chr5:1461198-1461018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               131
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               280-490
               

               Cow position:
               chr5:57561632-57561414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               153
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               280-568
               

               Cow position:
               chr5:36486602-36486312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               108, 19
               

               Conread position:
               280-609
               

               Cow position:
               chr5:56518113-56518423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               196, 95
               

               Conread position:
               280-617
               

               Cow position:
               chr5:54112022-54111696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               229
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               9, 24
               

               Conread position:
               280-619
               

               Cow position:
               chr5:37425852-37425519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               245
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               9, 24
               

               Conread position:
               280-624
               

               Cow position:
               chr5:32696714-32697042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 23
               

               Conread position:
               280-630
               

               Cow position:
               chr5:52644971-52645313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               201, 216
               

               Conread position:
               280-635
               

               Cow position:
               chr5:65588808-65588472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               119, 74
               

               Conread position:
               280-636
               

               Cow position:
               chr5:65886901-65887255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               192, 80
               

               Conread position:
               280-644
               

               Cow position:
               chr5:40711331-40711692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               250
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               114, 19
               

               Conread position:
               280-650
               

               Cow position:
               chr5:41129851-41129510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               260
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               346, 109
               

               Conread position:
               281-630
               

               Cow position:
               chr5:6045404-6045051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               246
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               59, 221
               

               Conread position:
               281-631
               

               Cow position:
               chr5:19905175-19905514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               170, 30
               

               Conread position:
               281-645
               

               Cow position:
               chr5:31918750-31918403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               200, 45
               

               Conread position:
               283-631
               

               Cow position:
               chr5:4617472-4617141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               65, 48
               

               Conread position:
               283-631
               

               Cow position:
               chr5:41609390-41609069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               240
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               216, 83
               

               Conread position:
               284-568
               

               Cow position:
               chr5:34168067-34167787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               195
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               92, 15
               

               Conread position:
               285-532
               

               Cow position:
               chr5:7755465-7755702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               192, 87
               

               Conread position:
               285-626
               

               Cow position:
               chr5:58793503-58793846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 224
               

               Conread position:
               285-631
               

               Cow position:
               chr5:29903419-29903758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               229
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               204, 105
               

               Conread position:
               285-647
               

               Cow position:
               chr5:46122249-46122604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               253
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               191, 94
               

               Conread position:
               286-484
               

               Cow position:
               chr5:46683848-46684044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               108, 63
               

               Conread position:
               287-487
               

               Cow position:
               chr5:48405075-48405278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               105, 38
               

               Conread position:
               287-535
               

               Cow position:
               chr5:65883670-65883919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               103, 214
               

               Conread position:
               288-607
               

               Cow position:
               chr5:32378948-32378657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               224
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               21, 29
               

               Conread position:
               288-629
               

               Cow position:
               chr5:61840289-61839954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               238
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               205, 96
               

               Conread position:
               290-630
               

               Cow position:
               chr5:25230913-25231249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               228
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               105, 40
               

               Conread position:
               293-609
               

               Cow position:
               chr5:740844-741161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 30
               

               Conread position:
               293-626
               

               Cow position:
               chr5:16509202-16508865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               244
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               51, 215
               

               Conread position:
               296-596
               

               Cow position:
               chr5:9390646-9390334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               210
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               94, 227
               

               Conread position:
               296-633
               

               Cow position:
               chr5:65593961-65593643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 7
               

               Conread position:
               296-659
               

               Cow position:
               chr5:73080298-73079945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               249
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               31, 167
               

               Conread position:
               297-620
               

               Cow position:
               chr5:50637913-50637605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               92, 41
               

               Conread position:
               297-628
               

               Cow position:
               chr5:50975994-50975654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               105, 214
               

               Conread position:
               297-630
               

               Cow position:
               chr5:31469501-31469818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               175, 62
               

               Conread position:
               298-623
               

               Cow position:
               chr5:38805253-38805572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               233
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               61, 160
               

               Conread position:
               298-625
               

               Cow position:
               chr5:55821463-55821138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               102, 82
               

               Conread position:
               298-630
               

               Cow position:
               chr5:48535888-48535571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               227
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               104, 51
               

               Conread position:
               299-490
               

               Cow position:
               chr5:33552334-33552513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               177, 5
               

