Cow genome map
| Conread name: | Ova1-OVRM10100E09 |
| Conread position: | 1-261 |
| Cow position: | chr13:17021730-17021994 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 178, 15 |
| Conread position: | 3-177 |
| Cow position: | chr13:20666392-20666563 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 3-213 |
| Cow position: | chr13:151960-151757 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 3-214 |
| Cow position: | chr13:42200616-42200406 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 3-217 |
| Cow position: | chr13:17292139-17292345 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 108, 42 |
| Conread position: | 3-233 |
| Cow position: | chr13:14063524-14063754 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-251 |
| Cow position: | chr13:53850822-53850569 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 231 |
| Conread position: | 3-267 |
| Cow position: | chr13:49022871-49023134 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 215, 119 |
| Conread position: | 4-205 |
| Cow position: | chr13:971902-972102 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 146, 54 |
| Conread position: | 4-208 |
| Cow position: | chr13:35557115-35557319 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-211 |
| Cow position: | chr13:20784586-20784383 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 4-212 |
| Cow position: | chr13:36877056-36876853 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 4-213 |
| Cow position: | chr13:15288929-15289132 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 90, 28 |
| Conread position: | 4-214 |
| Cow position: | chr13:5263285-5263493 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 88, 93 |
| Conread position: | 4-214 |
| Cow position: | chr13:8450326-8450119 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 81, 85 |
| Conread position: | 4-218 |
| Cow position: | chr13:6974157-6973944 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 107, 94 |
| Conread position: | 4-218 |
| Cow position: | chr13:14576209-14575996 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 88, 107 |
| Conread position: | 4-218 |
| Cow position: | chr13:19610571-19610783 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 107, 50 |
| Conread position: | 4-219 |
| Cow position: | chr13:41806768-41806557 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 4-221 |
| Cow position: | chr13:18166728-18166511 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-221 |
| Cow position: | chr13:19883041-19883255 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 4-221 |
| Cow position: | chr13:34261230-34261013 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 26, 97 |
| Conread position: | 4-222 |
| Cow position: | chr13:20314626-20314847 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 4-226 |
| Cow position: | chr13:20534891-20534673 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 218, 22 |
| Conread position: | 4-226 |
| Cow position: | chr13:34281671-34281455 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 153, 50 |
| Conread position: | 4-226 |
| Cow position: | chr13:54389025-54389247 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 201, 175 |
| Conread position: | 4-230 |
| Cow position: | chr13:18058254-18058477 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 4-230 |
| Cow position: | chr13:25926786-25926558 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 106, 82 |
| Conread position: | 4-230 |
| Cow position: | chr13:38035831-38035608 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 208, 52 |
| Conread position: | 4-234 |
| Cow position: | chr13:17569106-17569333 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 214, 34 |
| Conread position: | 4-234 |
| Cow position: | chr13:54702182-54701947 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 86, 176 |
| Conread position: | 4-240 |
| Cow position: | chr13:21170524-21170290 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 41, 108 |
| Conread position: | 4-246 |
| Cow position: | chr13:5671590-5671834 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 214, 0 |
| Conread position: | 4-256 |
| Cow position: | chr13:20473686-20473931 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 244, 128 |
| Conread position: | 5-216 |
| Cow position: | chr13:20288330-20288120 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 52, 36 |
| Conread position: | 5-230 |
| Cow position: | chr13:15239519-15239742 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 126, 54 |
| Conread position: | 6-205 |
| Cow position: | chr13:46329612-46329808 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 102, 94 |
| Conread position: | 6-209 |
| Cow position: | chr13:20217404-20217607 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-213 |
| Cow position: | chr13:52477655-52477858 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 6-214 |
| Cow position: | chr13:55674214-55674424 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 6-218 |
| Cow position: | chr13:38329610-38329400 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 6-221 |
| Cow position: | chr13:13320791-13320574 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 7-214 |
| Cow position: | chr13:21288092-21288299 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 87, 99 |
| Conread position: | 8-217 |
| Cow position: | chr13:25817518-25817312 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 14-264 |
| Cow position: | chr13:17223310-17223056 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 78, 150 |
| Conread position: | 16-230 |
| Cow position: | chr13:33854700-33854910 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 18-222 |
| Cow position: | chr13:22601713-22601908 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 20-213 |
| Cow position: | chr13:52913853-52913663 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 91, 80 |
| Conread position: | 23-226 |
| Cow position: | chr13:3153727-3153521 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 87, 70 |
| Conread position: | 37-266 |
| Cow position: | chr13:26316923-26317158 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 56-218 |
| Cow position: | chr13:55775304-55775145 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 144, 25 |
| Conread position: | 56-227 |
| Cow position: | chr13:23478846-23478673 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 56-234 |
| Cow position: | chr13:23823090-23823264 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 56-243 |
| Cow position: | chr13:43342512-43342326 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 93, 47 |
| Conread position: | 63-226 |
| Cow position: | chr13:34532995-34533154 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 23, 42 |
| Conread position: | 63-264 |
| Cow position: | chr13:57770049-57770249 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 149, 68 |
Show alignments to all cow chromosomes.