Cow genome map
| Conread name: | Ova1-OVRM10100E09 |
| Conread position: | 3-211 |
| Cow position: | chr1:12464670-12464462 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 121, 136 |
| Conread position: | 3-226 |
| Cow position: | chr1:20667748-20667532 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 107, 95 |
| Conread position: | 4-195 |
| Cow position: | chr1:43389053-43388867 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 4-196 |
| Cow position: | chr1:98030918-98031103 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 4-201 |
| Cow position: | chr1:58754799-58754605 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 121, 51 |
| Conread position: | 4-209 |
| Cow position: | chr1:41027070-41027273 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 127, 54 |
| Conread position: | 4-211 |
| Cow position: | chr1:81569033-81568826 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 106, 87 |
| Conread position: | 4-213 |
| Cow position: | chr1:45315641-45315426 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 4-214 |
| Cow position: | chr1:197010-196800 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-214 |
| Cow position: | chr1:25383664-25383875 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 107, 14 |
| Conread position: | 4-214 |
| Cow position: | chr1:55753220-55753013 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 107, 22 |
| Conread position: | 4-214 |
| Cow position: | chr1:65318570-65318783 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 88, 93 |
| Conread position: | 4-214 |
| Cow position: | chr1:81290502-81290710 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 128, 58 |
| Conread position: | 4-221 |
| Cow position: | chr1:81481387-81481173 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 4-222 |
| Cow position: | chr1:54156739-54156520 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 117, 59 |
| Conread position: | 4-222 |
| Cow position: | chr1:100573633-100573412 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 4-225 |
| Cow position: | chr1:61884908-61885130 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 79, 100 |
| Conread position: | 4-226 |
| Cow position: | chr1:42887282-42887061 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 94, 100 |
| Conread position: | 4-226 |
| Cow position: | chr1:43505524-43505741 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 105, 93 |
| Conread position: | 4-226 |
| Cow position: | chr1:46143466-46143249 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 178, 61 |
| Conread position: | 4-227 |
| Cow position: | chr1:68688578-68688798 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 4-228 |
| Cow position: | chr1:56618655-56618436 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 4-228 |
| Cow position: | chr1:64572510-64572736 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 4-230 |
| Cow position: | chr1:70538606-70538828 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 4-248 |
| Cow position: | chr1:54267942-54267701 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 88, 40 |
| Conread position: | 4-257 |
| Cow position: | chr1:1496537-1496277 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 82, 93 |
| Conread position: | 4-267 |
| Cow position: | chr1:78857334-78857067 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 105, 93 |
| Conread position: | 4-271 |
| Cow position: | chr1:24133065-24132802 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 136, 50 |
| Conread position: | 4-273 |
| Cow position: | chr1:83072436-83072708 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 121, 228 |
| Conread position: | 4-279 |
| Cow position: | chr1:1981118-1980841 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 135, 181 |
| Conread position: | 5-267 |
| Cow position: | chr1:35671538-35671799 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 222, 49 |
| Conread position: | 6-213 |
| Cow position: | chr1:84811942-84811736 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 6-214 |
| Cow position: | chr1:41056675-41056886 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 133, 193 |
| Conread position: | 6-222 |
| Cow position: | chr1:57575767-57575551 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 137, 127 |
| Conread position: | 7-259 |
| Cow position: | chr1:78096925-78097175 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 213, 0 |
| Conread position: | 8-213 |
| Cow position: | chr1:101714119-101714321 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 8-220 |
| Cow position: | chr1:20104265-20104478 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 85, 96 |
| Conread position: | 9-218 |
| Cow position: | chr1:78811038-78811248 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 17-279 |
| Cow position: | chr1:29935379-29935124 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 247, 105 |
| Conread position: | 18-231 |
| Cow position: | chr1:93590577-93590367 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 18-233 |
| Cow position: | chr1:55685969-55685751 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 106, 126 |
| Conread position: | 18-235 |
| Cow position: | chr1:70483325-70483106 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 193, 0 |
| Conread position: | 19-222 |
| Cow position: | chr1:50585868-50585661 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 23-218 |
| Cow position: | chr1:40303565-40303758 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 87, 66 |
| Conread position: | 23-234 |
| Cow position: | chr1:55229990-55230199 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 85, 63 |
| Conread position: | 27-258 |
| Cow position: | chr1:99637236-99637002 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 83, 66 |
| Conread position: | 30-214 |
| Cow position: | chr1:42175748-42175934 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 31-235 |
| Cow position: | chr1:5010814-5010607 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 55, 201 |
| Conread position: | 32-226 |
| Cow position: | chr1:79631512-79631314 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 31 |
| Conread position: | 43-234 |
| Cow position: | chr1:100823071-100823266 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 49, 62 |
| Conread position: | 56-218 |
| Cow position: | chr1:82537974-82538137 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 56-232 |
| Cow position: | chr1:89388391-89388565 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 56-248 |
| Cow position: | chr1:62469107-62469297 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 55, 47 |
| Conread position: | 56-287 |
| Cow position: | chr1:30028185-30027956 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 57, 47 |
| Conread position: | 57-267 |
| Cow position: | chr1:23101723-23101937 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 60-213 |
| Cow position: | chr1:10470477-10470627 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 60-218 |
| Cow position: | chr1:63460929-63461088 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 63-213 |
| Cow position: | chr1:80423678-80423527 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 66-213 |
| Cow position: | chr1:50906623-50906476 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 44, 32 |
| Conread position: | 70-227 |
| Cow position: | chr1:6731241-6731399 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 43, 30 |
| Conread position: | 71-270 |
| Cow position: | chr1:40212282-40212089 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 113, 61 |
Show alignments to all cow chromosomes.