               Conread position:
               299-604
               

               Cow position:
               chr5:29213028-29212739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               228
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               101, 28
               

               Conread position:
               299-624
               

               Cow position:
               chr5:34505836-34506155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               219
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               111, 136
               

               Conread position:
               299-626
               

               Cow position:
               chr5:47704036-47704366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               90, 112
               

               Conread position:
               299-630
               

               Cow position:
               chr5:24349197-24348876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 205
               

               Conread position:
               299-630
               

               Cow position:
               chr5:34528637-34528326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               235
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               177, 30
               

               Conread position:
               300-620
               

               Cow position:
               chr5:72173116-72172798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               82, 156
               

               Conread position:
               300-628
               

               Cow position:
               chr5:46234716-46235039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               214
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               105, 89
               

               Conread position:
               300-630
               

               Cow position:
               chr5:27548406-27548729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               210
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               101, 80
               

               Conread position:
               300-631
               

               Cow position:
               chr5:35209386-35209708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               235
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               93, 173
               

               Conread position:
               303-630
               

               Cow position:
               chr5:41951010-41951319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               92, 70
               

               Conread position:
               303-646
               

               Cow position:
               chr5:75436800-75437148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               231
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               97, 126
               

               Conread position:
               304-535
               

               Cow position:
               chr5:31144702-31144930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               91, 125
               

               Conread position:
               305-625
               

               Cow position:
               chr5:1276380-1276705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               221
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               5, 33
               

               Conread position:
               310-626
               

               Cow position:
               chr5:32153240-32153547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               212
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               87, 104
               

               Conread position:
               311-576
               

               Cow position:
               chr5:5879242-5879505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               163, 178
               

               Conread position:
               311-624
               

               Cow position:
               chr5:28926102-28926414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               90, 77
               

               Conread position:
               311-647
               

               Cow position:
               chr5:32140630-32140956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               235
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               87, 134
               

               Conread position:
               311-653
               

               Cow position:
               chr5:68872272-68871935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               62, 22
               

               Conread position:
               312-568
               

               Cow position:
               chr5:6670116-6670371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               60, 134
               

               Conread position:
               313-558
               

               Cow position:
               chr5:62985600-62985353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               87, 45
               

               Conread position:
               314-557
               

               Cow position:
               chr5:21920455-21920205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               84, 24
               

               Conread position:
               314-605
               

               Cow position:
               chr5:40039695-40039981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               217
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               76, 30
               

               Conread position:
               314-630
               

               Cow position:
               chr5:58229771-58229468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               293, 74
               

               Conread position:
               316-627
               

               Cow position:
               chr5:40387800-40388098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 20
               

               Conread position:
               316-636
               

               Cow position:
               chr5:45940536-45940848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               74, 143
               

               Conread position:
               317-631
               

               Cow position:
               chr5:32956023-32956326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 12
               

               Conread position:
               318-545
               

               Cow position:
               chr5:54154320-54154541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               136, 66
               

               Conread position:
               319-630
               

               Cow position:
               chr5:34885093-34885391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               320-479
               

               Cow position:
               chr5:34192977-34192811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               37, 135
               

               Conread position:
               320-480
               

               Cow position:
               chr5:72286846-72287005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               119
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               120, 74
               

               Conread position:
               320-612
               

               Cow position:
               chr5:21964358-21964076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               76, 181
               

               Conread position:
               320-622
               

               Cow position:
               chr5:56820192-56820487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 36
               

               Conread position:
               320-630
               

               Cow position:
               chr5:66815502-66815814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               212
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               172, 161
               

               Conread position:
               320-636
               

               Cow position:
               chr5:20554685-20554990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               219, 52
               

               Conread position:
               320-636
               

               Cow position:
               chr5:33414339-33414646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               70, 181
               

               Conread position:
               320-637
               

               Cow position:
               chr5:28330275-28330574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               206
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               321-630
               

               Cow position:
               chr5:13044324-13044646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               216
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               10, 22
               

               Conread position:
               322-597
               

               Cow position:
               chr5:45409390-45409123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               68, 172
               

               Conread position:
               322-630
               

               Cow position:
               chr5:23140522-23140808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               205
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               170, 55
               

               Conread position:
               322-644
               

               Cow position:
               chr5:2500112-2500431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               77, 154
               

