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Cow genome map

           
Conread name:
           
Ova1-OVRM10106C09
        

               
Conread position:
               
1-201
               

               
Cow position:
               
chr29:24252262-24252077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
90, 15
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr29:17301558-17301341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
188, 45
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr29:11647118-11646914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr29:11053835-11054050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr29:25092137-25091910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
199, 21
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr29:41365135-41364906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
211, 57
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr29:17154803-17154568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr29:14484513-14484761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr29:40096992-40096733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
21, 51
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr29:38581004-38580752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
198, 57
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr29:19428683-19428435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr29:2744243-2744506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr29:42886415-42886146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
201, 45
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr29:1395621-1395369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr29:4520364-4520097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr29:699591-699855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
153, 53
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr29:17668515-17668255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
191, 49
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr29:34297544-34297805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
40, 48
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr29:32521898-32521628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
202, 56
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr29:34745634-34745895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
177, 23
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr29:41530874-41530609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 49
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr29:706925-707187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
162, 50
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr29:8669390-8669113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
199, 49
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr29:11915851-11915574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 49
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr29:12004738-12005006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
134, 54
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr29:15940606-15940880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
197, 57
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr29:16609772-16609496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
202, 59
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr29:17222437-17222166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
149, 49
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr29:31929013-31928737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 53
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr29:1325467-1325191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
199, 49
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr29:28868663-28868366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 57
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr29:1022320-1022012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
194, 47
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr29:2071548-2071834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
288, 49
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr29:24952712-24952420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 49
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr29:35292116-35291833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr29:22068716-22069027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
149, 56
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr29:25333435-25333735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
1-342
               

               
Cow position:
               
chr29:478132-477805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
135, 43
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chr29:18462518-18462696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
7, 85
               

               
Conread position:
               
2-235
               

               
Cow position:
               
chr29:30188314-30188534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
2-276
               

               
Cow position:
               
chr29:28775435-28775689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
7, 54
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chr29:28195493-28195788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 6
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr29:45384149-45383962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
3-220
               

               
Cow position:
               
chr29:37618329-37618127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
12, 49
               

               
Conread position:
               
3-272
               

               
Cow position:
               
chr29:22936294-22936049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr29:11705143-11704881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
200, 54
               

               
Conread position:
               
7-199
               

               
Cow position:
               
chr29:26416372-26416201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
7-255
               

               
Cow position:
               
chr29:22778157-22778395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 47
               

               
Conread position:
               
7-287
               

               
Cow position:
               
chr29:34744602-34744862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
191, 50
               

               
Conread position:
               
8-155
               

               
Cow position:
               
chr29:13028461-13028321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
8-179
               

               
Cow position:
               
chr29:18579993-18580154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
8-198
               

               
Cow position:
               
chr29:12025450-12025629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
8-201
               

               
Cow position:
               
chr29:25432416-25432242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
20, 12
               

               
Conread position:
               
8-219
               

               
Cow position:
               
chr29:23243861-23244057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
8-230
               

               
Cow position:
               
chr29:4334743-4334539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
8-254
               

               
Cow position:
               
chr29:6337680-6337450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
8-274
               

               
Cow position:
               
chr29:7966263-7966014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
148, 43
               

               
Conread position:
               
8-276
               

               
Cow position:
               
chr29:749888-750134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
151, 46
               

               
Conread position:
               
8-276
               

               
Cow position:
               
chr29:13639350-13639601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
8-281
               

               
Cow position:
               
chr29:36217132-36216878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
8-285
               

               
Cow position:
               
chr29:16309760-16309508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
8-285
               

               
Cow position:
               
chr29:17409352-17409087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
142, 49
               

               
Conread position:
               
8-285
               

               
Cow position:
               
chr29:25737397-25737659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
8-285
               

               
Cow position:
               
chr29:29057196-29056942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
204, 42
               

               
Conread position:
               
8-285
               

               
Cow position:
               
chr29:44378397-44378660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
144, 41
               

