Cow genome map
| Conread name: | Ova1-OVRM10106F05 |
| Conread position: | 1-162 |
| Cow position: | chr17:20087884-20088048 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 75, 58 |
| Conread position: | 1-250 |
| Cow position: | chr17:20183382-20183640 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1-258 |
| Cow position: | chr17:42264352-42264105 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-372 |
| Cow position: | chr17:44853087-44853459 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 154 |
| Conread position: | 1-384 |
| Cow position: | chr17:35592062-35591680 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 246 |
| Conread position: | 1-399 |
| Cow position: | chr17:16889970-16889565 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 233 |
| Conread position: | 1-616 |
| Cow position: | chr17:15370923-15370319 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 49 |
| Conread position: | 1-624 |
| Cow position: | chr17:6002165-6002785 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 411 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 75, 21 |
| Conread position: | 1-626 |
| Cow position: | chr17:1283935-1284538 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 39 |
| Conread position: | 1-626 |
| Cow position: | chr17:23857189-23857803 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 349 |
| Conread position: | 1-638 |
| Cow position: | chr17:14325649-14326271 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 345 |
| Conread position: | 1-675 |
| Cow position: | chr17:20401535-20400844 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 130 |
| Conread position: | 1-699 |
| Cow position: | chr17:2588163-2587462 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 73 |
| Conread position: | 1-706 |
| Cow position: | chr17:152629-153323 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 46 |
| Conread position: | 1-710 |
| Cow position: | chr17:2147047-2146357 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 123 |
| Conread position: | 1-711 |
| Cow position: | chr17:4081494-4080772 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 54 |
| Conread position: | 2-168 |
| Cow position: | chr17:22132077-22131910 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 97, 78 |
| Conread position: | 3-168 |
| Cow position: | chr17:6259690-6259521 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 73, 110 |
| Conread position: | 3-222 |
| Cow position: | chr17:1946823-1946590 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 3-305 |
| Cow position: | chr17:1879937-1879623 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 233 |
| Conread position: | 3-307 |
| Cow position: | chr17:15850245-15849930 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 65, 84 |
| Conread position: | 3-335 |
| Cow position: | chr17:2173725-2173384 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 241 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 69, 247 |
| Conread position: | 3-383 |
| Cow position: | chr17:28109929-28109550 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 204 |
| Conread position: | 3-405 |
| Cow position: | chr17:3642991-3643404 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 324 |
| Conread position: | 3-405 |
| Cow position: | chr17:13929513-13929105 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 274 |
| Conread position: | 3-405 |
| Cow position: | chr17:25737508-25737095 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-407 |
| Cow position: | chr17:15435636-15435224 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 233 |
| Conread position: | 3-418 |
| Cow position: | chr17:9653611-9654031 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 388 |
| Conread position: | 3-446 |
| Cow position: | chr17:228457-228903 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 87 |
| Conread position: | 3-446 |
| Cow position: | chr17:8208952-8208496 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 263 |
| Conread position: | 3-446 |
| Cow position: | chr17:14217179-14217639 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-446 |
| Cow position: | chr17:15143524-15143974 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 271 |
| Conread position: | 3-446 |
| Cow position: | chr17:22160761-22160302 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-446 |
| Cow position: | chr17:24633799-24633343 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 134 |
| Conread position: | 3-448 |
| Cow position: | chr17:14894006-14893548 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 192 |
| Conread position: | 3-463 |
| Cow position: | chr17:15157118-15157582 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 267 |
| Conread position: | 3-463 |
| Cow position: | chr17:24780893-24780421 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-463 |
| Cow position: | chr17:43988380-43987889 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 324 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-534 |
| Cow position: | chr17:16859711-16860261 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 445 |
| Conread position: | 3-559 |
| Cow position: | chr17:2248737-2249300 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 10 |
| Conread position: | 3-573 |
| Cow position: | chr17:11087879-11088464 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 230 |
| Conread position: | 3-599 |
