Cow genome map
| Conread name: | Ova1-OVRM10106F05 |
| Conread position: | 1-222 |
| Cow position: | chr28:24652298-24652065 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 178 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 1-363 |
| Cow position: | chr28:17330519-17330899 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 97 |
| Conread position: | 1-372 |
| Cow position: | chr28:7901361-7900984 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 253 |
| Conread position: | 1-372 |
| Cow position: | chr28:9155273-9155655 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 223 |
| Conread position: | 1-375 |
| Cow position: | chr28:9954143-9953756 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 111 |
| Conread position: | 1-390 |
| Cow position: | chr28:15681894-15681499 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-601 |
| Cow position: | chr28:7817228-7816641 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 166 |
| Conread position: | 1-611 |
| Cow position: | chr28:21359015-21358403 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 95 |
| Conread position: | 1-616 |
| Cow position: | chr28:10619103-10619724 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 96 |
| Conread position: | 1-621 |
| Cow position: | chr28:2083608-2082983 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 1-631 |
| Cow position: | chr28:5812714-5812076 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 369 |
| Conread position: | 1-635 |
| Cow position: | chr28:2591921-2591306 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 203 |
| Conread position: | 1-669 |
| Cow position: | chr28:34648950-34648279 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 14 |
| Conread position: | 1-689 |
| Cow position: | chr28:22828057-22827367 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 65 |
| Conread position: | 2-293 |
| Cow position: | chr28:4380833-4381106 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 162, 63 |
| Conread position: | 3-151 |
| Cow position: | chr28:15035492-15035643 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 3-168 |
| Cow position: | chr28:5114795-5114964 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 3-168 |
| Cow position: | chr28:12410217-12410374 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 3-220 |
| Cow position: | chr28:15377987-15378216 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-222 |
| Cow position: | chr28:1504856-1504629 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 70, 94 |
| Conread position: | 3-225 |
| Cow position: | chr28:2989684-2989911 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 69, 95 |
| Conread position: | 3-346 |
| Cow position: | chr28:7822262-7821915 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 73, 257 |
| Conread position: | 3-364 |
| Cow position: | chr28:1814863-1815235 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 116 |
| Conread position: | 3-434 |
| Cow position: | chr28:15920461-15920901 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 271 |
| Conread position: | 3-442 |
| Cow position: | chr28:14750552-14750097 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 10 |
| Conread position: | 3-446 |
| Cow position: | chr28:1953135-1952689 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 221 |
| Conread position: | 3-446 |
| Cow position: | chr28:13440872-13441331 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 389 |
| Conread position: | 3-446 |
| Cow position: | chr28:15950984-15950527 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 30 |
| Conread position: | 3-534 |
| Cow position: | chr28:17388486-17387951 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 439 |
| Conread position: | 3-541 |
| Cow position: | chr28:24587438-24586891 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 270 |
| Conread position: | 3-597 |
| Cow position: | chr28:17667509-17668110 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 132 |
| Conread position: | 3-602 |
| Cow position: | chr28:29819573-29818970 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 392 |
| Conread position: | 3-603 |
| Cow position: | chr28:782400-781792 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 143 |
| Conread position: | 3-603 |
| Cow position: | chr28:5565867-5565257 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 440 |
| Conread position: | 3-603 |
| Cow position: | chr28:10581981-10582585 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 116 |
| Conread position: | 3-603 |
| Cow position: | chr28:12150315-12149726 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 93 |
| Conread position: | 3-603 |
| Cow position: | chr28:13459974-13459369 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 278 |
| Conread position: | 3-609 |
| Cow position: | chr28:8378569-8377953 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 437 |
| Conread position: | 3-613 |
| Cow position: | chr28:1387390-1388004 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 213 |
| Conread position: | 3-613 |
| Cow position: | chr28:3192786-3193389 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 233 |
| Conread position: | 3-613 |
| Cow position: | chr28:26426269-26426874 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 320 |
| Conread position: | 3-613 |
| Cow position: | chr28:32792375-32792990 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 436 |