               Conread position:
               324-625
               

               Cow position:
               chr5:9430400-9430689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               131, 65
               

               Conread position:
               326-628
               

               Cow position:
               chr5:3280809-3281101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               204
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               69, 92
               

               Conread position:
               327-626
               

               Cow position:
               chr5:55685628-55685331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               141, 162
               

               Conread position:
               327-637
               

               Cow position:
               chr5:29255123-29255431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               141, 163
               

               Conread position:
               328-630
               

               Cow position:
               chr5:27403168-27403479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               62, 179
               

               Conread position:
               330-630
               

               Cow position:
               chr5:10261174-10261472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               58, 123
               

               Conread position:
               332-555
               

               Cow position:
               chr5:23866114-23866326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               142, 59
               

               Conread position:
               332-564
               

               Cow position:
               chr5:12866761-12866998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               162
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               63, 179
               

               Conread position:
               332-565
               

               Cow position:
               chr5:3668955-3668727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               58, 93
               

               Conread position:
               332-607
               

               Cow position:
               chr5:35235652-35235921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               57, 126
               

               Conread position:
               332-630
               

               Cow position:
               chr5:3281892-3281596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               58, 177
               

               Conread position:
               332-630
               

               Cow position:
               chr5:54404833-54405130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               213
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               64, 17
               

               Conread position:
               332-630
               

               Cow position:
               chr5:56433858-56433566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               145, 41
               

               Conread position:
               332-640
               

               Cow position:
               chr5:42667330-42667633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               220
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               66, 106
               

               Conread position:
               332-640
               

               Cow position:
               chr5:54713674-54713983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               212
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               68, 163
               

               Conread position:
               333-611
               

               Cow position:
               chr5:47628828-47629105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               139, 165
               

               Conread position:
               333-626
               

               Cow position:
               chr5:28927529-28927824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               217
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               19, 168
               

               Conread position:
               333-630
               

               Cow position:
               chr5:43474902-43474612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               212
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               17, 56
               

               Conread position:
               333-639
               

               Cow position:
               chr5:65924634-65924943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               229
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               60, 14
               
UCSC Genome Browser
               Conread position:
               334-480
               

               Cow position:
               chr5:51800917-51801064 (view  custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               113
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               59, 0
               
UCSC Genome Browser
               
               
               
Conread position: 334-507

               
               
               
Cow position: chr5:24485378-24485557 (view  custom track)

               
               
               
Alignm length: 181

               
               
               
Alignm identity: 139

               
               
               
Alignm E-value: 4e-30

               
               
               
Alignm gaps (pig, cow): 7, 132
UCSC Genome Browser
               
               
               
Conread position: 334-568

               
               
               
Cow position: chr5:29979927-29980159 (view  custom track)

               
               
               
Alignm length: 242

               
               
               
Alignm identity: 181

               
               
               
Alignm E-value: 7e-36

               
               
               
Alignm gaps (pig, cow): 61, 142

               
               
               Conread position:335-616
               
               
               Cow position:chr5:49361938-49362211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):134, 93

               
               
               Conread position:335-622
               
               
               Cow position:chr5:1766295-1766572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):64, 128

               
               
               Conread position:335-644
               
               
               Cow position:chr5:34300973-34300676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):64, 169

               
               
               Conread position:335-657
               
               
               Cow position:chr5:55989799-55989477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):117, 64

               
               
               Conread position:336-629
               
               
               Cow position:chr5:56134910-56135203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 124

               
               
               Conread position:337-493
               
               
               Cow position:chr5:7921352-7921506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):139, 55

               
               
               Conread position:337-629
               
               
               Cow position:chr5:62826700-62826987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):53, 158

               
               
               Conread position:338-588
               
               
               Cow position:chr5:1027643-1027885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):140, 51

               
               
               Conread position:338-630
               
               
               Cow position:chr5:33080741-33081025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):65, 97

               
               
               Conread position:338-630
               
               
               Cow position:chr5:73967377-73967667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):70, 56

               
               
               Conread position:338-636
               
               
               Cow position:chr5:63566362-63566065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):62, 56

               
               
               Conread position:339-493
               
               
               Cow position:chr5:7140056-7140217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:339-629
               
               
               Cow position:chr5:42777815-42777530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):51, 176

               
               