               
Conread position:
               
8-288
               

               
Cow position:
               
chr29:36183298-36183029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 47
               

               
Conread position:
               
8-308
               

               
Cow position:
               
chr29:4120871-4120581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
153, 47
               

               
Conread position:
               
9-262
               

               
Cow position:
               
chr29:463638-463874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
9-272
               

               
Cow position:
               
chr29:39643192-39642946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
9-277
               

               
Cow position:
               
chr29:9912192-9911942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
9-280
               

               
Cow position:
               
chr29:24624265-24624008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
186, 9
               

               
Conread position:
               
9-285
               

               
Cow position:
               
chr29:24345432-24345706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
191, 7
               

               
Conread position:
               
9-285
               

               
Cow position:
               
chr29:31926273-31926532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
9-309
               

               
Cow position:
               
chr29:40583809-40583531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
10-201
               

               
Cow position:
               
chr29:5064513-5064326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
55, 109
               

               
Conread position:
               
10-256
               

               
Cow position:
               
chr29:30440949-30440711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
152, 40
               

               
Conread position:
               
10-285
               

               
Cow position:
               
chr29:22162234-22162495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 45
               

               
Conread position:
               
10-285
               

               
Cow position:
               
chr29:32290624-32290360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
145, 40
               

               
Conread position:
               
11-184
               

               
Cow position:
               
chr29:4051972-4052128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
11-302
               

               
Cow position:
               
chr29:9139436-9139148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 43
               

               
Conread position:
               
11-308
               

               
Cow position:
               
chr29:26735043-26734768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
13-272
               

               
Cow position:
               
chr29:868787-868542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
193, 44
               

               
Conread position:
               
15-276
               

               
Cow position:
               
chr29:24103529-24103783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 45
               

               
Conread position:
               
16-219
               

               
Cow position:
               
chr29:40615511-40615699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
5, 33
               

               
Conread position:
               
16-241
               

               
Cow position:
               
chr29:6870769-6870984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
52, 34
               

               
Conread position:
               
18-280
               

               
Cow position:
               
chr29:4194099-4194359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 47
               

               
Conread position:
               
20-272
               

               
Cow position:
               
chr29:25268135-25267887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
180, 47
               

               
Conread position:
               
30-276
               

               
Cow position:
               
chr29:2644304-2644542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 27
               

               
Conread position:
               
43-302
               

               
Cow position:
               
chr29:26654042-26654302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
31, 70
               

               
Conread position:
               
43-309
               

               
Cow position:
               
chr29:20626571-20626311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
49-285
               

               
Cow position:
               
chr29:12451365-12451130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
38, 9
               

               
Conread position:
               
50-285
               

               
Cow position:
               
chr29:40656686-40656451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
12, 37
               

               
Conread position:
               
50-309
               

               
Cow position:
               
chr29:11684994-11684746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
52-241
               

               
Cow position:
               
chr29:3100272-3100461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
145, 31
               

               
Conread position:
               
52-309
               

               
Cow position:
               
chr29:15944555-15944303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
104, 31
               

               
Conread position:
               
58-285
               

               
Cow position:
               
chr29:356300-356084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
16, 63
               

               
Conread position:
               
60-285
               

               
Cow position:
               
chr29:35636404-35636182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
101, 15
               

               
Conread position:
               
60-310
               

               
Cow position:
               
chr29:40117548-40117300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
49, 101
               

               
Conread position:
               
61-275
               

               
Cow position:
               
chr29:35281470-35281267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
61-285
               

               
Cow position:
               
chr29:19389464-19389244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 143
               

               
Conread position:
               
61-285
               

               
Cow position:
               
chr29:20903313-20903530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
139, 10
               

               
Conread position:
               
61-285
               

               
Cow position:
               
chr29:44901728-44901944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
62-275
               

               
Cow position:
               
chr29:18021705-18021908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
44, 30
               

               
Conread position:
               
