Cow genome map
| Conread name: | Ova1-OVRM10105C05 |
| Conread position: | 2-199 |
| Cow position: | chr18:19539967-19540162 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 30, 147 |
| Conread position: | 2-214 |
| Cow position: | chr18:27986934-27986722 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-225 |
| Cow position: | chr18:40478289-40478067 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 37, 134 |
| Conread position: | 2-226 |
| Cow position: | chr18:17992656-17992880 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-227 |
| Cow position: | chr18:33268747-33268524 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 178 |
| Conread position: | 2-231 |
| Cow position: | chr18:2019780-2020005 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 124, 32 |
| Conread position: | 2-237 |
| Cow position: | chr18:22602393-22602157 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 38, 132 |
| Conread position: | 2-247 |
| Cow position: | chr18:51310492-51310247 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 24, 126 |
| Conread position: | 2-262 |
| Cow position: | chr18:51257889-51257630 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 228 |
| Conread position: | 2-325 |
| Cow position: | chr18:19352292-19351954 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 2-325 |
| Cow position: | chr18:33953661-33953993 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 7, 83 |
| Conread position: | 2-325 |
| Cow position: | chr18:44621665-44621335 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 37, 264 |
| Conread position: | 2-325 |
| Cow position: | chr18:47741924-47741595 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 2-335 |
| Cow position: | chr18:51660323-51659993 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 242 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 37, 123 |
| Conread position: | 2-428 |
| Cow position: | chr18:23797557-23797135 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 279 |
| Conread position: | 2-431 |
| Cow position: | chr18:23944465-23944869 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 234 |
| Conread position: | 2-431 |
| Cow position: | chr18:28973997-28974416 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 32 |
| Conread position: | 2-431 |
| Cow position: | chr18:32293681-32293272 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 126 |
| Conread position: | 2-431 |
| Cow position: | chr18:33358773-33358356 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 241 |
| Conread position: | 2-431 |
| Cow position: | chr18:35335395-35334978 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 225 |
| Conread position: | 2-431 |
| Cow position: | chr18:36508239-36507814 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 279 |
| Conread position: | 2-431 |
| Cow position: | chr18:43147018-43147431 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 235 |
| Conread position: | 2-431 |
| Cow position: | chr18:48221783-48221381 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 93 |
| Conread position: | 2-432 |
| Cow position: | chr18:16176700-16177133 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 279 |
| Conread position: | 2-432 |
| Cow position: | chr18:37585757-37586216 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 215 |
| Conread position: | 2-476 |
| Cow position: | chr18:25349945-25349473 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 226 |
| Conread position: | 2-476 |
| Cow position: | chr18:55089019-55089525 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 2-483 |
| Cow position: | chr18:11275194-11275687 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 91 |
| Conread position: | 2-483 |
| Cow position: | chr18:16078605-16078100 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 22 |
| Conread position: | 2-483 |
| Cow position: | chr18:54024453-54024941 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 27 |
| Conread position: | 2-484 |
| Cow position: | chr18:16660098-16660585 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 205 |
| Conread position: | 2-484 |
| Cow position: | chr18:41840919-41841405 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 279 |
| Conread position: | 3-160 |
| Cow position: | chr18:37599622-37599778 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 40, 136 |
| Conread position: | 3-245 |
| Cow position: | chr18:9186860-9187100 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 20, 32 |
| Conread position: | 3-283 |
| Cow position: | chr18:54171938-54172219 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 35, 127 |
| Conread position: | 3-466 |
| Cow position: | chr18:54002399-54001909 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 326 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 168, 340 |
| Conread position: | 3-479 |
| Cow position: | chr18:45958596-45958130 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 31 |
| Conread position: | 3-484 |
| Cow position: | chr18:37504969-37504490 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 33 |
| Conread position: | 11-264 |
| Cow position: | chr18:14415873-14415622 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 12-221 |
| Cow position: | chr18:32651893-32651682 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 12-432 |
| Cow position: | chr18:27838407-27838817 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 176 |
| Conread position: | 13-231 |
| Cow position: | chr18:1521024-1520804 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 173 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 25, 91 |
| Conread position: | 14-416 |
| Cow position: | chr18:51480731-51480336 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 345, 20 |
| Conread position: | 14-431 |
| Cow position: | chr18:14130188-14129776 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 169 |
| Conread position: | 14-476 |
| Cow position: | chr18:33335762-33335297 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 20 |
| Conread position: | 17-240 |
| Cow position: | chr18:47719674-47719902 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 17-431 |
| Cow position: | chr18:39748473-39748080 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 171 |
| Conread position: | 36-163 |
| Cow position: | chr18:51464600-51464727 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-163 |
| Cow position: | chr18:51610877-51610750 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 52-381 |
| Cow position: | chr18:42244700-42245014 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 42, 71 |
| Conread position: | 77-231 |
| Cow position: | chr18:53785315-53785156 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 53, 23 |
| Conread position: | 77-484 |
| Cow position: | chr18:29236609-29236192 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 352 |
| Conread position: | 93-325 |
| Cow position: | chr18:23746158-23746395 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 110, 123 |
| Conread position: | 113-431 |
| Cow position: | chr18:6869627-6869916 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 249, 90 |
| Conread position: | 137-480 |
| Cow position: | chr18:43200564-43200220 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 103 |
| Conread position: | 177-431 |
| Cow position: | chr18:30198412-30198154 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 24, 7 |
| Conread position: | 203-431 |
| Cow position: | chr18:27986624-27986401 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 99, 77 |
| Conread position: | 219-431 |
| Cow position: | chr18:32651639-32651433 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 143, 61 |
| Conread position: | 219-481 |
| Cow position: | chr18:40477833-40477573 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 83, 62 |
| Conread position: | 230-474 |
| Cow position: | chr18:51257702-51257443 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 248-487 |
| Cow position: | chr18:17993074-17993320 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 32, 103 |
| Conread position: | 279-431 |
| Cow position: | chr18:2020256-2020409 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 77, 96 |
| Conread position: | 279-484 |
| Cow position: | chr18:54172440-54172645 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 80, 165 |
| Conread position: | 293-432 |
| Cow position: | chr18:33268505-33268364 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 69, 0 |
Show alignments to all cow chromosomes.