Cow genome map
| Conread name: | Ova1-OVRM10100E09 |
| Conread position: | 3-214 |
| Cow position: | chr9:45285494-45285710 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 104, 97 |
| Conread position: | 3-225 |
| Cow position: | chr9:14738290-14738070 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 83, 94 |
| Conread position: | 3-229 |
| Cow position: | chr9:6189323-6189549 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 5, 150 |
| Conread position: | 3-292 |
| Cow position: | chr9:8992138-8992434 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 109, 83 |
| Conread position: | 3-302 |
| Cow position: | chr9:63361678-63361967 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 216 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 246, 100 |
| Conread position: | 4-199 |
| Cow position: | chr9:54493175-54492982 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 4-212 |
| Cow position: | chr9:17872070-17872276 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 4-214 |
| Cow position: | chr9:11098416-11098622 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 4-214 |
| Cow position: | chr9:13169623-13169836 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 103, 96 |
| Conread position: | 4-214 |
| Cow position: | chr9:17840638-17840850 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 4-214 |
| Cow position: | chr9:43757581-43757373 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 43, 64 |
| Conread position: | 4-217 |
| Cow position: | chr9:23955940-23956151 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 4-217 |
| Cow position: | chr9:24887246-24887031 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 4-219 |
| Cow position: | chr9:37199167-37198951 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 146, 128 |
| Conread position: | 4-226 |
| Cow position: | chr9:39011429-39011650 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 117, 177 |
| Conread position: | 4-227 |
| Cow position: | chr9:9460021-9459805 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 4-229 |
| Cow position: | chr9:5104363-5104597 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 125, 61 |
| Conread position: | 4-229 |
| Cow position: | chr9:26279129-26279359 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 4-230 |
| Cow position: | chr9:42586516-42586734 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 4-233 |
| Cow position: | chr9:4341119-4341347 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 223, 130 |
| Conread position: | 4-233 |
| Cow position: | chr9:28747480-28747708 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 83, 87 |
| Conread position: | 4-234 |
| Cow position: | chr9:34286839-34286606 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 106, 94 |
| Conread position: | 4-238 |
| Cow position: | chr9:26477256-26477016 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 105, 82 |
| Conread position: | 4-242 |
| Cow position: | chr9:33347450-33347682 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 128, 94 |
| Conread position: | 4-244 |
| Cow position: | chr9:41728298-41728060 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 127, 71 |
| Conread position: | 4-251 |
| Cow position: | chr9:59013302-59013545 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 4-255 |
| Cow position: | chr9:8628878-8629125 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 227, 54 |
| Conread position: | 5-249 |
| Cow position: | chr9:41785249-41785013 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 210, 103 |
| Conread position: | 6-213 |
| Cow position: | chr9:56453374-56453176 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 6-214 |
| Cow position: | chr9:57131533-57131327 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 103, 94 |
| Conread position: | 6-218 |
| Cow position: | chr9:36628156-36627947 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 6-257 |
| Cow position: | chr9:33584647-33584897 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 210, 0 |
| Conread position: | 7-234 |
| Cow position: | chr9:18380899-18380678 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 103, 47 |
| Conread position: | 8-219 |
| Cow position: | chr9:26344932-26345138 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 112, 89 |
| Conread position: | 9-218 |
| Cow position: | chr9:34024734-34024524 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 102, 94 |
| Conread position: | 10-209 |
| Cow position: | chr9:43159787-43159589 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 16 |
| Conread position: | 12-216 |
| Cow position: | chr9:12773721-12773521 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 18-215 |
| Cow position: | chr9:34707286-34707482 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 92, 60 |
| Conread position: | 18-218 |
| Cow position: | chr9:42508858-42508653 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 58, 90 |
| Conread position: | 19-214 |
| Cow position: | chr9:19718315-19718505 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 20-213 |
| Cow position: | chr9:40603692-40603497 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 27-222 |
| Cow position: | chr9:32052293-32052097 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 30-228 |
| Cow position: | chr9:19771376-19771176 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 55 |
| Conread position: | 32-231 |
| Cow position: | chr9:8834115-8834317 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 78, 66 |
| Conread position: | 32-249 |
| Cow position: | chr9:28315441-28315217 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 65 |
| Conread position: | 56-211 |
| Cow position: | chr9:45740154-45740312 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 56-222 |
| Cow position: | chr9:51620433-51620265 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 56-222 |
| Cow position: | chr9:59897581-59897417 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 56-230 |
| Cow position: | chr9:12269018-12268846 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 165, 52 |
| Conread position: | 56-230 |
| Cow position: | chr9:28773127-28772955 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 56-238 |
| Cow position: | chr9:53323796-53323980 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 80, 158 |
| Conread position: | 56-275 |
| Cow position: | chr9:34423609-34423388 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 30, 49 |
| Conread position: | 57-225 |
| Cow position: | chr9:20579607-20579771 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 53, 41 |
| Conread position: | 63-294 |
| Cow position: | chr9:6205360-6205591 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 42 |
Show alignments to all cow chromosomes.