               Conread position:340-497
               
               
               Cow position:chr5:60448265-60448105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):60, 54

               
               
               Conread position:340-607
               
               
               Cow position:chr5:60126422-60126161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):55, 155

               
               
               Conread position:340-630
               
               
               Cow position:chr5:14420299-14420580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):141, 37

               
               
               Conread position:340-659
               
               
               Cow position:chr5:34115702-34115399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):12, 19

               
               
               Conread position:342-626
               
               
               Cow position:chr5:44583088-44583349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):130, 7

               
               
               Conread position:342-630
               
               
               Cow position:chr5:21944445-21944146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:344-626
               
               
               Cow position:chr5:27015725-27015460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):133, 73

               
               
               Conread position:344-636
               
               
               Cow position:chr5:47888666-47888956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):128, 78

               
               
               Conread position:345-636
               
               
               Cow position:chr5:6086516-6086803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):132, 64

               
               
               Conread position:346-493
               
               
               Cow position:chr5:55849701-55849849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):53, 26

               
               
               Conread position:346-603
               
               
               Cow position:chr5:23753175-23753434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 31

               
               
               Conread position:346-626
               
               
               Cow position:chr5:66831667-66831945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):51, 159

               
               
               Conread position:346-630
               
               
               Cow position:chr5:16185131-16184854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):51, 44

               
               
               Conread position:346-644
               
               
               Cow position:chr5:37713851-37714154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):47, 114

               
               
               Conread position:346-652
               
               
               Cow position:chr5:71505171-71504870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):44, 81

               
               
               Conread position:347-550
               
               
               Cow position:chr5:71579218-71579018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 148

               
               
               Conread position:347-567
               
               
               Cow position:chr5:20345204-20344984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):53, 92

               
               
               Conread position:347-622
               
               
               Cow position:chr5:51490722-51490981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:347-624
               
               
               Cow position:chr5:59873370-59873635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):133, 47

               
               
               Conread position:347-626
               
               
               Cow position:chr5:49821182-49820911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):126, 61

               
               
               Conread position:347-628
               
               
               Cow position:chr5:43395107-43395370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):127, 41

               
               
               Conread position:347-630
               
               
               Cow position:chr5:30638821-30639085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):60, 47

               
               
               Conread position:349-490
               
               
               Cow position:chr5:56469782-56469929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:350-497
               
               
               Cow position:chr5:34483494-34483645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 130

               
               
               Conread position:350-600
               
               
               Cow position:chr5:8994526-8994771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):29, 148

               
               
               Conread position:350-626
               
               
               Cow position:chr5:38830963-38831225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):22, 35

               
               
               Conread position:351-568
               
               
               Cow position:chr5:17644616-17644829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):49, 143

               
               
               Conread position:351-631
               
               
               Cow position:chr5:46103910-46104172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):126, 22

               
               
               Conread position:352-637
               
               
               Cow position:chr5:21167095-21167368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 25

               
               
               Conread position:353-626
               
               
               Cow position:chr5:45037050-45036789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 41

               
               
               Conread position:354-637
               
               
               Cow position:chr5:59443213-59443493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):45, 88

               
               
               Conread position:356-630
               
               
               Cow position:chr5:51357468-51357739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):121, 140

               
               
               Conread position:357-631
               
               
               Cow position:chr5:19470158-19470419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):37, 50

               
               
               Conread position:360-479
               
               
               Cow position:chr5:59257920-59257802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:360-628
               
               
               Cow position:chr5:2288520-2288792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):116, 184

               
               
               Conread position:365-582
               
               
               Cow position:chr5:53145859-53146074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):21, 113

               
               
               Conread position:372-656
               
               
               Cow position:chr5:9083356-9083077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):84, 124

               
               
               Conread position:376-631
               
               
               Cow position:chr5:50950568-50950317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):20, 122

               
               
               Conread position:377-493
               
               
               Cow position:chr5:19294478-19294594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):9, 22

               
               
               Conread position:378-624
               
               
               Cow position:chr5:41303079-41303320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):86, 95

               
               
               Conread position:382-630
               
               
               Cow position:chr5:55942391-55942633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):5, 15

               
               
               Conread position:384-630
               
               
               Cow position:chr5:27690055-27690294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):98, 72

               
               
               Conread position:385-630
               
               
               Cow position:chr5:1398075-1398322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):66, 111