62-285
               

               
Cow position:
               
chr29:20673825-20674048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
94, 24
               

               
Conread position:
               
67-243
               

               
Cow position:
               
chr29:39329618-39329798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
23, 97
               

               
Conread position:
               
67-272
               

               
Cow position:
               
chr29:14501560-14501360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
89, 15
               

               
Conread position:
               
67-275
               

               
Cow position:
               
chr29:87046-87253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
133, 8
               

               
Conread position:
               
67-285
               

               
Cow position:
               
chr29:41747414-41747198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
86, 9
               

               
Conread position:
               
68-283
               

               
Cow position:
               
chr29:32767553-32767761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
69-267
               

               
Cow position:
               
chr29:3711359-3711161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
83, 120
               

               
Conread position:
               
69-285
               

               
Cow position:
               
chr29:21443372-21443586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
87, 135
               

               
Conread position:
               
69-285
               

               
Cow position:
               
chr29:40891726-40891944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 209
               

               
Conread position:
               
70-268
               

               
Cow position:
               
chr29:4480204-4480402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
130, 89
               

               
Conread position:
               
70-275
               

               
Cow position:
               
chr29:94587-94782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
71-200
               

               
Cow position:
               
chr29:44008814-44008942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
71-211
               

               
Cow position:
               
chr29:17297100-17296963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
81, 12
               

               
Conread position:
               
71-270
               

               
Cow position:
               
chr29:19821254-19821068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
71-272
               

               
Cow position:
               
chr29:22175654-22175460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
141, 88
               

               
Conread position:
               
71-275
               

               
Cow position:
               
chr29:3503019-3502824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
71-275
               

               
Cow position:
               
chr29:16757025-16756821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
129, 22
               

               
Conread position:
               
71-276
               

               
Cow position:
               
chr29:2984855-2984650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 134
               

               
Conread position:
               
71-276
               

               
Cow position:
               
chr29:4066053-4065853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
141, 88
               

               
Conread position:
               
71-276
               

               
Cow position:
               
chr29:10838917-10838716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
71-276
               

               
Cow position:
               
chr29:12680126-12679920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
11, 83
               

               
Conread position:
               
71-280
               

               
Cow position:
               
chr29:17131652-17131845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
71-283
               

               
Cow position:
               
chr29:13634334-13634540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
132, 62
               

               
Conread position:
               
71-283
               

               
Cow position:
               
chr29:40337562-40337764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
71-284
               

               
Cow position:
               
chr29:9686035-9686242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
71-285
               

               
Cow position:
               
chr29:6925978-6925776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
71-285
               

               
Cow position:
               
chr29:10235166-10235357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
71-285
               

               
Cow position:
               
chr29:11397957-11398159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
175, 86
               

               
Conread position:
               
71-285
               

               
Cow position:
               
chr29:18212026-18212224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
141, 45
               

               
Conread position:
               
71-285
               

               
Cow position:
               
chr29:23983991-23984206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
129, 78
               

               
Conread position:
               
71-285
               

               
Cow position:
               
chr29:25474887-25474665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
81, 216
               

               
Conread position:
               
71-285
               

               
Cow position:
               
chr29:27833955-27833745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
71-285
               

               
Cow position:
               
chr29:32799741-32799945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
41, 46
               

               
Conread position:
               
71-285
               

               
Cow position:
               
chr29:32963523-32963312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
129, 78
               

               
Conread position:
               
71-309
               

               
Cow position:
               
chr29:6217581-6217814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
137, 86
               

               
Conread position:
               
72-272
               

               
Cow position:
               
chr29:4327458-4327260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
181, 85
               

               
Conread position:
               
72-276
               

               
Cow position:
               
chr29:37599243-37599439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
72-279
               

               
Cow position:
               
chr29:2522534-2522341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
72-284
               

               
Cow position:
               
chr29:24119772-24119978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
81, 48
               

               
Conread position:
               
73-285
               

               
Cow position:
               
chr29:6636064-6635862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
55, 86
               

