Cow genome map

Conread name: Ova1-OVRM10106F05

Conread position: 1-203
Cow position: chr16:39820901-39820695 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 158
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 75, 21

Conread position: 1-220
Cow position: chr16:56551396-56551168 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 113, 63

Conread position: 1-222
Cow position: chr16:36362091-36362310 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 98, 10

Conread position: 1-262
Cow position: chr16:10808426-10808167 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 198
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 154, 85

Conread position: 1-264
Cow position: chr16:16276237-16276510 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 199
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 98, 26

Conread position: 1-365
Cow position: chr16:36282670-36282291 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 75

Conread position: 1-372
Cow position: chr16:6549253-6549633 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 226

Conread position: 1-390
Cow position: chr16:11052431-11052043 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 28

Conread position: 1-411
Cow position: chr16:14669567-14669142 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 265
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 10, 101

Conread position: 1-448
Cow position: chr16:31375991-31376413 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 32

Conread position: 1-463
Cow position: chr16:25156950-25157419 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 342

Conread position: 1-578
Cow position: chr16:54647597-54647030 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 253

Conread position: 1-613
Cow position: chr16:49257314-49257948 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 97

Conread position: 1-616
Cow position: chr16:18687853-18688485 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 28

Conread position: 1-626
Cow position: chr16:20255040-20255662 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 235

Conread position: 1-626
Cow position: chr16:29676039-29676659 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 39

Conread position: 1-665
Cow position: chr16:55111578-55112251 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 427
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 77, 23

Conread position: 1-704
Cow position: chr16:36232335-36233042 (view UCSC Genome Browser custom track)
Alignm length: 727
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 37

Conread position: 1-708
Cow position: chr16:5888753-5888017 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 217

Conread position: 1-712
Cow position: chr16:9929814-9929125 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 162

Conread position: 2-706
Cow position: chr16:44965321-44964614 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 48

Conread position: 3-152
Cow position: chr16:14666562-14666715 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 70, 0

Conread position: 3-168
Cow position: chr16:5483590-5483421 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 72, 110

Conread position: 3-168
Cow position: chr16:34529592-34529425 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 73, 30

Conread position: 3-222
Cow position: chr16:836297-836075 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 151
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 73, 143

Conread position: 3-234
Cow position: chr16:25187910-25187668 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 73, 233

Conread position: 3-274
Cow position: chr16:2411703-2411984 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 3-352
Cow position: chr16:23982578-23982219 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 10

Conread position: 3-354
Cow position: chr16:27734536-27734899 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 3-354
Cow position: chr16:52815367-52815709 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 176

Conread position: 3-369
Cow position: chr16:47562954-47562587 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 251
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 73, 151

Conread position: 3-382
Cow position: chr16:26663016-26662628 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 276

Conread position: 3-405
Cow position: chr16:24881423-24881832 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 134

Conread position: 3-411
Cow position: chr16:15491976-15491559 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 322

Conread position: 3-412
Cow position: chr16:2239467-2239878 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 10

Conread position: 3-415
Cow position: chr16:31592637-31593061 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 261

Conread position: 3-421
Cow position: chr16:10437510-10437089 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 74

Conread position: 3-433
Cow position: chr16:25153043-25152608 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 310
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 58, 213

Conread position: 3-446
Cow position: chr16:5918753-5918291 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 261

Conread position: 3-446
Cow position: chr16:6942891-6942432 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 3-446
Cow position: chr16:28171092-28171550 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 113

Conread position: 3-447
Cow position: chr16:32606096-32605633 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 0

Conread position: 3-448
Cow position: chr16:23253237-23253692 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 114

Conread position: 3-505
Cow position: chr16:25341236-25340739 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 115

Conread position: 3-507
Cow position: chr16:43898000-43898507 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 116

Conread position: 3-566
Cow position: chr16:15566017-15565450 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 56

Conread position: 3-597
Cow position: chr16:2483872-2484471 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 13

Conread position: 3-597
Cow position: chr16:16688138-16687536 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 339

Conread position: 3-599
Cow position: chr16:25084889-25084284 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 322

Conread position: 3-602
Cow position: chr16:40296907-40297512 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 210

