Cow genome map
| Conread name: | Ova1-OVRM10105C05 |
| Conread position: | 1-192 |
| Cow position: | chr16:17057746-17057936 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 17 |
| Conread position: | 2-133 |
| Cow position: | chr16:2411848-2411980 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 2-214 |
| Cow position: | chr16:27734683-27734896 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 2-240 |
| Cow position: | chr16:42740300-42740533 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 100 |
| Conread position: | 2-253 |
| Cow position: | chr16:6549400-6549649 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 79 |
| Conread position: | 2-275 |
| Cow position: | chr16:10437376-10437106 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 2-311 |
| Cow position: | chr16:15491829-15491527 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 28, 182 |
| Conread position: | 2-323 |
| Cow position: | chr16:24881566-24881894 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 2-325 |
| Cow position: | chr16:4303349-4303670 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 2-325 |
| Cow position: | chr16:5918606-5918274 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 37, 114 |
| Conread position: | 2-325 |
| Cow position: | chr16:6942744-6942415 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 2-325 |
| Cow position: | chr16:32605949-32605618 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 37, 215 |
| Conread position: | 2-355 |
| Cow position: | chr16:31592785-31593140 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 113 |
| Conread position: | 2-360 |
| Cow position: | chr16:23253382-23253729 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 90 |
| Conread position: | 2-375 |
| Cow position: | chr16:25341090-25340729 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 32 |
| Conread position: | 2-430 |
| Cow position: | chr16:28471974-28472398 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 279 |
| Conread position: | 2-431 |
| Cow position: | chr16:2484018-2484440 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 32 |
| Conread position: | 2-431 |
| Cow position: | chr16:7676575-7676997 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 32 |
| Conread position: | 2-431 |
| Cow position: | chr16:7905764-7905360 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 46 |
| Conread position: | 2-431 |
| Cow position: | chr16:9777253-9776834 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 247 |
| Conread position: | 2-431 |
| Cow position: | chr16:10204292-10204719 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 47 |
| Conread position: | 2-431 |
| Cow position: | chr16:11052289-11051891 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 21 |
| Conread position: | 2-431 |
| Cow position: | chr16:15183925-15183504 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 32 |
| Conread position: | 2-431 |
| Cow position: | chr16:15565872-15565450 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 252 |
| Conread position: | 2-431 |
| Cow position: | chr16:20255189-20255601 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 94 |
| Conread position: | 2-431 |
| Cow position: | chr16:25440740-25440313 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 280 |
| Conread position: | 2-431 |
| Cow position: | chr16:25458349-25458777 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 280 |
| Conread position: | 2-431 |
| Cow position: | chr16:40297054-40297476 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 70 |
| Conread position: | 2-458 |
| Cow position: | chr16:1430349-1429884 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 297 |
| Conread position: | 2-458 |
| Cow position: | chr16:8816983-8817439 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 279 |
| Conread position: | 2-458 |
| Cow position: | chr16:12538803-12539257 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 252 |
| Conread position: | 2-472 |
| Cow position: | chr16:19713728-19714183 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 2-474 |
| Cow position: | chr16:29676184-29676646 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 114 |
| Conread position: | 2-476 |
| Cow position: | chr16:28171237-28171745 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 335 |
| Conread position: | 2-478 |
| Cow position: | chr16:29032038-29031564 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 198 |
| Conread position: | 2-479 |
| Cow position: | chr16:407911-408385 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 2-483 |
| Cow position: | chr16:10376152-10376650 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 330 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 122, 32 |
| Conread position: | 2-484 |
| Cow position: | chr16:18688007-18688486 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 53 |
| Conread position: | 2-488 |
| Cow position: | chr16:2728191-2728677 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 279 |
| Conread position: | 3-238 |
| Cow position: | chr16:9457647-9457415 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 35, 89 |
| Conread position: | 3-277 |
| Cow position: | chr16:14669415-14669140 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 3-325 |
| Cow position: | chr16:25157096-25157419 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 195 |
| Conread position: | 3-375 |
| Cow position: | chr16:43898146-43898515 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 156 |
| Conread position: | 3-458 |
| Cow position: | chr16:16687994-16687536 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 215 |
| Conread position: | 3-474 |
