Cow genome map

Conread name: Ova1-OVRM10105C05

Conread position: 1-252
Cow position: chr9:37129824-37130078 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 182
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 72, 22

Conread position: 1-407
Cow position: chr9:3586015-3585635 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 106

Conread position: 1-421
Cow position: chr9:3867789-3868206 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 282
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 17, 103

Conread position: 1-431
Cow position: chr9:2170770-2170345 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 25

Conread position: 1-431
Cow position: chr9:30672083-30671658 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 252

Conread position: 1-431
Cow position: chr9:59482957-59483377 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 31

Conread position: 1-462
Cow position: chr9:417818-418276 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 280

Conread position: 1-464
Cow position: chr9:59174443-59174908 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 281

Conread position: 1-473
Cow position: chr9:7002267-7001797 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 280

Conread position: 2-208
Cow position: chr9:29028517-29028724 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 35, 0

Conread position: 2-209
Cow position: chr9:32968453-32968244 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 37, 22

Conread position: 2-230
Cow position: chr9:3567141-3567370 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 36, 0

Conread position: 2-233
Cow position: chr9:131483-131722 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 171
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 36, 22

Conread position: 2-239
Cow position: chr9:28677686-28677449 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 37, 124

Conread position: 2-239
Cow position: chr9:36724213-36723977 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 37, 120

Conread position: 2-246
Cow position: chr9:1979655-1979415 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 183
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 32, 0

Conread position: 2-277
Cow position: chr9:60278310-60278587 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 2-318
Cow position: chr9:1076487-1076807 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 224
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 37, 130

Conread position: 2-318
Cow position: chr9:12401956-12401637 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 228
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 37, 128

Conread position: 2-318
Cow position: chr9:16268072-16267751 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 188

Conread position: 2-318
Cow position: chr9:50789278-50788960 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 228
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 37, 120

Conread position: 2-325
Cow position: chr9:163778-164107 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 129

Conread position: 2-325
Cow position: chr9:4672319-4671992 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 264

Conread position: 2-325
Cow position: chr9:27933806-27933477 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 2-325
Cow position: chr9:31194455-31194784 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 2-325
Cow position: chr9:34242886-34243215 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 2-431
Cow position: chr9:222837-223268 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 298
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 208, 32

Conread position: 2-431
Cow position: chr9:2199819-2199403 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 34

Conread position: 2-431
Cow position: chr9:15072228-15071821 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 235

Conread position: 2-431
Cow position: chr9:16175479-16175055 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 0

Conread position: 2-431
Cow position: chr9:28626319-28626716 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 15

Conread position: 2-431
Cow position: chr9:29629035-29629460 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 279

Conread position: 2-431
Cow position: chr9:51182999-51183421 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 32

Conread position: 2-431
Cow position: chr9:54360315-54359893 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 22

Conread position: 2-431
Cow position: chr9:59455887-59456311 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 279

Conread position: 2-432
Cow position: chr9:1252255-1252692 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 294
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 38, 317

Conread position: 2-460
Cow position: chr9:5003725-5003267 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 138

Conread position: 2-470
Cow position: chr9:59535810-59535348 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 53

Conread position: 2-476
Cow position: chr9:2488259-2488754 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 121

Conread position: 2-483
Cow position: chr9:17064686-17065188 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 335
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 27, 59

Conread position: 2-483
Cow position: chr9:45873061-45872553 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 345
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 165, 32

Conread position: 2-483
Cow position: chr9:46626087-46626599 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 332

Conread position: 2-484
Cow position: chr9:9012822-9012337 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 271

Conread position: 2-484
Cow position: chr9:18510012-18510495 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 279

Conread position: 2-484
Cow position: chr9:59443564-59443058 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 32

Conread position: 3-231
Cow position: chr9:3155745-3155526 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 7, 89

Conread position: 3-235
Cow position: chr9:792800-793026 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 35

Conread position: 3-246
Cow position: chr9:35657674-35657435 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 172, 33

Conread position: 3-268
Cow position: chr9:1294103-1294367 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 191
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 8, 42

Conread position: 3-322
Cow position: chr9:2185674-2185343 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 235
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 35, 68

Conread position: 3-388
Cow position: chr9:2630228-2629848 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 255
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 33, 128

