Cow genome map

Conread name: Ova1-OVRM10105C05

Conread position: 1-431
Cow position: chr6:27530218-27530637 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 33

Conread position: 1-431
Cow position: chr6:55544543-55544969 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 280

Conread position: 1-473
Cow position: chr6:27469039-27468583 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 33

Conread position: 2-119
Cow position: chr6:37115921-37115803 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 26, 106

Conread position: 2-228
Cow position: chr6:59919496-59919718 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 172
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 38, 97

Conread position: 2-241
Cow position: chr6:13943694-13943456 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 177
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 119, 32

Conread position: 2-241
Cow position: chr6:58409127-58409365 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 37, 128

Conread position: 2-246
Cow position: chr6:701736-701490 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 2-279
Cow position: chr6:6566395-6566117 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 2-296
Cow position: chr6:65909209-65908916 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 214
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 35, 99

Conread position: 2-305
Cow position: chr6:34127134-34126825 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 2-318
Cow position: chr6:40275041-40274718 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 131

Conread position: 2-318
Cow position: chr6:68026564-68026242 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 22

Conread position: 2-325
Cow position: chr6:2554490-2554165 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 230
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 37, 238

Conread position: 2-325
Cow position: chr6:6935342-6935671 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 229
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 38, 215

Conread position: 2-325
Cow position: chr6:13103840-13103513 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 12

Conread position: 2-325
Cow position: chr6:17598497-17598827 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 232
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 124, 32

Conread position: 2-325
Cow position: chr6:26671081-26671411 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 234
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 208, 32

Conread position: 2-325
Cow position: chr6:27169359-27169030 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 215

Conread position: 2-325
Cow position: chr6:28491731-28492057 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 227
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 37, 215

Conread position: 2-325
Cow position: chr6:39907932-39907610 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 230
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 37, 123

Conread position: 2-325
Cow position: chr6:41757203-41757530 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 228
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 38, 215

Conread position: 2-325
Cow position: chr6:43617499-43617169 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 169

Conread position: 2-325
Cow position: chr6:45672047-45671723 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 226
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 38, 101

Conread position: 2-325
Cow position: chr6:57870221-57870550 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 257

Conread position: 2-424
Cow position: chr6:33388616-33388209 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 301
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 104, 22

Conread position: 2-431
Cow position: chr6:8201515-8201090 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 279

Conread position: 2-431
Cow position: chr6:15141393-15141812 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 232

Conread position: 2-431
Cow position: chr6:15280759-15281185 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 280

Conread position: 2-431
Cow position: chr6:20561327-20561742 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 44

Conread position: 2-431
Cow position: chr6:28274766-28274350 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 23

Conread position: 2-431
Cow position: chr6:36525825-36525403 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 198

Conread position: 2-431
Cow position: chr6:39437423-39436996 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 32

Conread position: 2-431
Cow position: chr6:50497676-50498091 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 62

Conread position: 2-432
Cow position: chr6:13978305-13977868 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 293
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 37, 169

Conread position: 2-432
Cow position: chr6:24238830-24238408 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 246

Conread position: 2-458
Cow position: chr6:65880649-65880187 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 54

Conread position: 2-460
Cow position: chr6:30478874-30478410 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 27

Conread position: 2-462
Cow position: chr6:5951454-5951913 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 134

Conread position: 2-462
Cow position: chr6:64713331-64712877 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 183

Conread position: 2-462
Cow position: chr6:64714898-64714444 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 183

Conread position: 2-470
Cow position: chr6:21686675-21686216 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 30

Conread position: 2-472
Cow position: chr6:19453705-19453255 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 22

Conread position: 2-474
Cow position: chr6:10054397-10053952 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 162

Conread position: 2-476
Cow position: chr6:44150775-44151266 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 114

Conread position: 2-481
Cow position: chr6:1823467-1823937 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 32

Conread position: 2-481
Cow position: chr6:3278168-3278646 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 186

Conread position: 2-481
Cow position: chr6:34893227-34893702 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 178

Conread position: 2-483
Cow position: chr6:1405454-1405958 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 134

Conread position: 2-483
Cow position: chr6:11277918-11278391 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 21

Conread position: 2-484
Cow position: chr6:6476671-6477147 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 89

Conread position: 2-484
Cow position: chr6:38232058-38231567 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 97

Conread position: 2-506
Cow position: chr6:12093080-12093575 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 27

