Cow genome map
| Conread name: | Ova1-OVRM10106F05 |
| Conread position: | 1-220 |
| Cow position: | chr21:4456961-4456734 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 71, 12 |
| Conread position: | 1-362 |
| Cow position: | chr21:34293152-34292781 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 1-367 |
| Cow position: | chr21:9891729-9891370 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-372 |
| Cow position: | chr21:4222552-4222943 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 321 |
| Conread position: | 1-372 |
| Cow position: | chr21:13123868-13124244 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 34 |
| Conread position: | 1-378 |
| Cow position: | chr21:2788856-2789231 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 216 |
| Conread position: | 1-380 |
| Cow position: | chr21:23812011-23811657 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 265 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 75, 166 |
| Conread position: | 1-390 |
| Cow position: | chr21:3426620-3426220 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 340 |
| Conread position: | 1-395 |
| Cow position: | chr21:3615427-3615025 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 208 |
| Conread position: | 1-572 |
| Cow position: | chr21:4183659-4183079 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 131 |
| Conread position: | 1-613 |
| Cow position: | chr21:47939611-47939004 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 37 |
| Conread position: | 1-618 |
| Cow position: | chr21:2529992-2530601 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 112 |
| Conread position: | 1-622 |
| Cow position: | chr21:2716548-2717154 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 214 |
| Conread position: | 1-636 |
| Cow position: | chr21:4076974-4076362 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 34 |
| Conread position: | 1-682 |
| Cow position: | chr21:216442-215756 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 433 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 29, 88 |
| Conread position: | 1-708 |
| Cow position: | chr21:359151-358441 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 75 |
| Conread position: | 2-260 |
| Cow position: | chr21:2541279-2541552 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 2-663 |
| Cow position: | chr21:20744625-20745265 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 16 |
| Conread position: | 3-147 |
| Cow position: | chr21:27282520-27282372 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-349 |
| Cow position: | chr21:30561935-30561577 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-372 |
| Cow position: | chr21:36714765-36714394 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 72, 189 |
| Conread position: | 3-405 |
| Cow position: | chr21:30599787-30600194 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 145 |
| Conread position: | 3-412 |
| Cow position: | chr21:23860914-23860495 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 26 |
| Conread position: | 3-446 |
| Cow position: | chr21:2510784-2510331 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 63 |
| Conread position: | 3-446 |
| Cow position: | chr21:4090782-4090323 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 3-446 |
| Cow position: | chr21:26638332-26638782 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 268 |
| Conread position: | 3-446 |
| Cow position: | chr21:26818888-26819339 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 253 |
| Conread position: | 3-446 |
| Cow position: | chr21:27708895-27708436 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-446 |
| Cow position: | chr21:37045046-37044596 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 243 |
| Conread position: | 3-446 |
| Cow position: | chr21:39425196-39424743 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 270 |
| Conread position: | 3-447 |
| Cow position: | chr21:46915721-46915265 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 257 |
| Conread position: | 3-472 |
| Cow position: | chr21:11453523-11454003 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 467 |
| Conread position: | 3-489 |
| Cow position: | chr21:47948242-47947745 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 243 |
| Conread position: | 3-534 |
| Cow position: | chr21:48116242-48115705 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 117 |
| Conread position: | 3-599 |
| Cow position: | chr21:1292047-1292653 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 35 |
| Conread position: | 3-602 |
| Cow position: | chr21:2769327-2769933 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 247 |
| Conread position: | 3-603 |
| Cow position: | chr21:2883615-2884212 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 168 |
| Conread position: | 3-603 |
| Cow position: | chr21:10566806-10566203 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 49 |
| Conread position: | 3-603 |
| Cow position: | chr21:10850213-10849604 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 443 |
| Conread position: | 3-612 |
| Cow position: | chr21:7267412-7268021 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 9 |
| Conread position: | 3-613 |
| Cow position: | chr21:445257-444650 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 388 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 79, 14 |
| Conread position: | 3-613 |
| Cow position: | chr21:1191181-1190555 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 445 |
| Conread position: | 3-613 |
| Cow position: | chr21:11505720-11505070 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-613 |
| Cow position: | chr21:12055868-12056509 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 28 |
| Conread position: | 3-613 |
| Cow position: | chr21:33251525-33250906 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 435 |
| Conread position: | 3-620 |
| Cow position: | chr21:146056-145434 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 442 |
| Conread position: | 3-626 |
| Cow position: | chr21:35596501-35595890 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 189 |
| Conread position: | 3-708 |
| Cow position: | chr21:33755437-33754723 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 76 |
| Conread position: | 4-446 |
| Cow position: | chr21:17573053-17572604 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 329 |
| Conread position: | 4-620 |
| Cow position: | chr21:3778898-3778280 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 112 |
| Conread position: | 5-626 |
| Cow position: | chr21:34259089-34259702 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 163 |
| Conread position: | 8-622 |
| Cow position: | chr21:4589864-4590465 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 150 |
| Conread position: | 13-616 |
| Cow position: | chr21:31559530-31560138 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 251 |
| Conread position: | 17-611 |
| Cow position: | chr21:2416354-2415746 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 43 |
| Conread position: | 29-256 |
| Cow position: | chr21:27850-27625 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 135, 66 |
| Conread position: | 40-559 |
| Cow position: | chr21:2502023-2501504 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 10 |
| Conread position: | 48-442 |
| Cow position: | chr21:2476424-2476829 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 299 |
| Conread position: | 50-462 |
| Cow position: | chr21:4083732-4083325 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 60 |
| Conread position: | 51-442 |
| Cow position: | chr21:28529459-28529864 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 217 |
| Conread position: | 78-620 |
| Cow position: | chr21:40271764-40272304 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 164 |
| Conread position: | 145-362 |
| Cow position: | chr21:2674658-2674875 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 157-415 |
| Cow position: | chr21:34054945-34055204 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 78, 160 |
| Conread position: | 157-447 |
| Cow position: | chr21:21517170-21516887 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 263, 85 |
| Conread position: | 160-463 |
| Cow position: | chr21:5016064-5016369 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 36, 64 |
| Conread position: | 207-446 |
| Cow position: | chr21:39580639-39580396 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 180, 0 |
| Conread position: | 230-446 |
| Cow position: | chr21:19610010-19609790 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 238-559 |
| Cow position: | chr21:41953069-41952746 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 155 |
| Conread position: | 238-708 |
| Cow position: | chr21:35089588-35089115 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 24 |
| Conread position: | 242-442 |
| Cow position: | chr21:2454600-2454397 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 145, 27 |
| Conread position: | 242-612 |
| Cow position: | chr21:29086374-29086024 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 273, 131 |
| Conread position: | 251-613 |
| Cow position: | chr21:2541998-2542364 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 119 |
| Conread position: | 286-559 |
| Cow position: | chr21:2521615-2521340 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 80, 113 |
| Conread position: | 421-611 |
| Cow position: | chr21:23809480-23809285 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 421-626 |
| Cow position: | chr21:34292519-34292313 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 50, 57 |
| Conread position: | 422-708 |
| Cow position: | chr21:18820394-18820682 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 221 |
| Conread position: | 428-628 |
| Cow position: | chr21:25286312-25286112 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 105, 7 |
| Conread position: | 434-708 |
| Cow position: | chr21:26616936-26617201 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 249, 103 |
| Conread position: | 457-613 |
| Cow position: | chr21:4455769-4455608 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 54, 60 |
| Conread position: | 570-707 |
| Cow position: | chr21:28874158-28874019 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 43, 0 |
Show alignments to all cow chromosomes.