Cow genome map

Conread name: Ova1-OVRM10106F05

Conread position: 1-160
Cow position: chr19:350224-350387 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 75, 0

Conread position: 1-166
Cow position: chr19:27052710-27052875 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 78, 96

Conread position: 1-285
Cow position: chr19:561446-561731 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 199
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 71, 205

Conread position: 1-363
Cow position: chr19:39688588-39688235 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 85

Conread position: 1-365
Cow position: chr19:32665589-32665216 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 137

Conread position: 1-372
Cow position: chr19:30372341-30371952 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 319

Conread position: 1-384
Cow position: chr19:39546687-39546295 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 246

Conread position: 1-390
Cow position: chr19:31341765-31341382 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 203

Conread position: 1-599
Cow position: chr19:35979323-35978724 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 122

Conread position: 1-611
Cow position: chr19:29209620-29209014 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 168

Conread position: 1-613
Cow position: chr19:4252300-4252910 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 13

Conread position: 1-616
Cow position: chr19:34479-33855 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 192

Conread position: 1-635
Cow position: chr19:4532693-4533339 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 26

Conread position: 2-407
Cow position: chr19:20125677-20125276 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 231

Conread position: 2-507
Cow position: chr19:30755234-30754718 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 334
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 74, 33

Conread position: 2-534
Cow position: chr19:40852374-40852908 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 15

Conread position: 3-168
Cow position: chr19:33873484-33873315 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 72, 0

Conread position: 3-203
Cow position: chr19:28376579-28376376 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 160
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 94, 71

Conread position: 3-293
Cow position: chr19:893556-893847 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 169

Conread position: 3-352
Cow position: chr19:7488370-7488009 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 3-367
Cow position: chr19:15953911-15953558 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 244
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 70, 115

Conread position: 3-372
Cow position: chr19:170685-171067 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 35

Conread position: 3-410
Cow position: chr19:439586-440009 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 3-442
Cow position: chr19:32244741-32244286 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 448

Conread position: 3-446
Cow position: chr19:32193634-32193182 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 272

Conread position: 3-446
Cow position: chr19:32212014-32212462 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 18

Conread position: 3-447
Cow position: chr19:37953-37504 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 265

Conread position: 3-463
Cow position: chr19:772656-772193 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 216

Conread position: 3-463
Cow position: chr19:7342125-7341653 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 194

Conread position: 3-467
Cow position: chr19:43143773-43143294 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 395

Conread position: 3-609
Cow position: chr19:4385538-4384920 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 94

Conread position: 3-609
Cow position: chr19:10672249-10672866 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 437

Conread position: 3-609
Cow position: chr19:33941669-33941059 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 394

Conread position: 3-613
Cow position: chr19:76197-76804 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 15

Conread position: 3-613
Cow position: chr19:39390573-39389966 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 10

Conread position: 3-614
Cow position: chr19:172268-171652 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 443

Conread position: 3-620
Cow position: chr19:204018-203397 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 108

Conread position: 3-626
Cow position: chr19:416710-416090 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 308

Conread position: 3-629
Cow position: chr19:28581599-28582202 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 197

Conread position: 3-629
Cow position: chr19:55078803-55078170 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 385

Conread position: 3-630
Cow position: chr19:40887595-40888212 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 47

Conread position: 3-633
Cow position: chr19:261501-260857 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 22

Conread position: 3-707
Cow position: chr19:32223382-32224075 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 157

Conread position: 13-463
Cow position: chr19:28593324-28592871 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 243

Conread position: 40-463
Cow position: chr19:548407-547973 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 288
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 36, 164

Conread position: 42-484
Cow position: chr19:377858-378313 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 312
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 32, 20

Conread position: 43-613
Cow position: chr19:52152244-52152838 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 393
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 33, 212

Conread position: 47-599
Cow position: chr19:35376572-35376020 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 380
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 9, 114

Conread position: 48-490
Cow position: chr19:685855-685407 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 306
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 36, 105

Conread position: 66-699
Cow position: chr19:42649082-42649709 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 218

Conread position: 71-395
Cow position: chr19:1032093-1031767 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 184

Conread position: 89-412
Cow position: chr19:32183481-32183808 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 207
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 75, 61

Conread position: 95-372
Cow position: chr19:32237896-32238179 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 209
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 69, 221

Conread position: 151-390
Cow position: chr19:350664-350916 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 181
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 11, 162

Conread position: 157-670
Cow position: chr19:36477247-36476742 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 82

Conread position: 163-677
Cow position: chr19:6553278-6552784 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 69

Conread position: 170-603
Cow position: chr19:33873117-33872692 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 108

Conread position: 198-348
Cow position: chr19:25622567-25622718 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 141, 0

Conread position: 208-613
Cow position: chr19:801831-801442 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 140

Conread position: 214-599
Cow position: chr19:544056-544455 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 0

Conread position: 228-630
Cow position: chr19:27053014-27053401 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 270
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 289, 34

Conread position: 272-480
Cow position: chr19:8229275-8229482 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 145
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 132, 8

Conread position: 275-696
Cow position: chr19:561930-562353 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 112

Conread position: 340-667
Cow position: chr19:189198-188880 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 214
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 196, 48

Conread position: 349-700
Cow position: chr19:20125354-20125012 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 238
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 43, 52

Conread position: 361-610
Cow position: chr19:39546366-39546115 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 171
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 46, 26

Conread position: 456-675
Cow position: chr19:35316109-35316325 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 156
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 82, 132

Conread position: 457-613
Cow position: chr19:24748549-24748387 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 54, 58

Conread position: 527-708
Cow position: chr19:8229790-8229975 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 9, 0

Show alignments to all cow chromosomes.