               
               
               Conread position:385-630
               
               
               Cow position:chr5:47313480-47313238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 115

               
               
               Conread position:385-637
               
               
               Cow position:chr5:73253097-73252854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):14, 109

               
               
               Conread position:388-637
               
               
               Cow position:chr5:72035085-72035327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):11, 115

               
               
               Conread position:390-607
               
               
               Cow position:chr5:62026949-62027158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):62, 86

               
               
               Conread position:393-624
               
               
               Cow position:chr5:34288476-34288699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):84, 94

               
               
               Conread position:395-630
               
               
               Cow position:chr5:49559160-49558924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 20

               
               
               Conread position:395-630
               
               
               Cow position:chr5:59297966-59298194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):145, 100

               
               
               Conread position:395-630
               
               
               Cow position:chr5:60520156-60519931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):9, 98

               
               
               Conread position:396-622
               
               
               Cow position:chr5:15426521-15426301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):80, 100

               
               
               Conread position:396-626
               
               
               Cow position:chr5:21525163-21524933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:396-626
               
               
               Cow position:chr5:45706038-45705816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:397-630
               
               
               Cow position:chr5:6987154-6986923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):58, 111

               
               
               Conread position:398-611
               
               
               Cow position:chr5:57271275-57271482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):141, 83

               
               
               Conread position:398-619
               
               
               Cow position:chr5:14415763-14415549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:398-621
               
               
               Cow position:chr5:18090714-18090501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 95

               
               
               Conread position:398-636
               
               
               Cow position:chr5:42748147-42747917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):83, 103

               
               
               Conread position:398-640
               
               
               Cow position:chr5:40356875-40357114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):73, 100

               
               
               Conread position:398-646
               
               
               Cow position:chr5:32963641-32963880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:399-626
               
               
               Cow position:chr5:72150236-72150019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):78, 89

               
               
               Conread position:399-630
               
               
               Cow position:chr5:30816708-30816480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):81, 95

               
               
               Conread position:400-631
               
               
               Cow position:chr5:20974456-20974680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):48, 95

               
               
               Conread position:400-644
               
               
               Cow position:chr5:33467054-33467289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):55, 97

               
               
               Conread position:402-628
               
               
               Cow position:chr5:31434247-31434032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):73, 27

               
               
               Conread position:402-644
               
               
               Cow position:chr5:3825073-3824848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):228, 53

               
               
               Conread position:404-630
               
               
               Cow position:chr5:9859730-9859953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):73, 46

               
               
               Conread position:405-639
               
               
               Cow position:chr5:56753711-56753483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):57, 93

               
               
               Conread position:407-630
               
               
               Cow position:chr5:63388775-63388559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):132, 58

               
               
               Conread position:408-639
               
               
               Cow position:chr5:58005231-58005000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):86, 49

               
               
               Conread position:409-637
               
               
               Cow position:chr5:50729473-50729253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):63, 22

               
               
               Conread position:413-644
               
               
               Cow position:chr5:6033209-6032989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):69, 26

               
               
               Conread position:416-633
               
               
               Cow position:chr5:48178705-48178914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:417-652
               
               
               Cow position:chr5:37366872-37366643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):58, 91

               
               
               Conread position:418-599
               
               
               Cow position:chr5:50870516-50870334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 79

               
               
               Conread position:419-630
               
               
               Cow position:chr5:63917441-63917645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 73

               
               
               Conread position:420-636
               
               
               Cow position:chr5:69099500-69099285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):57, 76

               
               
               Conread position:420-644
               
               
               Cow position:chr5:50864332-50864117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 38

               
               
