Cow genome map
| Conread name: | Ova1-OVRM10105C05 |
| Conread position: | 1-277 |
| Cow position: | chr22:46635882-46636160 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 207 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 11, 90 |
| Conread position: | 1-322 |
| Cow position: | chr22:11030775-11030477 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 95 |
| Conread position: | 1-431 |
| Cow position: | chr22:36736577-36736169 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 23 |
| Conread position: | 2-186 |
| Cow position: | chr22:4065454-4065269 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 2-230 |
| Cow position: | chr22:36861717-36861946 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 2-251 |
| Cow position: | chr22:118004-118253 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 21 |
| Conread position: | 2-276 |
| Cow position: | chr22:44395594-44395321 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 53 |
| Conread position: | 2-318 |
| Cow position: | chr22:3278540-3278858 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 223 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 37, 128 |
| Conread position: | 2-325 |
| Cow position: | chr22:6985068-6984739 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 215 |
| Conread position: | 2-325 |
| Cow position: | chr22:10910044-10910370 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 233 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 246, 32 |
| Conread position: | 2-325 |
| Cow position: | chr22:18475952-18476276 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 278, 32 |
| Conread position: | 2-325 |
| Cow position: | chr22:24949643-24949314 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 257 |
| Conread position: | 2-325 |
| Cow position: | chr22:27309960-27310292 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 2-325 |
| Cow position: | chr22:35672542-35672871 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 215 |
| Conread position: | 2-348 |
| Cow position: | chr22:6503857-6504186 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 96 |
| Conread position: | 2-388 |
| Cow position: | chr22:37131463-37131088 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 39 |
| Conread position: | 2-397 |
| Cow position: | chr22:1270685-1271087 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 171 |
| Conread position: | 2-430 |
| Cow position: | chr22:5672550-5672151 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 37 |
| Conread position: | 2-431 |
| Cow position: | chr22:1293683-1294112 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 69 |
| Conread position: | 2-431 |
| Cow position: | chr22:17328926-17329348 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 198 |
| Conread position: | 2-431 |
| Cow position: | chr22:19143886-19144309 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 69 |
| Conread position: | 2-431 |
| Cow position: | chr22:21589146-21588727 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 247 |
| Conread position: | 2-431 |
| Cow position: | chr22:36534150-36534567 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 235 |
| Conread position: | 2-431 |
| Cow position: | chr22:39882362-39882770 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 55 |
| Conread position: | 2-475 |
| Cow position: | chr22:1285118-1285595 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 218 |
| Conread position: | 2-475 |
| Cow position: | chr22:3306919-3307380 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 21 |
| Conread position: | 2-476 |
| Cow position: | chr22:5307931-5307423 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 2-481 |
| Cow position: | chr22:34168145-34167656 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 310 |
| Conread position: | 2-481 |
| Cow position: | chr22:42990985-42990514 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 246 |
| Conread position: | 2-482 |
| Cow position: | chr22:44489700-44489198 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 32 |
| Conread position: | 2-483 |
| Cow position: | chr22:693445-692942 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 338 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 39, 84 |
| Conread position: | 2-483 |
| Cow position: | chr22:1878604-1878137 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 12 |
| Conread position: | 2-483 |
| Cow position: | chr22:8136383-8136860 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 93 |
| Conread position: | 2-483 |
| Cow position: | chr22:44369807-44370314 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 32 |
| Conread position: | 2-484 |
| Cow position: | chr22:1321425-1320949 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 22 |
| Conread position: | 3-307 |
| Cow position: | chr22:41237384-41237068 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 41, 20 |
| Conread position: | 3-472 |
| Cow position: | chr22:7277335-7276867 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 254 |
| Conread position: | 3-480 |
| Cow position: | chr22:1047189-1046723 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 311 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 52, 8 |
| Conread position: | 3-481 |
| Cow position: | chr22:309526-309071 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 321 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 90, 21 |
| Conread position: | 3-505 |
| Cow position: | chr22:327339-327865 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 21 |
| Conread position: | 6-228 |
| Cow position: | chr22:10076942-10077160 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 118, 30 |
| Conread position: | 10-325 |