Conread position: 3-603
Cow position: chr16:1568187-1568784 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 190

Conread position: 3-603
Cow position: chr16:8816837-8817445 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 145

Conread position: 3-603
Cow position: chr16:10204149-10204756 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 94

Conread position: 3-603
Cow position: chr16:12538656-12539263 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 446

Conread position: 3-603
Cow position: chr16:15184071-15183467 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 145

Conread position: 3-603
Cow position: chr16:25440885-25440276 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 418

Conread position: 3-603
Cow position: chr16:28471827-28472437 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 439

Conread position: 3-603
Cow position: chr16:29046289-29045691 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 285

Conread position: 3-613
Cow position: chr16:5661128-5660491 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 56

Conread position: 3-620
Cow position: chr16:2728033-2728672 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 156

Conread position: 3-629
Cow position: chr16:407767-408395 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 51

Conread position: 3-629
Cow position: chr16:1430491-1429858 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 37

Conread position: 3-686
Cow position: chr16:40886990-40887673 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 76

Conread position: 4-383
Cow position: chr16:7905911-7905520 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 194

Conread position: 5-598
Cow position: chr16:49235850-49236450 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 39

Conread position: 5-602
Cow position: chr16:25458206-25458813 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 416

Conread position: 8-670
Cow position: chr16:42051108-42051734 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 110

Conread position: 9-371
Cow position: chr16:42740157-42740527 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 241

Conread position: 19-604
Cow position: chr16:32000-31389 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 208

Conread position: 24-446
Cow position: chr16:4303224-4303653 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 64

Conread position: 40-620
Cow position: chr16:7676467-7677052 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 258

Conread position: 43-609
Cow position: chr16:51685663-51685106 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 50

Conread position: 50-446
Cow position: chr16:10376056-10376453 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 240
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 115, 216

Conread position: 60-708
Cow position: chr16:32935345-32934693 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 19

Conread position: 69-636
Cow position: chr16:29032115-29031541 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 43

Conread position: 71-626
Cow position: chr16:19713650-19714198 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 308

Conread position: 80-602
Cow position: chr16:9777321-9776798 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 315

Conread position: 94-628
Cow position: chr16:16029931-16029411 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 353
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 59, 16

Conread position: 97-421
Cow position: chr16:27004538-27004218 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 220
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 58, 150

Conread position: 114-708
Cow position: chr16:29982422-29981826 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 106

Conread position: 129-403
Cow position: chr16:15369559-15369298 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 207
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 234, 11

Conread position: 145-395
Cow position: chr16:14422827-14422580 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 178
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 245, 10

Conread position: 160-446
Cow position: chr16:21185381-21185091 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 202
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 257, 0

Conread position: 188-603
Cow position: chr16:14666716-14667128 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 339, 242

Conread position: 197-624
Cow position: chr16:39818689-39818271 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 171

Conread position: 201-352
Cow position: chr16:5483265-5483414 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 74, 0

Conread position: 207-708
Cow position: chr16:5648291-5647799 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 52

Conread position: 212-677
Cow position: chr16:5589247-5588783 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 306
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 328, 30

Conread position: 239-585
Cow position: chr16:12302410-12302779 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 256
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 127, 216

Conread position: 251-421
Cow position: chr16:45569097-45568930 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 9, 45

Conread position: 280-603
Cow position: chr16:2412037-2412355 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 217
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 227, 53

Conread position: 281-602
Cow position: chr16:51083551-51083231 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 232
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 85, 9

Conread position: 332-708
Cow position: chr16:334919-334552 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 32

Conread position: 355-702
Cow position: chr16:44673913-44673558 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 275

Conread position: 356-708
Cow position: chr16:49955615-49955955 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 44

Conread position: 367-622
Cow position: chr16:36282323-36282062 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 175
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 28, 37

Conread position: 453-689
Cow position: chr16:25152651-25152420 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 172
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 13, 158

Conread position: 457-613
Cow position: chr16:28233852-28234002 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 54, 0

Conread position: 457-708
Cow position: chr16:14422547-14422288 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 176
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 78, 196

Conread position: 513-709
Cow position: chr16:45568620-45568419 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 143
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 27, 187

Show alignments to all cow chromosomes.