               Conread position:432-644
               
               
               Cow position:chr5:24642770-24642971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 63
Show alignments to all cow chromosomes.
Conread position:	126-398
Cow position:	chr5:4267927-4267661 (view UCSC Genome Browser custom track)
Alignm length:	275
Alignm identity:	196
Alignm E-value:	3e-39
Alignm gaps (pig, cow):	35, 98
Conread position:	126-475
Cow position:	chr5:65140565-65140200 (view UCSC Genome Browser custom track)
Alignm length:	368
Alignm identity:	233
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	105, 148
Conread position:	126-479
Cow position:	chr5:5856126-5855777 (view UCSC Genome Browser custom track)
Alignm length:	359
Alignm identity:	236
Alignm E-value:	2e-34
Alignm gaps (pig, cow):	39, 270
Conread position:	127-387
Cow position:	chr5:11562465-11562721 (view UCSC Genome Browser custom track)
Alignm length:	263
Alignm identity:	174
Alignm E-value:	2e-24
Alignm gaps (pig, cow):	161, 19
Conread position:	130-452
Cow position:	chr5:20843146-20843464 (view UCSC Genome Browser custom track)
Alignm length:	332
Alignm identity:	222
Alignm E-value:	4e-29
Alignm gaps (pig, cow):	94, 18
Conread position:	130-653
Cow position:	chr5:53842555-53842035 (view UCSC Genome Browser custom track)
Alignm length:	544
Alignm identity:	376
Alignm E-value:	0
Alignm gaps (pig, cow):	25, 107
Conread position:	132-441
Cow position:	chr5:57156038-57156367 (view UCSC Genome Browser custom track)
Alignm length:	332
Alignm identity:	231
Alignm E-value:	9e-38
Alignm gaps (pig, cow):	31, 159
Conread position:	133-636
Cow position:	chr5:74643428-74643902 (view UCSC Genome Browser custom track)
Alignm length:	506
Alignm identity:	330
Alignm E-value:	1e-38
Alignm gaps (pig, cow):	149, 26
Conread position:	146-626
Cow position:	chr5:65776131-65776617 (view UCSC Genome Browser custom track)
Alignm length:	495
Alignm identity:	336
Alignm E-value:	0
Alignm gaps (pig, cow):	25, 75
Conread position:	151-362
Cow position:	chr5:44734485-44734698 (view UCSC Genome Browser custom track)
Alignm length:	214
Alignm identity:	149
Alignm E-value:	4e-29
Alignm gaps (pig, cow):	20, 0
Conread position:	154-446
Cow position:	chr5:66366744-66366449 (view UCSC Genome Browser custom track)
Alignm length:	299
Alignm identity:	191
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	89, 19
Conread position:	158-492
Cow position:	chr5:33560507-33560839 (view UCSC Genome Browser custom track)
Alignm length:	338
Alignm identity:	229
Alignm E-value:	4.00001e-41
Alignm gaps (pig, cow):	241, 11
Conread position:	158-626
Cow position:	chr5:56524393-56523943 (view UCSC Genome Browser custom track)
Alignm length:	477
Alignm identity:	314
Alignm E-value:	3e-39
Alignm gaps (pig, cow):	243, 11
Conread position:	159-384
Cow position:	chr5:47743855-47743635 (view UCSC Genome Browser custom track)
Alignm length:	228
Alignm identity:	163
Alignm E-value:	4e-30
Alignm gaps (pig, cow):	18, 74
Conread position:	159-417
Cow position:	chr5:52108029-52108296 (view UCSC Genome Browser custom track)
Alignm length:	271
Alignm identity:	182
Alignm E-value:	7e-25
Alignm gaps (pig, cow):	90, 10
Conread position:	159-452
Cow position:	chr5:41935424-41935721 (view UCSC Genome Browser custom track)
Alignm length:	306
Alignm identity:	205
Alignm E-value:	7e-25
Alignm gaps (pig, cow):	82, 17
Conread position:	159-489
Cow position:	chr5:18289349-18289027 (view UCSC Genome Browser custom track)
Alignm length:	335
Alignm identity:	236
Alignm E-value:	1.96182e-44
Alignm gaps (pig, cow):	241, 17
Conread position:	159-490
Cow position:	chr5:73167782-73168105 (view UCSC Genome Browser custom track)
Alignm length:	335
Alignm identity:	233
Alignm E-value:	1.99965e-42
Alignm gaps (pig, cow):	45, 50
Conread position:	159-567
Cow position:	chr5:41452459-41452839 (view UCSC Genome Browser custom track)
Alignm length:	414
Alignm identity:	275
Alignm E-value:	4e-29
Alignm gaps (pig, cow):	226, 72
Conread position:	159-601
Cow position:	chr5:24175583-24175164 (view UCSC Genome Browser custom track)
Alignm length:	455
Alignm identity:	321
Alignm E-value:	0
Alignm gaps (pig, cow):	175, 55