Cow genome map

Conread name: Ova1-OVRM10105C05

Conread position: 1-226
Cow position: chr28:17330663-17330899 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 38, 19

Conread position: 1-431
Cow position: chr28:10582126-10582548 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 247

Conread position: 1-431
Cow position: chr28:34593702-34593278 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 282

Conread position: 1-483
Cow position: chr28:21325649-21325161 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 167

Conread position: 2-156
Cow position: chr28:4380961-4381106 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 127
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 37, 21

Conread position: 2-195
Cow position: chr28:24587291-24587100 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 37, 122

Conread position: 2-209
Cow position: chr28:7822115-7821915 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 20, 108

Conread position: 2-215
Cow position: chr28:1815010-1815223 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 164
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 2-238
Cow position: chr28:9953994-9953756 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 178
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 24, 0

Conread position: 2-325
Cow position: chr28:1952988-1952672 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 228
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 246, 32

Conread position: 2-325
Cow position: chr28:13441019-13441348 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 2-325
Cow position: chr28:15950839-15950510 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 215

Conread position: 2-431
Cow position: chr28:7001846-7001436 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 187

Conread position: 2-431
Cow position: chr28:17388339-17387914 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 279

Conread position: 2-431
Cow position: chr28:22261293-22261714 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 279

Conread position: 2-431
Cow position: chr28:29819428-29819007 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 247

Conread position: 2-431
Cow position: chr28:32792521-32792940 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 279

Conread position: 2-435
Cow position: chr28:14750406-14749969 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 317

Conread position: 2-462
Cow position: chr28:17667654-17668114 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 279

Conread position: 2-474
Cow position: chr28:14705814-14706282 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 278

Conread position: 2-475
Cow position: chr28:1387537-1388005 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 17

Conread position: 2-476
Cow position: chr28:10619249-10619724 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 21

Conread position: 2-484
Cow position: chr28:3192933-3193399 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 85

Conread position: 2-484
Cow position: chr28:5565719-5565234 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 279

Conread position: 2-484
Cow position: chr28:5812566-5812082 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 27

Conread position: 2-485
Cow position: chr28:8721587-8722086 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 32

Conread position: 3-431
Cow position: chr28:2591775-2591377 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 36

Conread position: 3-431
Cow position: chr28:13522586-13522171 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 248

Conread position: 3-472
Cow position: chr28:22827909-22827446 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 17

Conread position: 3-473
Cow position: chr28:8378423-8377950 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 33

Conread position: 3-476
Cow position: chr28:18089147-18089618 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 306
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 91, 42

Conread position: 3-481
Cow position: chr28:21358873-21358394 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 3-497
Cow position: chr28:5796674-5796181 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 28

Conread position: 5-252
Cow position: chr28:580765-581003 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 167
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 32

Conread position: 10-294
Cow position: chr28:15920616-15920899 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 205
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 27, 115

Conread position: 11-431
Cow position: chr28:782247-781830 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 271

Conread position: 11-431
Cow position: chr28:1168315-1168731 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 270

Conread position: 11-431
Cow position: chr28:18520612-18521033 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 270

Conread position: 12-304
Cow position: chr28:9155437-9155712 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 219
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 27, 58

Conread position: 12-325
Cow position: chr28:6780481-6780798 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 225
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 27, 64

Conread position: 12-431
Cow position: chr28:2083452-2083037 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 269

Conread position: 12-431
Cow position: chr28:13459819-13459407 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 126

Conread position: 12-484
Cow position: chr28:26426426-26426884 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 32

Conread position: 13-228
Cow position: chr28:7901198-7900991 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 161
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 21, 0

Conread position: 15-478
Cow position: chr28:15585235-15584785 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 305
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 235, 10

Conread position: 16-431
Cow position: chr28:26007877-26007469 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 40

Conread position: 16-459
Cow position: chr28:12150163-12149730 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 18

Conread position: 16-511
Cow position: chr28:34648780-34648302 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 75

Conread position: 17-184
Cow position: chr28:14491306-14491140 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 22, 111

Conread position: 17-475
Cow position: chr28:15681736-15681299 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 219

Conread position: 17-481
Cow position: chr28:6657501-6657957 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 287
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 343, 84

Conread position: 28-431
Cow position: chr28:5115248-5115639 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 161

Conread position: 35-520
Cow position: chr28:7817055-7816586 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 35

Conread position: 55-484
Cow position: chr28:7790435-7790858 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 88

Conread position: 63-325
Cow position: chr28:489286-489019 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 196
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 217, 254

Conread position: 74-431
Cow position: chr28:33252129-33251752 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 0

Conread position: 77-225
Cow position: chr28:9137246-9137394 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 77-431
Cow position: chr28:5752378-5752727 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 204

Conread position: 77-467
Cow position: chr28:7740037-7739650 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 204

Conread position: 77-476
Cow position: chr28:2990184-2990586 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 41

Conread position: 82-431
Cow position: chr28:1504418-1504074 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 196

Conread position: 83-431
Cow position: chr28:15035640-15035983 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 197

Conread position: 87-476
Cow position: chr28:10464077-10464459 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 255
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 273, 15

Conread position: 89-431
Cow position: chr28:15378244-15378581 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 191

Conread position: 93-485
Cow position: chr28:24667380-24666984 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 185

Conread position: 117-431
Cow position: chr28:5936762-5936455 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 211
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 185, 91

Conread position: 139-484
Cow position: chr28:28973506-28973843 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 241
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 163, 92

Conread position: 242-476
Cow position: chr28:13721588-13721345 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 166
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 18, 39

Conread position: 245-430
Cow position: chr28:5245170-5244990 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 114, 36

Conread position: 314-431
Cow position: chr28:9953716-9953597 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 48, 0

Show alignments to all cow chromosomes.