Cow genome map
| Conread name: | Ova1-OVRM10106F05 |
| Conread position: | 1-139 |
| Cow position: | chr20:15947377-15947519 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 1-351 |
| Cow position: | chr20:9953969-9954301 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 154 |
| Conread position: | 1-372 |
| Cow position: | chr20:5484205-5483827 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 14 |
| Conread position: | 1-395 |
| Cow position: | chr20:4799635-4800033 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 306 |
| Conread position: | 1-601 |
| Cow position: | chr20:13758272-13757670 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 376 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 83, 26 |
| Conread position: | 1-603 |
| Cow position: | chr20:18315568-18316179 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 126 |
| Conread position: | 1-613 |
| Cow position: | chr20:10102533-10103151 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 258 |
| Conread position: | 1-626 |
| Cow position: | chr20:3252118-3252748 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 390 |
| Conread position: | 1-649 |
| Cow position: | chr20:29572171-29572829 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 209 |
| Conread position: | 1-707 |
| Cow position: | chr20:22206564-22205838 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 135 |
| Conread position: | 1-708 |
| Cow position: | chr20:28593762-28593033 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 218 |
| Conread position: | 2-614 |
| Cow position: | chr20:2677131-2676526 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 384 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 71, 129 |
| Conread position: | 3-168 |
| Cow position: | chr20:8004211-8004380 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 72, 116 |
| Conread position: | 3-240 |
| Cow position: | chr20:11679096-11679345 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 3-260 |
| Cow position: | chr20:19192114-19192383 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 3-268 |
| Cow position: | chr20:35119588-35119311 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 3-352 |
| Cow position: | chr20:28565582-28565947 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-366 |
| Cow position: | chr20:3270718-3270362 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 94 |
| Conread position: | 3-372 |
| Cow position: | chr20:24614551-24614183 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 98 |
| Conread position: | 3-375 |
| Cow position: | chr20:5560701-5561085 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-384 |
| Cow position: | chr20:10846064-10846454 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 323 |
| Conread position: | 3-393 |
| Cow position: | chr20:15097864-15098258 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 116 |
| Conread position: | 3-448 |
| Cow position: | chr20:25850977-25851433 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 15 |
| Conread position: | 3-603 |
| Cow position: | chr20:5534952-5534353 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 31 |
| Conread position: | 3-603 |
| Cow position: | chr20:13762916-13762317 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 389 |
| Conread position: | 3-603 |
| Cow position: | chr20:21914340-21913743 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 300 |
| Conread position: | 3-604 |
| Cow position: | chr20:30684349-30683743 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 94 |
| Conread position: | 3-609 |
| Cow position: | chr20:23469645-23470261 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 440 |
| Conread position: | 3-613 |
| Cow position: | chr20:21393577-21392970 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 62 |
| Conread position: | 3-613 |
| Cow position: | chr20:23798896-23798269 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 271 |
| Conread position: | 3-620 |
| Cow position: | chr20:27869211-27868586 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 327 |
| Conread position: | 3-625 |
| Cow position: | chr20:8313422-8314034 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 343 |
| Conread position: | 3-627 |
| Cow position: | chr20:28160794-28160146 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 474 |
| Conread position: | 3-682 |
| Cow position: | chr20:28476324-28475674 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 444 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 242, 26 |
| Conread position: | 3-700 |
| Cow position: | chr20:22717681-22718350 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 203 |
| Conread position: | 4-611 |
| Cow position: | chr20:15064782-15064145 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 473 |
| Conread position: | 10-404 |
| Cow position: | chr20:12438754-12439158 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 356 |
| Conread position: | 13-168 |
| Cow position: | chr20:15292018-15291863 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 66, 84 |
| Conread position: | 17-603 |
| Cow position: | chr20:7116469-7117065 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 102 |
| Conread position: | 24-707 |
| Cow position: | chr20:24516859-24516176 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 430 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 52, 102 |
| Conread position: | 31-269 |
| Cow position: | chr20:35119310-35119061 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 46-637 |
| Cow position: | chr20:2791375-2791998 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 393 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 30, 361 |
| Conread position: | 48-613 |
| Cow position: | chr20:19437927-19437334 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 226 |
| Conread position: | 50-623 |
| Cow position: | chr20:8993851-8994418 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 365 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 28, 184 |
| Conread position: | 102-384 |
| Cow position: | chr20:3032840-3032558 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 99 |
| Conread position: | 113-638 |
| Cow position: | chr20:11276396-11276915 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 149 |
| Conread position: | 145-446 |
| Cow position: | chr20:822609-822313 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 217 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 157-598 |
| Cow position: | chr20:5575527-5575114 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 109 |
| Conread position: | 162-629 |
| Cow position: | chr20:8004670-8005136 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 197 |
| Conread position: | 167-446 |
| Cow position: | chr20:31124244-31123961 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 220, 0 |
| Conread position: | 171-405 |
| Cow position: | chr20:29948020-29947786 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 210-597 |
| Cow position: | chr20:15291843-15291460 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 220 |
| Conread position: | 228-609 |
| Cow position: | chr20:35119024-35118650 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 269 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 179, 67 |
| Conread position: | 236-368 |
| Cow position: | chr20:19005860-19005989 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 251-616 |
| Cow position: | chr20:13681330-13681686 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 121 |
| Conread position: | 340-707 |
| Cow position: | chr20:9954582-9954955 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 275 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 168, 29 |
| Conread position: | 366-621 |
| Cow position: | chr20:10846655-10846915 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 8, 31 |
| Conread position: | 476-707 |
| Cow position: | chr20:35974318-35974549 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 51, 65 |
Show alignments to all cow chromosomes.