Cow genome map
| Conread name: | Ova1-OVRM10105C05 |
| Conread position: | 1-227 |
| Cow position: | chr21:4076833-4076607 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 12, 34 |
| Conread position: | 1-448 |
| Cow position: | chr21:48116095-48115651 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 277 |
| Conread position: | 2-209 |
| Cow position: | chr21:30561788-30561580 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 2-228 |
| Cow position: | chr21:3426471-3426245 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 98, 22 |
| Conread position: | 2-236 |
| Cow position: | chr21:2789005-2789231 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 35, 68 |
| Conread position: | 2-238 |
| Cow position: | chr21:3615278-3615044 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 63 |
| Conread position: | 2-252 |
| Cow position: | chr21:4222701-4222958 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 171 |
| Conread position: | 2-277 |
| Cow position: | chr21:30599933-30600203 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 2-318 |
| Cow position: | chr21:2476524-2476843 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 37, 199 |
| Conread position: | 2-318 |
| Cow position: | chr21:37044899-37044586 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 37, 97 |
| Conread position: | 2-322 |
| Cow position: | chr21:39425049-39424729 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 37, 120 |
| Conread position: | 2-325 |
| Cow position: | chr21:4090637-4090306 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 37, 216 |
| Conread position: | 2-325 |
| Cow position: | chr21:11505573-11505245 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 23, 292 |
| Conread position: | 2-325 |
| Cow position: | chr21:17572907-17572587 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 278, 32 |
| Conread position: | 2-325 |
| Cow position: | chr21:26638477-26638799 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 37, 123 |
| Conread position: | 2-325 |
| Cow position: | chr21:27708748-27708419 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 36, 215 |
| Conread position: | 2-325 |
| Cow position: | chr21:28529558-28529885 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 118 |
| Conread position: | 2-431 |
| Cow position: | chr21:2716695-2717096 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 69 |
| Conread position: | 2-431 |
| Cow position: | chr21:35596354-35595951 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 75 |
| Conread position: | 2-474 |
| Cow position: | chr21:2416222-2415744 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 35 |
| Conread position: | 2-475 |
| Cow position: | chr21:2530140-2530597 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 104 |
| Conread position: | 2-481 |
| Cow position: | chr21:31559669-31560141 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 112 |
| Conread position: | 2-482 |
| Cow position: | chr21:40271834-40272306 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 32 |
| Conread position: | 2-483 |
| Cow position: | chr21:12056014-12056518 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 32 |
| Conread position: | 2-483 |
| Cow position: | chr21:47948095-47947590 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 333 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 37, 99 |
| Conread position: | 2-484 |
| Cow position: | chr21:145905-145428 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 278 |
| Conread position: | 2-484 |
| Cow position: | chr21:10850066-10849581 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 279 |
| Conread position: | 2-484 |
| Cow position: | chr21:33251378-33250896 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 279 |
| Conread position: | 3-278 |
| Cow position: | chr21:34054929-34055204 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 3-325 |
| Cow position: | chr21:2510637-2510314 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 277, 31 |
| Conread position: | 3-472 |
| Cow position: | chr21:20744765-20745212 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 310 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 11, 35 |
| Conread position: | 3-480 |
| Cow position: | chr21:359002-358530 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 119 |
| Conread position: | 3-487 |
| Cow position: | chr21:216294-215814 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 300 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 35, 58 |
| Conread position: | 4-225 |
| Cow position: | chr21:2674653-2674875 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 4-238 |
| Cow position: | chr21:6699571-6699816 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 6-225 |
| Cow position: | chr21:34292999-34292781 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 6-278 |
| Cow position: | chr21:23860765-23860491 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 33, 97 |
| Conread position: | 11-254 |
| Cow position: | chr21:13124018-13124260 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 12-431 |
| Cow position: | chr21:10566651-10566240 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 22 |
| Conread position: | 12-475 |
| Cow position: | chr21:5016052-5016546 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 94 |
| Conread position: | 12-478 |
| Cow position: | chr21:1191018-1190551 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 268 |
| Conread position: | 13-324 |
| Cow position: | chr21:11453681-11453994 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 187, 21 |
| Conread position: | 13-325 |
| Cow position: | chr21:46915562-46915249 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 26, 98 |
| Conread position: | 13-431 |
| Cow position: | chr21:3778743-3778335 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 172 |
| Conread position: | 13-504 |
| Cow position: | chr21:4183510-4183016 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 23 |
| Conread position: | 14-431 |
| Cow position: | chr21:2883762-2884175 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 15 |
| Conread position: | 15-460 |
| Cow position: | chr21:1292200-1292653 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 11 |
| Conread position: | 16-325 |
| Cow position: | chr21:26819045-26819356 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 18 |
| Conread position: | 16-425 |
| Cow position: | chr21:2501910-2501503 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 266 |
| Conread position: | 16-483 |
| Cow position: | chr21:47939452-47938995 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 221 |
| Conread position: | 17-324 |
| Cow position: | chr21:4083621-4083325 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 22, 94 |
| Conread position: | 19-430 |
| Cow position: | chr21:34259245-34259640 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 17 |
| Conread position: | 24-230 |
| Cow position: | chr21:9891575-9891370 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 161 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 15, 128 |
| Conread position: | 26-460 |
| Cow position: | chr21:2769500-2769930 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 75 |
| Conread position: | 30-482 |
| Cow position: | chr21:18692717-18692279 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 8, 114 |
| Conread position: | 31-466 |
| Cow position: | chr21:7267579-7268014 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 149 |
| Conread position: | 52-469 |
| Cow position: | chr21:4590031-4590450 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 66 |
| Conread position: | 71-318 |
| Cow position: | chr21:39580638-39580386 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 132, 145 |
| Conread position: | 81-245 |
| Cow position: | chr21:23811816-23811655 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 85-325 |
| Cow position: | chr21:19610018-19609773 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 195, 0 |
| Conread position: | 97-428 |
| Cow position: | chr21:41953073-41952742 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 161 |
| Conread position: | 102-432 |
| Cow position: | chr21:29086378-29086070 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 134 |
| Conread position: | 106-325 |
| Cow position: | chr21:2454599-2454376 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 174, 19 |
| Conread position: | 115-475 |
| Cow position: | chr21:2541998-2542365 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 119 |
| Conread position: | 116-472 |
| Cow position: | chr21:35089574-35089211 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 137, 148 |
| Conread position: | 204-475 |
| Cow position: | chr21:4455874-4455607 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 111, 36 |
| Conread position: | 206-464 |
| Cow position: | chr21:30561050-30560793 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 96, 75 |
| Conread position: | 279-431 |
| Cow position: | chr21:34292523-34292373 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 80, 122 |
| Conread position: | 283-484 |
| Cow position: | chr21:23809480-23809273 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 284-474 |
| Cow position: | chr21:18820394-18820590 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 293-472 |
| Cow position: | chr21:25286312-25286130 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 21, 108 |
| Conread position: | 308-483 |
| Cow position: | chr21:2454372-2454192 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
Show alignments to all cow chromosomes.