Cow genome map

Conread name: Ova1-OVRM10106F05

Conread position: 1-263
Cow position: chr29:21427082-21427355 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 193
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 71, 262

Conread position: 1-263
Cow position: chr29:34608979-34609246 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 184
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 71, 166

Conread position: 1-376
Cow position: chr29:14013443-14013058 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 252
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 83, 15

Conread position: 1-376
Cow position: chr29:14072968-14073355 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 253
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 83, 15

Conread position: 1-390
Cow position: chr29:35196645-35196259 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 131

Conread position: 1-436
Cow position: chr29:12796501-12796933 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 34

Conread position: 1-530
Cow position: chr29:19893735-19893212 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 334
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 91, 12

Conread position: 1-573
Cow position: chr29:21543392-21543964 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 266

Conread position: 1-626
Cow position: chr29:10848136-10848758 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 226

Conread position: 1-626
Cow position: chr29:16770101-16769493 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 96

Conread position: 1-631
Cow position: chr29:11049253-11048623 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 28

Conread position: 1-635
Cow position: chr29:15950209-15950843 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 211

Conread position: 1-663
Cow position: chr29:104545-103883 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 13

Conread position: 1-694
Cow position: chr29:32640751-32640075 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 210

Conread position: 1-706
Cow position: chr29:30811504-30810818 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 116

Conread position: 2-636
Cow position: chr29:2750434-2751054 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 11

Conread position: 3-222
Cow position: chr29:17662894-17662661 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 171
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 69, 0

Conread position: 3-257
Cow position: chr29:31181094-31180828 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 186
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 69, 0

Conread position: 3-263
Cow position: chr29:13853053-13853321 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 197
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 95, 128

Conread position: 3-350
Cow position: chr29:7840766-7840410 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 10

Conread position: 3-383
Cow position: chr29:43366029-43366412 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 44

Conread position: 3-432
Cow position: chr29:31121776-31121335 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 214

Conread position: 3-446
Cow position: chr29:15894880-15895334 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 360

Conread position: 3-446
Cow position: chr29:15969180-15969629 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 306
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 73, 140

Conread position: 3-446
Cow position: chr29:16109698-16109240 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 37

Conread position: 3-446
Cow position: chr29:28060694-28061154 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 3-463
Cow position: chr29:610642-611118 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 63

Conread position: 3-534
Cow position: chr29:23975810-23975269 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 60

Conread position: 3-588
Cow position: chr29:2841398-2841976 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 435

Conread position: 3-597
Cow position: chr29:20251130-20250527 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 439

Conread position: 3-598
Cow position: chr29:2689872-2689289 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 281

Conread position: 3-603
Cow position: chr29:2099815-2099208 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 286

Conread position: 3-603
Cow position: chr29:10823985-10824595 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 116

Conread position: 3-603
Cow position: chr29:26164852-26165456 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 293

Conread position: 3-603
Cow position: chr29:39079735-39080345 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 439

Conread position: 3-603
Cow position: chr29:45459685-45459086 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 51

Conread position: 3-606
Cow position: chr29:25932574-25933188 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 92

Conread position: 3-609
Cow position: chr29:7431245-7431860 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 439

Conread position: 3-613
Cow position: chr29:16022500-16021879 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 143

Conread position: 3-613
Cow position: chr29:21246540-21245923 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 433

Conread position: 3-613
Cow position: chr29:27250364-27251013 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 267

Conread position: 3-613
Cow position: chr29:35296845-35296220 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 200

Conread position: 3-613
Cow position: chr29:43322530-43321900 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 479

Conread position: 3-616
Cow position: chr29:19623277-19623895 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 51

Conread position: 3-618
Cow position: chr29:27040793-27041400 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 378

Conread position: 3-622
Cow position: chr29:19653075-19652451 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 44

Conread position: 3-626
Cow position: chr29:6266523-6267155 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 234

Conread position: 3-637
Cow position: chr29:10648281-10648909 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 94

Conread position: 4-383
Cow position: chr29:34799840-34800223 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 220

Conread position: 4-446
Cow position: chr29:32316010-32315554 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 270

Conread position: 4-603
Cow position: chr29:5957572-5956952 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 430

Conread position: 10-585
Cow position: chr29:32539774-32539191 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 259

Conread position: 13-534
Cow position: chr29:48516-49040 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 420

Conread position: 13-603
Cow position: chr29:40503018-40503617 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 106

Conread position: 15-599
Cow position: chr29:4635008-4635577 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 366
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 59, 202

Conread position: 44-362
Cow position: chr29:1715175-1714860 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 215
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 70, 65

Conread position: 46-534
Cow position: chr29:38226929-38226430 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 163

Conread position: 48-613
Cow position: chr29:13578344-13577747 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 399
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 28, 189

Conread position: 71-700
Cow position: chr29:803425-804050 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 117

Conread position: 97-405
Cow position: chr29:9643851-9644164 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 103-707
Cow position: chr29:32891078-32890476 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 322

Conread position: 115-468
Cow position: chr29:10844137-10843785 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 224
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 31, 155

Conread position: 160-443
Cow position: chr29:14368749-14368461 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 196
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 179, 0

Conread position: 160-613
Cow position: chr29:45587496-45587950 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 64

Conread position: 169-368
Cow position: chr29:2468147-2468346 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 173-662
Cow position: chr29:34751904-34752370 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 342, 87

Conread position: 238-613
Cow position: chr29:21431617-21432001 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 281

Conread position: 252-601
Cow position: chr29:8663987-8663639 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 135

Conread position: 272-613
Cow position: chr29:42650053-42649712 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 230
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 262, 137

Conread position: 272-613
Cow position: chr29:42801913-42801572 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 231
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 262, 137

Conread position: 277-558
Cow position: chr29:131279-131009 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 200
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 77, 152

Conread position: 340-708
Cow position: chr29:45464149-45464521 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 48

Conread position: 388-705
Cow position: chr29:1714701-1714380 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 219
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 58, 42

Conread position: 473-642
Cow position: chr29:5184939-5184764 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 43, 37

Conread position: 494-699
Cow position: chr29:6470977-6470768 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 99

Show alignments to all cow chromosomes.