Cow genome map

Conread name: Ova1-OVRM10106F05

Conread position: 1-172
Cow position: chr4:11618552-11618380 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 137
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 163, 0

Conread position: 1-253
Cow position: chr4:66179293-66179554 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 197
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 71, 251

Conread position: 1-345
Cow position: chr4:1497059-1497414 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 236
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 77, 26

Conread position: 1-390
Cow position: chr4:47717911-47718296 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 168

Conread position: 1-445
Cow position: chr4:10408476-10407995 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 277

Conread position: 1-454
Cow position: chr4:1464231-1464686 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 155

Conread position: 1-609
Cow position: chr4:4905847-4905233 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 16

Conread position: 1-610
Cow position: chr4:21338297-21338910 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 97

Conread position: 1-611
Cow position: chr4:40824550-40825174 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 394
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 71, 412

Conread position: 1-613
Cow position: chr4:46663888-46663272 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 23

Conread position: 1-613
Cow position: chr4:51044196-51044806 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 102

Conread position: 2-599
Cow position: chr4:8598454-8599033 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 74

Conread position: 2-626
Cow position: chr4:66925695-66925076 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 27

Conread position: 3-212
Cow position: chr4:27333137-27332926 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 147
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 62, 167

Conread position: 3-222
Cow position: chr4:12607812-12608039 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 164
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 69, 11

Conread position: 3-263
Cow position: chr4:18424827-18425097 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 195
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 73, 0

Conread position: 3-306
Cow position: chr4:32211860-32211544 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 220
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 73, 0

Conread position: 3-375
Cow position: chr4:17926562-17926945 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 35

Conread position: 3-383
Cow position: chr4:31669007-31668618 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 188

Conread position: 3-398
Cow position: chr4:12241526-12241934 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 0

Conread position: 3-415
Cow position: chr4:6268935-6269352 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 271

Conread position: 3-425
Cow position: chr4:3830172-3829758 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 263
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 72, 47

Conread position: 3-443
Cow position: chr4:528686-528232 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 3-443
Cow position: chr4:13547721-13547261 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 3-443
Cow position: chr4:47764477-47764933 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 3-446
Cow position: chr4:101236-101694 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 358

Conread position: 3-446
Cow position: chr4:602687-602231 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 3-446
Cow position: chr4:3125473-3125015 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 15

Conread position: 3-446
Cow position: chr4:5879863-5879420 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 38

Conread position: 3-446
Cow position: chr4:16056297-16055828 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 3-446
Cow position: chr4:23114483-23114941 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 3-446
Cow position: chr4:65223841-65224300 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 3-463
Cow position: chr4:158208-157746 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 150

Conread position: 3-534
Cow position: chr4:29532021-29532556 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 439

Conread position: 3-595
Cow position: chr4:6490655-6491253 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 437

Conread position: 3-597
Cow position: chr4:43880802-43880201 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 119

Conread position: 3-603
Cow position: chr4:355603-354999 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 83

Conread position: 3-603
Cow position: chr4:1049926-1050539 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 120

Conread position: 3-603
Cow position: chr4:3961285-3960680 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 282

Conread position: 3-603
Cow position: chr4:13492269-13491657 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 442

Conread position: 3-603
Cow position: chr4:18516589-18515973 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 116

Conread position: 3-603
Cow position: chr4:36896067-36895457 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 439

Conread position: 3-603
Cow position: chr4:45049605-45050212 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 436

Conread position: 3-603
Cow position: chr4:48026090-48025489 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 35

Conread position: 3-613
Cow position: chr4:1930930-1931552 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 107

Conread position: 3-613
Cow position: chr4:28830734-28830121 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 229

Conread position: 3-613
Cow position: chr4:30307759-30308392 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 258

Conread position: 3-620
Cow position: chr4:43319943-43320571 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 439

Conread position: 3-620
Cow position: chr4:44724776-44724157 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 416

Conread position: 3-629
Cow position: chr4:24445508-24446136 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 26

Conread position: 3-629
Cow position: chr4:33493505-33492873 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 440

Conread position: 4-408
Cow position: chr4:54190548-54190155 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 245

Conread position: 4-603
Cow position: chr4:25599927-25600516 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 34

Conread position: 4-603
Cow position: chr4:41331133-41330524 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 118

Conread position: 5-194
Cow position: chr4:26887154-26887353 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 151
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 94, 0

Conread position: 10-613
Cow position: chr4:16359569-16358978 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 87

Conread position: 39-612
Cow position: chr4:1371358-1371909 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 192

Conread position: 40-605
Cow position: chr4:34185211-34185773 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 57

Conread position: 41-706
Cow position: chr4:58883027-58883690 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 218

Conread position: 46-708
Cow position: chr4:54955611-54954934 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 376, 508

Conread position: 47-354
Cow position: chr4:27442739-27442429 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 221
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 32, 225

Conread position: 51-618
Cow position: chr4:22471831-22471299 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 357
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 24, 150

Conread position: 59-401
Cow position: chr4:6449254-6449604 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 246
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 17, 68

Conread position: 80-446
Cow position: chr4:9311851-9311472 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 95-385
Cow position: chr4:60265189-60265486 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 206
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 50, 176

Conread position: 101-673
Cow position: chr4:21359235-21358681 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 12

Conread position: 113-614
Cow position: chr4:60630673-60631162 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 319
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 29, 186

Conread position: 113-614
Cow position: chr4:60673480-60672981 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 327
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 29, 137

Conread position: 157-603
Cow position: chr4:46712814-46713248 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 367, 128

Conread position: 161-375
Cow position: chr4:11617968-11617747 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 158
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 74, 0

Conread position: 161-603
Cow position: chr4:33073861-33074296 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 186

Conread position: 163-446
Cow position: chr4:41954315-41954029 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 112

Conread position: 163-619
Cow position: chr4:41118650-41118197 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 243

Conread position: 163-690
Cow position: chr4:47517506-47516967 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 347
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 85, 44

Conread position: 170-596
Cow position: chr4:3358239-3357820 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 261

Conread position: 170-603
Cow position: chr4:57978931-57978507 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 236

Conread position: 173-610
Cow position: chr4:30283203-30282775 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 273
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 357, 33

Conread position: 218-685
Cow position: chr4:15263489-15263948 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 296
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 54, 60

Conread position: 238-677
Cow position: chr4:15193462-15193034 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 285
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 40, 66

Conread position: 349-712
Cow position: chr4:21564299-21563940 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 231
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 138, 36

Show alignments to all cow chromosomes.