Cow genome map
| Conread name: | Ova1-OVRM10105C05 |
| Conread position: | 1-228 |
| Cow position: | chr17:44853235-44853452 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-250 |
| Cow position: | chr17:15435491-15435244 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 10, 102 |
| Conread position: | 2-173 |
| Cow position: | chr17:2738076-2737905 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 37, 100 |
| Conread position: | 2-255 |
| Cow position: | chr17:16889823-16889574 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 37, 87 |
| Conread position: | 2-255 |
| Cow position: | chr17:35591913-35591669 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 38, 96 |
| Conread position: | 2-277 |
| Cow position: | chr17:25737361-25737086 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-292 |
| Cow position: | chr17:14893859-14893563 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 38, 49 |
| Conread position: | 2-325 |
| Cow position: | chr17:1383116-1383442 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 32 |
| Conread position: | 2-325 |
| Cow position: | chr17:8208805-8208479 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 32 |
| Conread position: | 2-325 |
| Cow position: | chr17:11783069-11782740 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 2-325 |
| Cow position: | chr17:14217326-14217656 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 2-325 |
| Cow position: | chr17:24633655-24633326 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 132 |
| Conread position: | 2-419 |
| Cow position: | chr17:2248883-2249299 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 299 |
| Conread position: | 2-427 |
| Cow position: | chr17:16859858-16860294 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 297 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 37, 246 |
| Conread position: | 2-431 |
| Cow position: | chr17:228603-229049 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 309 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 37, 121 |
| Conread position: | 2-431 |
| Cow position: | chr17:1284061-1284477 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 2-431 |
| Cow position: | chr17:2579257-2578838 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 36 |
| Conread position: | 2-431 |
| Cow position: | chr17:3643138-3643549 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 174 |
| Conread position: | 2-431 |
| Cow position: | chr17:11088026-11088457 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 32 |
| Conread position: | 2-431 |
| Cow position: | chr17:18103982-18104407 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 279 |
| Conread position: | 2-431 |
| Cow position: | chr17:22429784-22430181 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 96 |
| Conread position: | 2-431 |
| Cow position: | chr17:27345503-27345094 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 69 |
| Conread position: | 2-432 |
| Cow position: | chr17:6089463-6089880 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 288 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 37, 216 |
| Conread position: | 2-449 |
| Cow position: | chr17:13929366-13928935 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 126 |
| Conread position: | 2-460 |
| Cow position: | chr17:13857075-13857545 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 345 |
| Conread position: | 2-464 |
| Cow position: | chr17:4059806-4059343 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 341 |
| Conread position: | 2-464 |
| Cow position: | chr17:40804097-40803634 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 99 |
| Conread position: | 2-472 |
| Cow position: | chr17:152772-153226 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 318 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 184, 34 |
| Conread position: | 2-474 |
| Cow position: | chr17:14325796-14326245 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 197 |
| Conread position: | 2-475 |
| Cow position: | chr17:2261808-2261313 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 123 |
| Conread position: | 2-476 |
| Cow position: | chr17:20666028-20666529 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 2-483 |
| Cow position: | chr17:24780746-24780238 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 433 |
| Conread position: | 2-485 |
| Cow position: | chr17:15370775-15370310 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 66 |
| Conread position: | 3-240 |
| Cow position: | chr17:39933380-39933147 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 3-431 |
| Cow position: | chr17:32024497-32024899 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 228 |
| Conread position: | 3-472 |
| Cow position: | chr17:23857335-23857787 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 203 |
| Conread position: | 3-480 |
| Cow position: | chr17:6002315-6002781 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 323 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 36, 45 |
| Conread position: | 7-478 |
| Cow position: | chr17:2588027-2587546 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 316 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 10-390 |
| Cow position: | chr17:22131632-22131274 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 273 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 36, 227 |
| Conread position: | 11-474 |
| Cow position: | chr17:4081341-4080871 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 7 |
| Conread position: | 13-225 |
| Cow position: | chr17:28109773-28109570 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 26, 48 |
| Conread position: | 14-195 |
| Cow position: | chr17:20088069-20088251 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 51, 22 |
| Conread position: | 14-325 |
| Cow position: | chr17:22160602-22160285 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 15-240 |
| Cow position: | chr17:19609211-19609440 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 24, 92 |
| Conread position: | 15-431 |
| Cow position: | chr17:6259383-6258981 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 19 |
| Conread position: | 15-472 |
| Cow position: | chr17:2146900-2146450 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 313 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 7, 84 |
| Conread position: | 15-474 |
| Cow position: | chr17:20401367-20400916 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 316 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 23, 86 |
| Conread position: | 15-504 |
| Cow position: | chr17:15157274-15157783 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 353 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 24, 110 |
| Conread position: | 16-325 |
| Cow position: | chr17:9653768-9654080 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 18 |
| Conread position: | 22-473 |
| Cow position: | chr17:55004-55425 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 67 |
| Conread position: | 23-431 |
| Cow position: | chr17:15322505-15322110 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 336, 11 |
| Conread position: | 23-431 |
| Cow position: | chr17:19269685-19270073 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 166 |
| Conread position: | 23-481 |
| Cow position: | chr17:31200388-31200851 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 274 |
| Conread position: | 24-416 |
| Cow position: | chr17:2287053-2286677 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 212 |
| Conread position: | 25-325 |
| Cow position: | chr17:249596-249298 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 255, 48 |
| Conread position: | 26-286 |
| Cow position: | chr17:4295052-4294809 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 11, 104 |
| Conread position: | 26-483 |
| Cow position: | chr17:15143690-15144175 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 331 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 44, 105 |
| Conread position: | 38-480 |
| Cow position: | chr17:12670677-12671106 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 300 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 153, 84 |
| Conread position: | 47-477 |
| Cow position: | chr17:18302121-18302541 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 313, 90 |
| Conread position: | 51-472 |
| Cow position: | chr17:16900259-16900678 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 77, 46 |
| Conread position: | 52-325 |
| Cow position: | chr17:6119798-6119520 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 228, 0 |
| Conread position: | 59-483 |
| Cow position: | chr17:181257-180818 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 144, 157 |
| Conread position: | 79-432 |
| Cow position: | chr17:1945798-1945465 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 18 |
| Conread position: | 84-431 |
| Cow position: | chr17:18186612-18186924 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 97-305 |
| Cow position: | chr17:31768668-31768881 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 183, 0 |
| Conread position: | 155-483 |
| Cow position: | chr17:43988043-43987707 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 38 |
| Conread position: | 157-484 |
| Cow position: | chr17:1879088-1878753 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 203-487 |
| Cow position: | chr17:42264053-42263776 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 157, 74 |
| Conread position: | 215-431 |
| Cow position: | chr17:3694185-3694403 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 56, 42 |
| Conread position: | 223-432 |
| Cow position: | chr17:455368-455583 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 57, 12 |
| Conread position: | 244-474 |
| Cow position: | chr17:15417314-15417076 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 10, 58 |
| Conread position: | 245-431 |
| Cow position: | chr17:35591703-35591523 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 114, 29 |
| Conread position: | 308-482 |
| Cow position: | chr17:1775138-1775310 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 54, 71 |
| Conread position: | 310-431 |
| Cow position: | chr17:249077-248954 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 314-431 |
| Cow position: | chr17:44853506-44853624 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 59 |
Show alignments to all cow chromosomes.