Conread position: 3-278
Cow position: chr6:52804197-52803927 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 187
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 37, 89

Conread position: 3-280
Cow position: chr6:1384062-1384338 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 187
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 20, 119

Conread position: 3-480
Cow position: chr6:7179897-7180356 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 21

Conread position: 4-465
Cow position: chr6:35876936-35877396 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 183

Conread position: 9-246
Cow position: chr6:68362544-68362777 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 176
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 15, 0

Conread position: 9-432
Cow position: chr6:42927160-42926761 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 298
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 29, 14

Conread position: 10-459
Cow position: chr6:33459361-33458898 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 95

Conread position: 10-483
Cow position: chr6:28063112-28062621 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 329
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 114, 14

Conread position: 11-224
Cow position: chr6:8761527-8761741 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 28, 0

Conread position: 11-246
Cow position: chr6:65927710-65927483 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 162
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 26, 0

Conread position: 11-325
Cow position: chr6:40314676-40314371 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 223
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 32, 119

Conread position: 11-432
Cow position: chr6:21971447-21971035 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 165

Conread position: 11-484
Cow position: chr6:3488627-3489094 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 75

Conread position: 12-274
Cow position: chr6:42723152-42723403 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 190
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 24, 0

Conread position: 12-277
Cow position: chr6:17045834-17045570 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 17

Conread position: 12-325
Cow position: chr6:331693-332025 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 230
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 27, 0

Conread position: 12-407
Cow position: chr6:47043659-47044042 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 150

Conread position: 12-431
Cow position: chr6:51745-52154 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 12

Conread position: 12-431
Cow position: chr6:913401-912989 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 22

Conread position: 12-432
Cow position: chr6:65822354-65822773 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 210

Conread position: 13-325
Cow position: chr6:2374478-2374164 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 225
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 26, 80

Conread position: 13-325
Cow position: chr6:7141700-7142011 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 224
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 26, 107

Conread position: 13-431
Cow position: chr6:65841366-65840946 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 273

Conread position: 13-483
Cow position: chr6:44028819-44028326 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 21

Conread position: 14-431
Cow position: chr6:10558875-10559256 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 289
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 25, 49

Conread position: 14-459
Cow position: chr6:30275412-30275844 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 162

Conread position: 15-464
Cow position: chr6:2402020-2401588 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 301
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 184, 95

Conread position: 18-431
Cow position: chr6:65007610-65007226 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 183

Conread position: 24-277
Cow position: chr6:29311255-29311001 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 0

Conread position: 24-480
Cow position: chr6:66194218-66194667 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 292
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 335, 32

Conread position: 24-505
Cow position: chr6:66231574-66231100 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 91

Conread position: 26-474
Cow position: chr6:65900151-65900604 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 175

Conread position: 36-279
Cow position: chr6:28106020-28106256 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 180
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 5, 0

Conread position: 36-395
Cow position: chr6:52736149-52735789 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 99

Conread position: 36-476
Cow position: chr6:13846782-13846344 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 192
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 326, 214

Conread position: 42-325
Cow position: chr6:21836358-21836658 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 215
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 73, 104

Conread position: 42-431
Cow position: chr6:3889747-3890129 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 54

Conread position: 73-431
Cow position: chr6:2111246-2111595 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 174

Conread position: 77-228
Cow position: chr6:13276267-13276115 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 120
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 47, 0

Conread position: 77-443
Cow position: chr6:13317980-13318337 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 112

Conread position: 92-246
Cow position: chr6:10640482-10640330 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 142, 45

Conread position: 106-431
Cow position: chr6:40554932-40555252 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 233
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 19, 33

Conread position: 114-431
Cow position: chr6:37477911-37477591 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 224
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 155, 87

Conread position: 140-431
Cow position: chr6:62489067-62489359 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 202
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 150, 78

Conread position: 140-498
Cow position: chr6:66538970-66538622 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 240
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 220, 77

Conread position: 144-473
Cow position: chr6:476734-476408 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 228
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 158, 136

Conread position: 197-431
Cow position: chr6:62829312-62829539 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 170
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 162, 83

Conread position: 219-431
Cow position: chr6:8761889-8762093 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 143, 23

Conread position: 308-432
Cow position: chr6:13943349-13943223 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 308-479
Cow position: chr6:332029-332205 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 308-499
Cow position: chr6:65927162-65926968 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 54, 174

Show alignments to all cow chromosomes.