Cow genome map
| Conread name: | Ova1-OVRM10100E09 |
| Conread position: | 1-260 |
| Cow position: | chr3:15160482-15160743 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 112, 102 |
| Conread position: | 3-233 |
| Cow position: | chr3:75107738-75107966 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 105, 97 |
| Conread position: | 3-234 |
| Cow position: | chr3:59604810-59605038 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 4-170 |
| Cow position: | chr3:82123583-82123418 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 13, 101 |
| Conread position: | 4-201 |
| Cow position: | chr3:74079671-74079475 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 4-211 |
| Cow position: | chr3:10958275-10958071 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 96, 102 |
| Conread position: | 4-213 |
| Cow position: | chr3:7331158-7330963 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 4-213 |
| Cow position: | chr3:53221977-53222187 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 34, 94 |
| Conread position: | 4-213 |
| Cow position: | chr3:70762155-70761948 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 137, 50 |
| Conread position: | 4-214 |
| Cow position: | chr3:19585829-19586040 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 141, 59 |
| Conread position: | 4-214 |
| Cow position: | chr3:23132204-23131992 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 4-214 |
| Cow position: | chr3:39969898-39969687 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 4-214 |
| Cow position: | chr3:54506672-54506882 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 125, 145 |
| Conread position: | 4-218 |
| Cow position: | chr3:60264751-60264543 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 4-222 |
| Cow position: | chr3:68004737-68004524 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 4-222 |
| Cow position: | chr3:78077150-78077373 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 79, 218 |
| Conread position: | 4-225 |
| Cow position: | chr3:83441926-83441707 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 117, 77 |
| Conread position: | 4-226 |
| Cow position: | chr3:15973531-15973758 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 88, 93 |
| Conread position: | 4-229 |
| Cow position: | chr3:23105397-23105175 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 4-229 |
| Cow position: | chr3:55177781-55177560 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 4-229 |
| Cow position: | chr3:59610753-59610528 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 128, 151 |
| Conread position: | 4-233 |
| Cow position: | chr3:22165450-22165220 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 126, 54 |
| Conread position: | 4-234 |
| Cow position: | chr3:40213068-40212840 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 88, 19 |
| Conread position: | 4-234 |
| Cow position: | chr3:48072917-48072688 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 219, 173 |
| Conread position: | 4-237 |
| Cow position: | chr3:3883850-3883620 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 206, 86 |
| Conread position: | 4-257 |
| Cow position: | chr3:50768644-50768900 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 4-267 |
| Cow position: | chr3:69785660-69785389 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 5-234 |
| Cow position: | chr3:22924409-22924184 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 6-173 |
| Cow position: | chr3:70565771-70565599 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 93, 98 |
| Conread position: | 6-209 |
| Cow position: | chr3:14546969-14547170 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 95, 81 |
| Conread position: | 6-214 |
| Cow position: | chr3:15950946-15950741 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 176, 94 |
| Conread position: | 6-214 |
| Cow position: | chr3:78092544-78092335 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 146, 97 |
| Conread position: | 6-216 |
| Cow position: | chr3:49344660-49344870 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 117, 176 |
| Conread position: | 6-234 |
| Cow position: | chr3:64196793-64197022 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 7-296 |
| Cow position: | chr3:9663204-9662912 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 101, 90 |
| Conread position: | 8-234 |
| Cow position: | chr3:55189785-55189553 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 223 |
| Conread position: | 8-235 |
| Cow position: | chr3:53428948-53428719 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 8-263 |
| Cow position: | chr3:49363078-49363333 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 205, 124 |
| Conread position: | 13-279 |
| Cow position: | chr3:67407392-67407126 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 253, 235 |
| Conread position: | 17-257 |
| Cow position: | chr3:77171293-77171537 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 75, 203 |
| Conread position: | 55-213 |
| Cow position: | chr3:8523138-8522979 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 95, 48 |
| Conread position: | 56-214 |
| Cow position: | chr3:43896043-43895887 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 56-214 |
| Cow position: | chr3:52845573-52845731 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-218 |
| Cow position: | chr3:31361442-31361603 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 42, 48 |
| Conread position: | 56-238 |
| Cow position: | chr3:75966767-75966582 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 44, 176 |
| Conread position: | 57-214 |
| Cow position: | chr3:77098805-77098648 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 46 |
| Conread position: | 58-213 |
| Cow position: | chr3:48363091-48363244 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 53, 45 |
| Conread position: | 63-238 |
| Cow position: | chr3:68587046-68587219 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 47, 36 |
| Conread position: | 69-230 |
| Cow position: | chr3:27274558-27274719 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.