Cow genome map
| Conread name: | Ova1-OVRM10100E09 |
| Conread position: | 3-212 |
| Cow position: | chr11:33409291-33409084 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 95, 101 |
| Conread position: | 3-213 |
| Cow position: | chr11:21885804-21886013 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 140, 70 |
| Conread position: | 3-221 |
| Cow position: | chr11:17676402-17676184 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-196 |
| Cow position: | chr11:34121170-34121361 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 84, 92 |
| Conread position: | 4-205 |
| Cow position: | chr11:17036556-17036357 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 4-209 |
| Cow position: | chr11:42160082-42159883 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 4-213 |
| Cow position: | chr11:29960270-29960475 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 4-214 |
| Cow position: | chr11:17721830-17721617 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 4-214 |
| Cow position: | chr11:69977942-69978149 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 175, 0 |
| Conread position: | 4-221 |
| Cow position: | chr11:52380900-52380681 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 4-222 |
| Cow position: | chr11:897645-897856 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 182, 129 |
| Conread position: | 4-222 |
| Cow position: | chr11:35213196-35212978 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 144, 173 |
| Conread position: | 4-222 |
| Cow position: | chr11:46922914-46922695 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 4-224 |
| Cow position: | chr11:83043391-83043173 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 4-228 |
| Cow position: | chr11:48085890-48086118 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 58, 101 |
| Conread position: | 4-229 |
| Cow position: | chr11:30830642-30830423 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 211, 93 |
| Conread position: | 4-230 |
| Cow position: | chr11:48296005-48296226 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 211, 50 |
| Conread position: | 4-232 |
| Cow position: | chr11:80564265-80564500 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 129, 99 |
| Conread position: | 4-234 |
| Cow position: | chr11:55052843-55053066 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 4-234 |
| Cow position: | chr11:63866687-63866458 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 106, 22 |
| Conread position: | 4-235 |
| Cow position: | chr11:62620348-62620581 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 4-237 |
| Cow position: | chr11:7874110-7874347 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 88, 101 |
| Conread position: | 4-237 |
| Cow position: | chr11:39060630-39060395 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 209, 99 |
| Conread position: | 4-241 |
| Cow position: | chr11:40608622-40608383 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 142, 54 |
| Conread position: | 4-257 |
| Cow position: | chr11:17860184-17859924 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 4-271 |
| Cow position: | chr11:27248465-27248736 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 104, 50 |
| Conread position: | 4-288 |
| Cow position: | chr11:30165482-30165766 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 14, 19 |
| Conread position: | 4-298 |
| Cow position: | chr11:63999116-63998826 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 95, 18 |
| Conread position: | 5-210 |
| Cow position: | chr11:81135195-81134989 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 5-213 |
| Cow position: | chr11:2917613-2917410 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 5-223 |
| Cow position: | chr11:67614949-67614731 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 206, 127 |
| Conread position: | 5-226 |
| Cow position: | chr11:80556195-80556413 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 126, 49 |
| Conread position: | 5-260 |
| Cow position: | chr11:77745279-77745019 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 108, 81 |
| Conread position: | 6-214 |
| Cow position: | chr11:35580234-35580445 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 6-222 |
| Cow position: | chr11:20238650-20238867 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 117, 212 |
| Conread position: | 7-219 |
| Cow position: | chr11:67600759-67600967 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 102, 91 |
| Conread position: | 7-226 |
| Cow position: | chr11:15017031-15017252 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 118, 213 |
| Conread position: | 8-214 |
| Cow position: | chr11:68913116-68913327 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 8-226 |
| Cow position: | chr11:27746899-27747113 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 9-249 |
| Cow position: | chr11:1625247-1624998 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 103, 91 |
| Conread position: | 10-272 |
| Cow position: | chr11:62239722-62239987 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 203, 144 |
| Conread position: | 18-213 |
| Cow position: | chr11:44031997-44032189 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 18-213 |
| Cow position: | chr11:62812964-62812769 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 179, 161 |
| Conread position: | 56-214 |
| Cow position: | chr11:56114964-56115121 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 42, 48 |
| Conread position: | 56-267 |
| Cow position: | chr11:44615144-44614930 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 159 |
| Conread position: | 58-213 |
| Cow position: | chr11:30986664-30986819 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 62-234 |
| Cow position: | chr11:65431548-65431721 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 63-290 |
| Cow position: | chr11:36847198-36847430 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 23, 183 |
| Conread position: | 66-234 |
| Cow position: | chr11:70821078-70821248 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 86, 37 |
| Conread position: | 76-229 |
| Cow position: | chr11:63977101-63977254 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.