Conread position: 3-474
Cow position: chr9:13220034-13219604 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 326
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 7, 105

Conread position: 3-476
Cow position: chr9:26712608-26713052 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 315
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 41, 17

Conread position: 3-481
Cow position: chr9:47001919-47001444 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 188

Conread position: 4-460
Cow position: chr9:52290354-52289884 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 302
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 34, 21

Conread position: 4-480
Cow position: chr9:6757283-6756810 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 330
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 34, 140

Conread position: 10-325
Cow position: chr9:3006571-3006889 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 220
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 29, 112

Conread position: 11-278
Cow position: chr9:59510308-59510036 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 186
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 33, 269

Conread position: 11-431
Cow position: chr9:28021249-28020834 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 68

Conread position: 11-431
Cow position: chr9:42568573-42568160 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 348, 23

Conread position: 11-480
Cow position: chr9:64118534-64118104 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 330
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 12, 87

Conread position: 12-217
Cow position: chr9:22650854-22650651 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 154
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 22, 0

Conread position: 12-431
Cow position: chr9:3548471-3548883 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 22

Conread position: 12-431
Cow position: chr9:10321524-10321114 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 270

Conread position: 12-431
Cow position: chr9:27034410-27033996 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 128

Conread position: 12-431
Cow position: chr9:31807239-31806826 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 22

Conread position: 12-431
Cow position: chr9:37971505-37971921 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 269

Conread position: 12-431
Cow position: chr9:42309385-42308969 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 270

Conread position: 12-460
Cow position: chr9:37163106-37163551 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 211

Conread position: 13-210
Cow position: chr9:60651763-60651959 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 26, 102

Conread position: 13-325
Cow position: chr9:781101-781416 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 215
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 26, 102

Conread position: 13-325
Cow position: chr9:33834572-33834888 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 253

Conread position: 13-371
Cow position: chr9:2052151-2051810 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 247
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 27, 84

Conread position: 13-473
Cow position: chr9:20310030-20310476 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 316
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 32, 90

Conread position: 13-481
Cow position: chr9:3938090-3938545 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 300
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 33, 170

Conread position: 14-277
Cow position: chr9:4532188-4531930 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 191
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 22, 0

Conread position: 14-279
Cow position: chr9:829859-830114 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 26, 5

Conread position: 14-325
Cow position: chr9:2500595-2500915 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 14-325
Cow position: chr9:25483573-25483255 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 223
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 25, 204

Conread position: 14-431
Cow position: chr9:1996220-1996621 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 141

Conread position: 14-475
Cow position: chr9:831733-832204 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 5

Conread position: 16-225
Cow position: chr9:34107020-34107231 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 151
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 23, 0

Conread position: 16-268
Cow position: chr9:31020506-31020255 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 191
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 27, 222

Conread position: 17-431
Cow position: chr9:651390-651790 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 283
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 20, 134

Conread position: 19-431
Cow position: chr9:6830848-6831256 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 263

Conread position: 23-233
Cow position: chr9:7062415-7062626 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 162
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 16, 0

Conread position: 29-185
Cow position: chr9:3024792-3024641 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 31-325
Cow position: chr9:25755520-25755823 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 213
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 8, 290

Conread position: 47-403
Cow position: chr9:6051374-6051722 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 128

Conread position: 48-225
Cow position: chr9:10315046-10314869 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 140
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 76, 140

Conread position: 63-431
Cow position: chr9:10855850-10855486 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 218

Conread position: 78-432
Cow position: chr9:34991284-34990954 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 257
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 228, 101

Conread position: 89-431
Cow position: chr9:8969419-8969747 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 146

Conread position: 114-385
Cow position: chr9:39992541-39992268 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 183
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 159, 68

Conread position: 115-478
Cow position: chr9:42904078-42904437 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 239
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 21, 27

Conread position: 205-431
Cow position: chr9:22650432-22650211 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 168
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 157, 76

Conread position: 209-472
Cow position: chr9:34107348-34107613 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 188
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 65, 47

Conread position: 219-431
Cow position: chr9:32967977-32967769 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 140, 58

Conread position: 236-515
Cow position: chr9:3803001-3802712 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 205
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 16, 73

Conread position: 308-483
Cow position: chr9:28677068-28676887 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 54, 0

Show alignments to all cow chromosomes.