| Cow position: | chr22:37265259-37264938 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 227 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 30, 14 |
| Conread position: | 11-246 |
| Cow position: | chr22:1319200-1318963 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 11-269 |
| Cow position: | chr22:44353143-44353402 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 12-225 |
| Cow position: | chr22:18816578-18816792 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 10, 68 |
| Conread position: | 12-278 |
| Cow position: | chr22:31335229-31335494 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 242 |
| Conread position: | 12-318 |
| Cow position: | chr22:5233502-5233805 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 222 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 268, 12 |
| Conread position: | 12-431 |
| Cow position: | chr22:560896-561310 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 199 |
| Conread position: | 12-431 |
| Cow position: | chr22:39469715-39470128 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 206 |
| Conread position: | 12-431 |
| Cow position: | chr22:42771353-42770957 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 220 |
| Conread position: | 12-431 |
| Cow position: | chr22:44933783-44933368 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 269 |
| Conread position: | 13-211 |
| Cow position: | chr22:158108-158311 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 13-227 |
| Cow position: | chr22:41474537-41474742 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 27, 90 |
| Conread position: | 13-324 |
| Cow position: | chr22:16200295-16199980 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 26, 48 |
| Conread position: | 14-431 |
| Cow position: | chr22:44457113-44456701 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 12 |
| Conread position: | 14-476 |
| Cow position: | chr22:32348168-32348609 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 35 |
| Conread position: | 15-428 |
| Cow position: | chr22:45880334-45880724 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 82 |
| Conread position: | 17-205 |
| Cow position: | chr22:32485534-32485718 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 22, 106 |
| Conread position: | 17-264 |
| Cow position: | chr22:41419886-41420133 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 107, 244 |
| Conread position: | 17-355 |
| Cow position: | chr22:37067112-37067429 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 22, 80 |
| Conread position: | 17-433 |
| Cow position: | chr22:15851137-15850718 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 44 |
| Conread position: | 19-428 |
| Cow position: | chr22:13772586-13772174 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 92 |
| Conread position: | 20-246 |
| Cow position: | chr22:46853142-46852911 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 69, 28 |
| Conread position: | 22-431 |
| Cow position: | chr22:526116-526521 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 85 |
| Conread position: | 24-466 |
| Cow position: | chr22:5933191-5933650 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 10 |
| Conread position: | 26-325 |
| Cow position: | chr22:10546439-10546135 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 177, 190 |
| Conread position: | 27-431 |
| Cow position: | chr22:31313133-31312733 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 254 |
| Conread position: | 36-449 |
| Cow position: | chr22:37073389-37073790 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 86 |
| Conread position: | 56-355 |
| Cow position: | chr22:12732313-12732601 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 173, 15 |
| Conread position: | 72-249 |
| Cow position: | chr22:18930320-18930143 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 128, 144 |
| Conread position: | 80-464 |
| Cow position: | chr22:36180879-36180483 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 63 |
| Conread position: | 82-431 |
| Cow position: | chr22:40380931-40380606 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 254 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 28, 40 |
| Conread position: | 111-532 |
| Cow position: | chr22:44609343-44608921 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 160, 143 |
| Conread position: | 137-431 |
| Cow position: | chr22:27386709-27387002 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 143, 175 |
| Conread position: | 151-348 |
| Cow position: | chr22:15314693-15314883 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 151, 129 |
| Conread position: | 159-382 |
| Cow position: | chr22:48004323-48004096 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 45, 218 |
| Conread position: | 202-466 |
| Cow position: | chr22:36862098-36862361 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 160, 79 |
| Conread position: | 219-431 |
| Cow position: | chr22:18817083-18817296 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 83, 53 |
| Conread position: | 229-473 |
| Cow position: | chr22:6332299-6332056 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 73, 52 |
| Conread position: | 235-431 |
| Cow position: | chr22:1319017-1318817 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 27, 177 |
| Conread position: | 261-472 |
| Cow position: | chr22:36273061-36272854 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 98, 16 |
| Conread position: | 279-426 |
| Cow position: | chr22:10077178-10077327 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 60, 81 |
| Conread position: | 279-466 |
| Cow position: | chr22:46636446-46636639 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 309-472 |
| Cow position: | chr22:44353634-44353803 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 53, 0 |
Show alignments to all cow chromosomes.