Cow genome map

Conread name: Ova1-OVRM10106F05

Conread position: 1-165
Cow position: chr18:2886966-2887134 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 71, 0

Conread position: 1-171
Cow position: chr18:54044648-54044822 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 140
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 97, 0

Conread position: 1-202
Cow position: chr18:29236867-29236660 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 147
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 71, 96

Conread position: 1-222
Cow position: chr18:53785891-53785663 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 97, 12

Conread position: 1-264
Cow position: chr18:6869202-6869474 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 252

Conread position: 1-264
Cow position: chr18:43201112-43200846 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 94

Conread position: 1-363
Cow position: chr18:17992508-17992880 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 49

Conread position: 1-365
Cow position: chr18:51258032-51257662 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 102

Conread position: 1-368
Cow position: chr18:1521183-1520804 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 12

Conread position: 1-372
Cow position: chr18:2019631-2020009 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 243

Conread position: 1-372
Cow position: chr18:47719529-47719897 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 65

Conread position: 1-381
Cow position: chr18:18897551-18897176 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 243
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 98, 76

Conread position: 1-389
Cow position: chr18:29900364-29899982 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 250
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 87, 63

Conread position: 1-390
Cow position: chr18:23944320-23944717 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 23

Conread position: 1-411
Cow position: chr18:37599474-37599897 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 280
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 98, 267

Conread position: 1-507
Cow position: chr18:29070306-29069800 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 316
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 54, 120

Conread position: 1-603
Cow position: chr18:16176557-16177169 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 26

Conread position: 1-613
Cow position: chr18:33358922-33358309 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 387

Conread position: 1-613
Cow position: chr18:43146871-43147478 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 395

Conread position: 1-615
Cow position: chr18:9186712-9187329 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 375
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 72, 210

Conread position: 1-626
Cow position: chr18:32293823-32293211 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 48

Conread position: 2-260
Cow position: chr18:16534032-16533768 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 70, 11

Conread position: 2-650
Cow position: chr18:39748632-39747994 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 330

Conread position: 3-282
Cow position: chr18:51689679-51689390 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 175
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 69, 232

Conread position: 3-351
Cow position: chr18:27987080-27986722 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 115

Conread position: 3-362
Cow position: chr18:40478440-40478067 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 302

Conread position: 3-374
Cow position: chr18:22602540-22602157 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 285

Conread position: 3-390
Cow position: chr18:48221930-48221533 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 233

Conread position: 3-395
Cow position: chr18:51310633-51310237 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 129

Conread position: 3-405
Cow position: chr18:54171792-54172204 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 272

Conread position: 3-419
Cow position: chr18:33953515-33953941 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 229

Conread position: 3-422
Cow position: chr18:14416029-14415606 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 390

Conread position: 3-446
Cow position: chr18:19352438-19351972 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 232

Conread position: 3-446
Cow position: chr18:44621812-44621352 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 3-463
Cow position: chr18:47742071-47741595 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 3-463
Cow position: chr18:55088872-55089347 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 3-602
Cow position: chr18:41840772-41841380 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 439

Conread position: 3-603
Cow position: chr18:28973850-28974453 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 230

Conread position: 3-603
Cow position: chr18:36508386-36507776 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 439

Conread position: 3-613
Cow position: chr18:11275053-11275678 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 120

Conread position: 3-613
Cow position: chr18:16078752-16078109 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 371

Conread position: 3-613
Cow position: chr18:16659952-16660575 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 114

Conread position: 3-613
Cow position: chr18:33335920-33335299 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 26

Conread position: 3-613
Cow position: chr18:37505116-37504500 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 273

Conread position: 3-614
Cow position: chr18:23797700-23797082 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 137

Conread position: 3-614
Cow position: chr18:54024306-54024933 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 73

Conread position: 3-708
Cow position: chr18:45958736-45958037 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 129

Conread position: 4-443
Cow position: chr18:51660469-51660024 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 269

Conread position: 4-534
Cow position: chr18:51480890-51480358 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 409

Conread position: 10-163
Cow position: chr18:22869801-22869644 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 62, 0

Conread position: 15-352
Cow position: chr18:32652036-32651688 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 41-337
Cow position: chr18:19539860-19540163 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 218
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 35, 254

Conread position: 43-375
Cow position: chr18:33268855-33268513 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 284

Conread position: 43-447
Cow position: chr18:37585651-37586070 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 43-608
Cow position: chr18:25350052-25349480 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 70

Conread position: 43-635
Cow position: chr18:35335502-35334909 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 69

Conread position: 48-299
Cow position: chr18:51464469-51464726 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 182
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 28, 0

Conread position: 48-299
Cow position: chr18:51610997-51610751 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 28, 115

Conread position: 59-603
Cow position: chr18:27838306-27838852 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 277

Conread position: 155-454
Cow position: chr18:54002384-54002090 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 205
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 252, 136

Conread position: 156-710
Cow position: chr18:35288139-35287609 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 80

Conread position: 160-592
Cow position: chr18:14130178-14129747 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 364, 159

Conread position: 189-521
Cow position: chr18:42244700-42245014 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 226
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 42, 74

Conread position: 214-613
Cow position: chr18:29236609-29236202 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 352

Conread position: 230-446
Cow position: chr18:23746158-23746378 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 150
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 157, 0

Conread position: 238-368
Cow position: chr18:53785283-53785156 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 250-706
Cow position: chr18:29763280-29762822 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 38

Conread position: 259-365
Cow position: chr18:54044999-54044892 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 272-710
Cow position: chr18:43200566-43200129 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 107

Conread position: 333-626
Cow position: chr18:17993022-17993322 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 173
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 85, 161

Conread position: 354-626
Cow position: chr18:30198374-30198093 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 193
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 53, 169

Conread position: 360-706
Cow position: chr18:16876930-16876604 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 236
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 156, 54

Conread position: 421-626
Cow position: chr18:2020260-2020469 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 147
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 50, 57

Conread position: 427-708
Cow position: chr18:18897187-18896901 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 192
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 115, 11

Conread position: 478-712
Cow position: chr18:2887437-2887671 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 169
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 38, 32

Conread position: 499-708
Cow position: chr18:42072546-42072760 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 152
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 32, 183

Show alignments to all cow chromosomes.