               
Conread position:
               
73-285
               

               
Cow position:
               
chr29:12783991-12784197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
75-201
               

               
Cow position:
               
chr29:29942767-29942894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
75-219
               

               
Cow position:
               
chr29:456826-456972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 10
               

               
Conread position:
               
75-227
               

               
Cow position:
               
chr29:20910730-20910886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
75-231
               

               
Cow position:
               
chr29:43956856-43956704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
75-264
               

               
Cow position:
               
chr29:2533022-2532839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
124, 45
               

               
Conread position:
               
75-274
               

               
Cow position:
               
chr29:23697942-23697746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
86, 110
               

               
Conread position:
               
75-276
               

               
Cow position:
               
chr29:19907318-19907122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
63, 69
               

               
Conread position:
               
75-276
               

               
Cow position:
               
chr29:42406635-42406427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
75-280
               

               
Cow position:
               
chr29:19253857-19254061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
81, 129
               

               
Conread position:
               
75-280
               

               
Cow position:
               
chr29:24292833-24292637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
85, 50
               

               
Conread position:
               
75-284
               

               
Cow position:
               
chr29:45589628-45589825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
87, 40
               

               
Conread position:
               
75-285
               

               
Cow position:
               
chr29:6293511-6293709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
75-285
               

               
Cow position:
               
chr29:7407925-7408131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
44, 68
               

               
Conread position:
               
75-285
               

               
Cow position:
               
chr29:11696493-11696291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
75-285
               

               
Cow position:
               
chr29:12798882-12798688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
75-285
               

               
Cow position:
               
chr29:13372628-13372421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
75-285
               

               
Cow position:
               
chr29:21000606-21000399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
125, 84
               

               
Conread position:
               
75-285
               

               
Cow position:
               
chr29:37292742-37292535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
145, 82
               

               
Conread position:
               
75-285
               

               
Cow position:
               
chr29:45650380-45650584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
75-288
               

               
Cow position:
               
chr29:26615759-26615970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
123, 84
               

               
Conread position:
               
75-309
               

               
Cow position:
               
chr29:6844666-6844895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 18
               

               
Conread position:
               
75-309
               

               
Cow position:
               
chr29:9709658-9709433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
75-309
               

               
Cow position:
               
chr29:26017541-26017777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
77, 19
               

               
Conread position:
               
75-309
               

               
Cow position:
               
chr29:39567650-39567422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
107, 82
               

               
Conread position:
               
75-331
               

               
Cow position:
               
chr29:19338950-19338694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 208
               

               
Conread position:
               
76-201
               

               
Cow position:
               
chr29:4085281-4085158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
76-285
               

               
Cow position:
               
chr29:5977151-5977363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
76, 18
               

               
Conread position:
               
76-285
               

               
Cow position:
               
chr29:28884046-28883838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
131, 81
               

               
Conread position:
               
76-285
               

               
Cow position:
               
chr29:29769389-29769588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
77-258
               

               
Cow position:
               
chr29:16657651-16657469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
123, 156
               

               
Conread position:
               
77-258
               

               
Cow position:
               
chr29:31489282-31489103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
123, 74
               

               
Conread position:
               
77-258
               

               
Cow position:
               
chr29:36037663-36037483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
79, 124
               

               
Conread position:
               
77-262
               

               
Cow position:
               
chr29:5109243-5109431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
77-272
               

               
Cow position:
               
chr29:6286197-6286388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
77-276
               

               
Cow position:
               
chr29:22613387-22613198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
77-285
               

               
Cow position:
               
chr29:4805193-4804991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
78-276
               

               
Cow position:
               
chr29:19792313-19792514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
78, 182
               

               
Conread position:
               
78-285
               

               
Cow position:
               
chr29:8163898-8164105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
67, 85
               

               
Conread position:
               
78-310
               

               
Cow position:
               
chr29:20178173-20178392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
80-283
               

               
Cow position:
               
chr29:29477076-29477272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
80-284
               