| Cow position: | chr17:4059947-4059347 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 10 |
| Conread position: | 3-603 |
| Cow position: | chr17:40804242-40803639 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 113 |
| Conread position: | 3-611 |
| Cow position: | chr17:27345650-27345049 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 214 |
| Conread position: | 3-612 |
| Cow position: | chr17:6089316-6089925 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 365 |
| Conread position: | 3-613 |
| Cow position: | chr17:1382969-1383618 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 630 |
| Conread position: | 3-613 |
| Cow position: | chr17:2261954-2261314 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 56 |
| Conread position: | 3-613 |
| Cow position: | chr17:20665881-20666527 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 543 |
| Conread position: | 3-620 |
| Cow position: | chr17:2579403-2578782 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 115 |
| Conread position: | 3-620 |
| Cow position: | chr17:13856924-13857566 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 116 |
| Conread position: | 3-620 |
| Cow position: | chr17:19269521-19270131 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 320 |
| Conread position: | 3-629 |
| Cow position: | chr17:15322658-15322047 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 61 |
| Conread position: | 3-633 |
| Cow position: | chr17:18103835-18104473 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 439 |
| Conread position: | 4-372 |
| Cow position: | chr17:22429638-22430013 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 5-454 |
| Cow position: | chr17:249761-249307 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 5-470 |
| Cow position: | chr17:14308462-14308940 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 301 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 71, 8 |
| Conread position: | 8-426 |
| Cow position: | chr17:4295206-4294807 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 47 |
| Conread position: | 17-308 |
| Cow position: | chr17:2738209-2737907 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 237 |
| Conread position: | 29-385 |
| Cow position: | chr17:39933501-39933139 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 203 |
| Conread position: | 48-446 |
| Cow position: | chr17:11783171-11782757 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 127-365 |
| Cow position: | chr17:32024479-32024724 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 157-372 |
| Cow position: | chr17:20088074-20088283 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 14, 7 |
| Conread position: | 159-635 |
| Cow position: | chr17:2287054-2286594 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 65 |
| Conread position: | 161-390 |
| Cow position: | chr17:22131617-22131387 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 161-613 |
| Cow position: | chr17:6259376-6258932 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 36 |
| Conread position: | 162-708 |
| Cow position: | chr17:31200391-31200942 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 271 |
| Conread position: | 163-412 |
| Cow position: | chr17:55009-55255 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 211, 61 |
| Conread position: | 177-642 |
| Cow position: | chr17:12670679-12671128 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 85 |
| Conread position: | 182-463 |
| Cow position: | chr17:6119805-6119520 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 235, 0 |
| Conread position: | 207-708 |
| Cow position: | chr17:18302144-18302635 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 331, 58 |
| Conread position: | 216-622 |
| Cow position: | chr17:1945798-1945409 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 228-383 |
| Cow position: | chr17:18186619-18186773 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 232-446 |
| Cow position: | chr17:31768666-31768884 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 162, 145 |
| Conread position: | 247-613 |
| Cow position: | chr17:181206-180826 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 140, 195 |
| Conread position: | 252-415 |
| Cow position: | chr17:3710613-3710776 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 304-628 |
| Cow position: | chr17:1659318-1659636 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 94 |
| Conread position: | 306-709 |
| Cow position: | chr17:42264084-42263690 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 31 |
| Conread position: | 359-707 |
| Cow position: | chr17:3694192-3694547 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 38 |
| Conread position: | 366-708 |
| Cow position: | chr17:15417327-15416979 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 397-620 |
| Cow position: | chr17:35591696-35591465 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 85 |
| Conread position: | 422-709 |
| Cow position: | chr17:4294650-4294371 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 10, 55 |
| Conread position: | 457-611 |
| Cow position: | chr17:44853511-44853669 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 57 |
| Conread position: | 457-648 |
| Cow position: | chr17:20024407-20024214 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 83, 41 |
Show alignments to all cow chromosomes.