| Conread position: | 3-614 |
| Cow position: | chr28:8721444-8722078 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 126 |
| Conread position: | 3-614 |
| Cow position: | chr28:22261146-22261761 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 439 |
| Conread position: | 3-631 |
| Cow position: | chr28:18520456-18521098 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 439 |
| Conread position: | 4-534 |
| Cow position: | chr28:7001992-7001472 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 334 |
| Conread position: | 4-637 |
| Cow position: | chr28:14705668-14706303 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 414 |
| Conread position: | 11-222 |
| Cow position: | chr28:5751880-5752103 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 65, 5 |
| Conread position: | 15-405 |
| Cow position: | chr28:34593832-34593434 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 82 |
| Conread position: | 15-603 |
| Cow position: | chr28:1168174-1168768 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 424 |
| Conread position: | 29-463 |
| Cow position: | chr28:6780351-6780798 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 230 |
| Conread position: | 29-463 |
| Cow position: | chr28:10623545-10623989 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 43, 180 |
| Conread position: | 39-613 |
| Cow position: | chr28:5796784-5796204 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 74 |
| Conread position: | 47-683 |
| Cow position: | chr28:18089046-18089687 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 32 |
| Conread position: | 71-613 |
| Cow position: | chr28:21325724-21325170 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 80 |
| Conread position: | 73-603 |
| Cow position: | chr28:13522660-13522134 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 322 |
| Conread position: | 114-630 |
| Cow position: | chr28:15585280-15584771 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 331 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 50, 79 |
| Conread position: | 115-416 |
| Cow position: | chr28:3773947-3774259 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 31, 169 |
| Conread position: | 129-708 |
| Cow position: | chr28:26007904-26007337 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 68 |
| Conread position: | 157-609 |
| Cow position: | chr28:18181516-18181950 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 120, 77 |
| Conread position: | 159-603 |
| Cow position: | chr28:5115242-5115676 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 171 |
| Conread position: | 166-628 |
| Cow position: | chr28:6657514-6657967 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 315 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 160, 5 |
| Conread position: | 197-609 |
| Cow position: | chr28:7790440-7790844 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 83 |
| Conread position: | 201-442 |
| Cow position: | chr28:489285-489040 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 186, 0 |
| Conread position: | 211-603 |
| Cow position: | chr28:33252129-33251715 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 281 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 202, 251 |
| Conread position: | 214-352 |
| Cow position: | chr28:9137246-9137384 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 214-522 |
| Cow position: | chr28:7740037-7739736 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 44, 217 |
| Conread position: | 214-603 |
| Cow position: | chr28:5752378-5752764 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 210 |
| Conread position: | 214-611 |
| Cow position: | chr28:2990184-2990582 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 35 |
| Conread position: | 219-601 |
| Cow position: | chr28:1504418-1504038 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 188 |
| Conread position: | 228-620 |
| Cow position: | chr28:15378246-15378639 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 271 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 294, 202 |
| Conread position: | 230-613 |
| Cow position: | chr28:24667380-24666995 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 157 |
| Conread position: | 232-629 |
| Cow position: | chr28:15035652-15036044 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 271 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 291, 198 |
| Conread position: | 242-613 |
| Cow position: | chr28:28973471-28973833 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 19, 123 |
| Conread position: | 254-638 |
| Cow position: | chr28:5936762-5936388 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 268, 91 |
| Conread position: | 393-708 |
| Cow position: | chr28:25785509-25785208 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 33, 123 |
| Conread position: | 434-702 |
| Cow position: | chr28:13721531-13721256 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 458-682 |
| Cow position: | chr28:8043959-8044178 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 139, 41 |
| Conread position: | 527-710 |
| Cow position: | chr28:22812362-22812182 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 541-707 |
| Cow position: | chr28:28875226-28875390 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 71, 35 |
Show alignments to all cow chromosomes.