               
Cow position:
               
chr29:26980357-26980154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
121, 79
               

               
Conread position:
               
81-284
               

               
Cow position:
               
chr29:26991200-26991002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
92, 78
               

               
Conread position:
               
81-309
               

               
Cow position:
               
chr29:18878541-18878767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
76, 31
               

               
Conread position:
               
82-276
               

               
Cow position:
               
chr29:3704246-3704438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
74, 25
               

               
Conread position:
               
82-277
               

               
Cow position:
               
chr29:44310070-44310264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
74, 122
               

               
Conread position:
               
83-259
               

               
Cow position:
               
chr29:35677592-35677762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
73, 102
               

               
Conread position:
               
85-276
               

               
Cow position:
               
chr29:14615304-14615492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
70, 119
               

               
Conread position:
               
85-310
               

               
Cow position:
               
chr29:13615684-13615910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
67, 123
               

               
Conread position:
               
86-238
               

               
Cow position:
               
chr29:26508445-26508290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
47, 136
               

               
Conread position:
               
86-264
               

               
Cow position:
               
chr29:2414862-2415039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
82, 87
               

               
Conread position:
               
86-285
               

               
Cow position:
               
chr29:34359854-34360036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
90-285
               

               
Cow position:
               
chr29:8935438-8935244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
110, 67
               

               
Conread position:
               
94-285
               

               
Cow position:
               
chr29:39111371-39111550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
94-309
               

               
Cow position:
               
chr29:2694882-2694668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
104, 49
               

               
Conread position:
               
95-276
               

               
Cow position:
               
chr29:38581919-38581734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
107, 62
               

               
Conread position:
               
95-285
               

               
Cow position:
               
chr29:26519517-26519703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
11, 113
               

               
Conread position:
               
96-284
               

               
Cow position:
               
chr29:10659396-10659589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
104, 188
               

               
Conread position:
               
97-283
               

               
Cow position:
               
chr29:21933171-21933353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
59, 98
               

               
Conread position:
               
97-285
               

               
Cow position:
               
chr29:1933613-1933800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
60, 107
               

               
Conread position:
               
97-285
               

               
Cow position:
               
chr29:17109909-17109728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
97-309
               

               
Cow position:
               
chr29:35501711-35501914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
98-214
               

               
Cow position:
               
chr29:23951626-23951741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
58, 107
               

               
Conread position:
               
98-280
               

               
Cow position:
               
chr29:22714784-22714966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
107, 61
               

               
Conread position:
               
99-285
               

               
Cow position:
               
chr29:37785230-37785421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
64, 185
               

               
Conread position:
               
101-240
               

               
Cow position:
               
chr29:28979544-28979678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
101-285
               

               
Cow position:
               
chr29:11562552-11562372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
101, 58
               

               
Conread position:
               
101-285
               

               
Cow position:
               
chr29:28197068-28197250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
70, 56
               

               
Conread position:
               
102-233
               

               
Cow position:
               
chr29:32211120-32211251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
99, 57
               

               
Conread position:
               
102-259
               

               
Cow position:
               
chr29:28446320-28446477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
98, 57
               

               
Conread position:
               
102-285
               

               
Cow position:
               
chr29:5098824-5099004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
102-285
               

               
Cow position:
               
chr29:40166183-40166000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
7, 58
               

               
Conread position:
               
106-285
               

               
Cow position:
               
chr29:35434808-35434628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
10, 26
               

               
Conread position:
               
108-283
               

               
Cow position:
               
chr29:20933642-20933465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
45, 173
               

               
Conread position:
               
108-284
               

               
Cow position:
               
chr29:19762206-19762031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
92, 53
               

               
Conread position:
               
114-309
               

               
Cow position:
               
chr29:686262-686457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
40, 93
               

               
Conread position:
               
121-264
               

               
Cow position:
               
chr29:5677709-5677562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
35, 0
               
Show alignments to all cow chromosomes.