| Cow position: | chr16:32935258-32934789 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 17 |
| Conread position: | 4-476 |
| Cow position: | chr16:55111727-55112201 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 318 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 40, 83 |
| Conread position: | 6-274 |
| Cow position: | chr16:14422834-14422566 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 16, 118 |
| Conread position: | 6-474 |
| Cow position: | chr16:36232488-36232952 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 113 |
| Conread position: | 6-480 |
| Cow position: | chr16:49235997-49236471 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 108 |
| Conread position: | 6-484 |
| Cow position: | chr16:25084740-25084260 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 172 |
| Conread position: | 7-228 |
| Cow position: | chr16:36282513-36282291 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 124, 23 |
| Conread position: | 8-431 |
| Cow position: | chr16:54647442-54647042 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 292 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 31, 98 |
| Conread position: | 10-480 |
| Cow position: | chr16:44965172-44964700 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 306 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 6, 52 |
| Conread position: | 10-483 |
| Cow position: | chr16:5660974-5660482 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 115 |
| Conread position: | 12-225 |
| Cow position: | chr16:26662859-26662651 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 12-431 |
| Cow position: | chr16:1568342-1568746 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 20 |
| Conread position: | 12-460 |
| Cow position: | chr16:29046132-29045695 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 124 |
| Conread position: | 12-484 |
| Cow position: | chr16:31860-31370 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 333 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 27, 70 |
| Conread position: | 13-221 |
| Cow position: | chr16:23982422-23982213 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 161 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 13-277 |
| Cow position: | chr16:15369544-15369287 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 46 |
| Conread position: | 13-294 |
| Cow position: | chr16:5888593-5888328 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 13-325 |
| Cow position: | chr16:21185392-21185074 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 14-472 |
| Cow position: | chr16:29982376-29981924 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 15 |
| Conread position: | 15-293 |
| Cow position: | chr16:31376135-31376399 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 225, 35 |
| Conread position: | 15-443 |
| Cow position: | chr16:9929666-9929246 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 299 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 17, 174 |
| Conread position: | 23-482 |
| Cow position: | chr16:49257467-49257956 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 42 |
| Conread position: | 36-481 |
| Cow position: | chr16:51685530-51685095 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 296 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 278, 51 |
| Conread position: | 56-431 |
| Cow position: | chr16:14666721-14667091 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 224 |
| Conread position: | 57-431 |
| Cow position: | chr16:39818692-39818332 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 174 |
| Conread position: | 59-215 |
| Cow position: | chr16:5483260-5483414 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 70-292 |
| Cow position: | chr16:2239678-2239900 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 178, 10 |
| Conread position: | 70-432 |
| Cow position: | chr16:5589251-5588896 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 44, 5 |
| Conread position: | 72-427 |
| Cow position: | chr16:42051301-42051646 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 25 |
| Conread position: | 111-460 |
| Cow position: | chr16:51083583-51083234 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 24 |
| Conread position: | 134-484 |
| Cow position: | chr16:2412028-2412378 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 249 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 168, 64 |
| Conread position: | 160-430 |
| Cow position: | chr16:37446390-37446649 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 199, 88 |
| Conread position: | 203-474 |
| Cow position: | chr16:334911-334639 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 77, 24 |
| Conread position: | 204-485 |
| Cow position: | chr16:27735114-27735397 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 98, 77 |
| Conread position: | 210-462 |
| Cow position: | chr16:26661589-26661339 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 92, 71 |
| Conread position: | 214-431 |
| Cow position: | chr16:23982089-23981877 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 88, 67 |
| Conread position: | 218-480 |
| Cow position: | chr16:44673913-44673641 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 235-476 |
| Cow position: | chr16:34527640-34527392 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 46, 21 |
| Conread position: | 308-483 |
| Cow position: | chr16:15369102-15368926 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 54, 93 |
| Conread position: | 308-497 |
| Cow position: | chr16:2240227-2240422 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
Show alignments to all cow chromosomes.