Cow genome map
| Conread name: | Ova1-OVRM10100E09 |
| Conread position: | 1-230 |
| Cow position: | chr17:36814388-36814623 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 85, 96 |
| Conread position: | 1-234 |
| Cow position: | chr17:12325738-12325508 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 85, 103 |
| Conread position: | 3-210 |
| Cow position: | chr17:21114925-21114718 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-213 |
| Cow position: | chr17:39606459-39606662 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 3-217 |
| Cow position: | chr17:24786994-24786781 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 31, 76 |
| Conread position: | 4-209 |
| Cow position: | chr17:31037347-31037141 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 134, 190 |
| Conread position: | 4-214 |
| Cow position: | chr17:24587654-24587864 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 107, 96 |
| Conread position: | 4-214 |
| Cow position: | chr17:24883541-24883329 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 105, 93 |
| Conread position: | 4-214 |
| Cow position: | chr17:33288627-33288417 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-214 |
| Cow position: | chr17:33933715-33933507 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 192, 105 |
| Conread position: | 4-214 |
| Cow position: | chr17:37341007-37340790 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 4-218 |
| Cow position: | chr17:17059454-17059663 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 4-218 |
| Cow position: | chr17:25128323-25128109 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-218 |
| Cow position: | chr17:25511275-25511487 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 94, 65 |
| Conread position: | 4-218 |
| Cow position: | chr17:29084204-29084412 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 4-220 |
| Cow position: | chr17:946387-946603 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-221 |
| Cow position: | chr17:5372497-5372283 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 207, 126 |
| Conread position: | 4-222 |
| Cow position: | chr17:1634462-1634245 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 4-222 |
| Cow position: | chr17:21003796-21003582 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 4-222 |
| Cow position: | chr17:30713375-30713595 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 128, 89 |
| Conread position: | 4-222 |
| Cow position: | chr17:32138394-32138168 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 120, 210 |
| Conread position: | 4-225 |
| Cow position: | chr17:9824699-9824919 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 90, 101 |
| Conread position: | 4-226 |
| Cow position: | chr17:25126380-25126597 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 106, 94 |
| Conread position: | 4-228 |
| Cow position: | chr17:43315256-43315035 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 105, 27 |
| Conread position: | 4-229 |
| Cow position: | chr17:20157637-20157862 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 106, 94 |
| Conread position: | 4-229 |
| Cow position: | chr17:24824272-24824502 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 112, 183 |
| Conread position: | 4-229 |
| Cow position: | chr17:40276770-40276992 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 136, 177 |
| Conread position: | 4-230 |
| Cow position: | chr17:17034979-17035203 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 4-230 |
| Cow position: | chr17:25616280-25616501 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 184, 54 |
| Conread position: | 4-232 |
| Cow position: | chr17:21039587-21039814 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 104, 93 |
| Conread position: | 4-234 |
| Cow position: | chr17:7959210-7959441 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 84 |
| Conread position: | 4-235 |
| Cow position: | chr17:20929271-20929505 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 106, 94 |
| Conread position: | 4-237 |
| Cow position: | chr17:4817558-4817795 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 105, 46 |
| Conread position: | 4-238 |
| Cow position: | chr17:32419086-32418852 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-244 |
| Cow position: | chr17:11912473-11912235 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 4-245 |
| Cow position: | chr17:25612120-25612358 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 4-246 |
| Cow position: | chr17:25800852-25800612 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 42, 96 |
| Conread position: | 4-283 |
| Cow position: | chr17:18934290-18934565 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 242, 59 |
| Conread position: | 5-239 |
| Cow position: | chr17:34791034-34790798 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 5-249 |
| Cow position: | chr17:42150422-42150665 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 204, 94 |
| Conread position: | 6-190 |
| Cow position: | chr17:18473196-18473380 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 139, 37 |
| Conread position: | 6-213 |
| Cow position: | chr17:32333059-32332852 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 118, 176 |
| Conread position: | 6-218 |
| Cow position: | chr17:25473248-25473036 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 105, 97 |
| Conread position: | 6-234 |
| Cow position: | chr17:3577571-3577791 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 204, 97 |
| Conread position: | 6-249 |
| Cow position: | chr17:31563650-31563407 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 94, 20 |
| Conread position: | 7-209 |
| Cow position: | chr17:25901232-25901444 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 7-214 |
| Cow position: | chr17:20022481-20022273 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 7-229 |
| Cow position: | chr17:32989509-32989730 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 201, 180 |
| Conread position: | 7-229 |
| Cow position: | chr17:32993591-32993372 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 180, 0 |
| Conread position: | 7-232 |
| Cow position: | chr17:6318834-6318609 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-218 |
| Cow position: | chr17:908774-908984 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 86, 96 |
| Conread position: | 8-221 |
| Cow position: | chr17:40412617-40412829 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 174, 110 |
| Conread position: | 8-230 |
| Cow position: | chr17:29995402-29995178 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 8-241 |
| Cow position: | chr17:33155120-33154889 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 202, 19 |
| Conread position: | 13-257 |
| Cow position: | chr17:25117923-25118175 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 18-214 |
| Cow position: | chr17:21676934-21677132 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 20-230 |
| Cow position: | chr17:39963923-39964135 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 66, 77 |
| Conread position: | 21-213 |
| Cow position: | chr17:10016326-10016517 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 78, 69 |
| Conread position: | 24-209 |
| Cow position: | chr17:7711487-7711672 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 75, 81 |
| Conread position: | 26-230 |
| Cow position: | chr17:6761796-6761597 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 30-201 |
| Cow position: | chr17:24767232-24767060 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 56-218 |
| Cow position: | chr17:22051508-22051346 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-230 |
| Cow position: | chr17:19544150-19543973 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 56-230 |
| Cow position: | chr17:30977102-30977274 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 154, 82 |
| Conread position: | 56-233 |
| Cow position: | chr17:9260530-9260352 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 73, 170 |
| Conread position: | 57-234 |
| Cow position: | chr17:27606600-27606776 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 43 |
| Conread position: | 58-277 |
| Cow position: | chr17:21718913-21718690 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 69-224 |
| Cow position: | chr17:8809410-8809256 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 141, 69 |
| Conread position: | 70-217 |
| Cow position: | chr17:26575127-26574978 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 75-221 |
| Cow position: | chr17:22223816-22223962 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.