Cow genome map
| Conread name: | Ova1-OVRM10105C05 |
| Conread position: | 1-246 |
| Cow position: | chr4:17926705-17926953 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 1-431 |
| Cow position: | chr4:13492123-13491694 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 283 |
| Conread position: | 1-431 |
| Cow position: | chr4:29532167-29532593 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 280 |
| Conread position: | 1-431 |
| Cow position: | chr4:43320089-43320515 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 280 |
| Conread position: | 1-431 |
| Cow position: | chr4:46712794-46713211 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 148 |
| Conread position: | 1-432 |
| Cow position: | chr4:158063-157617 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 317 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 38, 92 |
| Conread position: | 1-483 |
| Cow position: | chr4:21338440-21338922 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 2-169 |
| Cow position: | chr4:32211713-32211544 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 2-249 |
| Cow position: | chr4:54190401-54190174 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 192 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 2-261 |
| Cow position: | chr4:12241673-12241934 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 2-325 |
| Cow position: | chr4:602540-602214 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 278, 32 |
| Conread position: | 2-325 |
| Cow position: | chr4:1931074-1931403 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 2-325 |
| Cow position: | chr4:3125327-3124998 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 2-325 |
| Cow position: | chr4:9311783-9311455 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 37, 215 |
| Conread position: | 2-325 |
| Cow position: | chr4:13547574-13547241 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 37, 320 |
| Conread position: | 2-325 |
| Cow position: | chr4:23114630-23114958 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 226 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 37, 215 |
| Conread position: | 2-325 |
| Cow position: | chr4:65223988-65224317 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 215 |
| Conread position: | 2-326 |
| Cow position: | chr4:16056150-16055810 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 100, 32 |
| Conread position: | 2-431 |
| Cow position: | chr4:18516442-18516010 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 310 |
| Conread position: | 2-431 |
| Cow position: | chr4:33493358-33492932 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 280 |
| Conread position: | 2-431 |
| Cow position: | chr4:43880655-43880232 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 103 |
| Conread position: | 2-431 |
| Cow position: | chr4:45049753-45050174 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 22 |
| Conread position: | 2-432 |
| Cow position: | chr4:6490800-6491225 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 279 |
| Conread position: | 2-432 |
| Cow position: | chr4:36895920-36895494 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 279 |
| Conread position: | 2-432 |
| Cow position: | chr4:47764624-47765083 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 334 |
| Conread position: | 2-458 |
| Cow position: | chr4:25600066-25600510 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 84 |
| Conread position: | 2-460 |
| Cow position: | chr4:3961138-3960684 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 18 |
| Conread position: | 2-462 |
| Cow position: | chr4:355457-355001 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 32 |
| Conread position: | 2-462 |
| Cow position: | chr4:4905700-4905240 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 182 |
| Conread position: | 2-462 |
| Cow position: | chr4:48025948-48025491 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 246 |
| Conread position: | 2-466 |
| Cow position: | chr4:34185317-34185773 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 20 |
| Conread position: | 2-466 |
| Cow position: | chr4:44724629-44724171 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 271 |
| Conread position: | 2-479 |
| Cow position: | chr4:1371468-1371915 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 24 |
| Conread position: | 2-481 |
| Cow position: | chr4:528539-528035 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 332 |
| Conread position: | 2-483 |
| Cow position: | chr4:6269082-6269588 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 343 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 37, 123 |
| Conread position: | 2-483 |
| Cow position: | chr4:30307908-30308401 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 120, 99 |
| Conread position: | 3-116 |
| Cow position: | chr4:66179441-66179554 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 94 |
| Conread position: | 3-389 |
| Cow position: | chr4:1464381-1464760 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 276, 21 |
| Conread position: | 3-426 |
| Cow position: | chr4:31668860-31668454 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 117 |
| Conread position: | 3-460 |
| Cow position: | chr4:8598593-8599033 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 301 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 125, 37 |
| Conread position: | 3-477 |
| Cow position: | chr4:60630707-60631164 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 35, 20 |
| Conread position: | 3-477 |
| Cow position: | chr4:60673446-60672979 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 325 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 35, 20 |
| Conread position: | 3-483 |
| Cow position: | chr4:28830585-28830112 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 80 |
| Conread position: | 3-497 |
| Cow position: | chr4:46663749-46663249 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 182 |
| Conread position: | 9-431 |
| Cow position: | chr4:66925543-66925137 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 54 |
| Conread position: | 10-431 |
| Cow position: | chr4:33073845-33074259 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 285 |
| Conread position: | 11-431 |
| Cow position: | chr4:16359424-16359027 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 11 |
| Conread position: | 11-484 |
| Cow position: | chr4:41330977-41330501 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 270 |
| Conread position: | 12-335 |
| Cow position: | chr4:101393-101722 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 201 |
| Conread position: | 13-431 |
| Cow position: | chr4:1050089-1050502 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 11 |
| Conread position: | 13-431 |
| Cow position: | chr4:24445664-24446075 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 15-478 |
| Cow position: | chr4:41428156-41427691 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 29, 84 |
| Conread position: | 16-466 |
| Cow position: | chr4:21359181-21358751 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 307 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 340, 24 |
| Conread position: | 17-325 |
| Cow position: | chr4:5879706-5879403 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 230, 17 |
| Conread position: | 18-238 |
| Cow position: | chr4:11617974-11617747 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 23-464 |
| Cow position: | chr4:58883151-58883582 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 283 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 20, 13 |
| Conread position: | 31-325 |
| Cow position: | chr4:41954311-41954012 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 7, 108 |
| Conread position: | 36-431 |
| Cow position: | chr4:3358236-3357850 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 245 |
| Conread position: | 36-431 |
| Cow position: | chr4:57978928-57978544 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 236 |
| Conread position: | 36-432 |
| Cow position: | chr4:41118640-41118247 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 246 |
| Conread position: | 45-297 |
| Cow position: | chr4:3829994-3829749 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 34, 47 |
| Conread position: | 46-229 |
| Cow position: | chr4:60265290-60265467 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 67-246 |
| Cow position: | chr4:47718114-47718289 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 88-474 |
| Cow position: | chr4:54955432-54955031 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 339 |
| Conread position: | 106-384 |
| Cow position: | chr4:10408181-10407929 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 253, 127 |
| Conread position: | 198-432 |
| Cow position: | chr4:24652157-24652396 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 45, 33 |
| Conread position: | 274-430 |
| Cow position: | chr4:4168762-4168607 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 5 |
Show alignments to all cow chromosomes.