Cow genome map

Conread name: Ova1-OVRM10122D05

Conread position: 1-320
Cow position: chr10:40149478-40149149 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 230
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 39, 251

Conread position: 1-464
Cow position: chr10:19296717-19296238 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 251

Conread position: 1-464
Cow position: chr10:26670352-26670837 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 25

Conread position: 1-483
Cow position: chr10:25004595-25005101 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 255

Conread position: 1-484
Cow position: chr10:21080517-21081018 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 331
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 33, 261

Conread position: 1-484
Cow position: chr10:31044896-31044416 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 336
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 33, 127

Conread position: 1-495
Cow position: chr10:32319121-32319623 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 138

Conread position: 1-500
Cow position: chr10:6541163-6541669 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 357
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 24, 9

Conread position: 1-502
Cow position: chr10:55026531-55027039 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 340
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 38, 83

Conread position: 1-519
Cow position: chr10:32699348-32699888 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 42

Conread position: 1-541
Cow position: chr10:38842848-38843408 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 255

Conread position: 1-544
Cow position: chr10:17435964-17436517 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 367
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 33, 124

Conread position: 1-546
Cow position: chr10:21426618-21426054 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 250

Conread position: 1-546
Cow position: chr10:22104164-22104731 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 16

Conread position: 1-548
Cow position: chr10:1380184-1380749 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 252

Conread position: 1-548
Cow position: chr10:2117761-2117189 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 255

Conread position: 1-548
Cow position: chr10:2847582-2848139 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 243

Conread position: 1-548
Cow position: chr10:3507462-3506888 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 260

Conread position: 1-548
Cow position: chr10:7279421-7278848 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 257

Conread position: 1-548
Cow position: chr10:8292811-8293382 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 255

Conread position: 1-548
Cow position: chr10:8458910-8459479 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 18

Conread position: 1-548
Cow position: chr10:9682487-9681915 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 255

Conread position: 1-548
Cow position: chr10:10584811-10585379 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 255

Conread position: 1-548
Cow position: chr10:14333160-14332588 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 255

Conread position: 1-548
Cow position: chr10:16928839-16929416 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 255

Conread position: 1-548
Cow position: chr10:19141928-19141356 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 255

Conread position: 1-548
Cow position: chr10:19513913-19514482 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 255

Conread position: 1-548
Cow position: chr10:23411727-23412299 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 255

Conread position: 1-548
Cow position: chr10:28031252-28030681 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 254

Conread position: 1-548
Cow position: chr10:30682807-30682240 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 253

Conread position: 1-548
Cow position: chr10:32281695-32282267 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 257

Conread position: 1-548
Cow position: chr10:32364624-32365192 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 258

Conread position: 1-548
Cow position: chr10:37772567-37773132 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 245

Conread position: 1-548
Cow position: chr10:39038367-39037798 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 258

Conread position: 1-548
Cow position: chr10:40566364-40566921 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 254

Conread position: 1-548
Cow position: chr10:40697991-40697425 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 200

Conread position: 1-548
Cow position: chr10:44669978-44669411 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 258

Conread position: 1-548
Cow position: chr10:48170207-48170774 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 250

Conread position: 1-548
Cow position: chr10:50314317-50314877 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 251

Conread position: 1-548
Cow position: chr10:51558081-51558653 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 255

Conread position: 1-548
Cow position: chr10:52826946-52826376 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 258

Conread position: 1-548
Cow position: chr10:58811074-58810528 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 132

Conread position: 1-548
Cow position: chr10:58938970-58938390 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 391
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 32, 269

Conread position: 1-548
Cow position: chr10:60362661-60363229 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 13

Conread position: 1-549
Cow position: chr10:2467195-2466648 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 48

Conread position: 1-549
Cow position: chr10:15620701-15620133 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 23

Conread position: 3-541
Cow position: chr10:39876767-39876200 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 381
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 29, 254

Conread position: 4-364
Cow position: chr10:26617252-26617621 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 246
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 113, 33

Conread position: 5-548
Cow position: chr10:32703448-32704015 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 238

Conread position: 7-548
Cow position: chr10:28528727-28528170 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 35

Conread position: 10-469
Cow position: chr10:33868493-33868010 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 334
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 24, 105

Conread position: 10-497
Cow position: chr10:25633147-25632637 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 248

Conread position: 10-548
Cow position: chr10:278660-278104 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 248

Conread position: 10-548
Cow position: chr10:1663275-1662714 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 246

Conread position: 10-548
Cow position: chr10:11109975-11110522 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 61

Conread position: 10-548
Cow position: chr10:25650728-25650168 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 247

Conread position: 10-548
Cow position: chr10:30688689-30689251 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 248

Conread position: 10-548
Cow position: chr10:32086379-32086935 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 87

Conread position: 10-548
Cow position: chr10:41160107-41160657 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 375
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 24, 249

Conread position: 10-548
Cow position: chr10:44706017-44705457 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 249

Conread position: 17-548
Cow position: chr10:14845961-14846507 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 177

Conread position: 22-500
Cow position: chr10:41386283-41385783 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 340
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 102, 236

Conread position: 23-548
Cow position: chr10:39440879-39441422 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 40

Conread position: 31-548
Cow position: chr10:22344180-22344716 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 225

Conread position: 31-548
Cow position: chr10:58686908-58687435 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 344
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 37, 222

Conread position: 39-548
Cow position: chr10:34665048-34664516 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 50

Conread position: 42-548
Cow position: chr10:21431972-21432497 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 353
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 91, 27

Conread position: 44-548
Cow position: chr10:21489667-21490190 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 207

Conread position: 66-484
Cow position: chr10:2243644-2244079 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 186

Conread position: 67-502
Cow position: chr10:40105562-40106016 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 307
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 64, 49

Conread position: 72-548
Cow position: chr10:20445576-20446062 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 44

Conread position: 91-387
Cow position: chr10:56336317-56336625 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 218
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 41, 157

Conread position: 110-548
Cow position: chr10:4500760-4501196 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 130

Conread position: 141-548
Cow position: chr10:37040848-37041258 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 93

Conread position: 141-548
Cow position: chr10:40375850-40376260 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 93

Conread position: 141-548
Cow position: chr10:64305183-64304773 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 93

Conread position: 152-437
Cow position: chr10:35039861-35040141 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 209
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 44, 16

Conread position: 152-465
Cow position: chr10:27134613-27134308 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 235
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 149, 82

Conread position: 153-438
Cow position: chr10:16552222-16551936 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 220
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 153, 6

Conread position: 153-461
Cow position: chr10:68096474-68096159 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 223
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 153, 82

Conread position: 153-496
Cow position: chr10:52738714-52739058 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 247
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 153, 81

Conread position: 153-548
Cow position: chr10:7895590-7895194 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 49

Conread position: 153-548
Cow position: chr10:21729846-21729450 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 82

Conread position: 153-548
Cow position: chr10:22380574-22380969 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 81

Conread position: 153-548
Cow position: chr10:40400037-40400426 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 280
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 32, 72

Conread position: 154-397
Cow position: chr10:1972713-1972471 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 128, 80

Conread position: 154-548
Cow position: chr10:19708622-19709019 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 272
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 126, 80

Conread position: 155-548
Cow position: chr10:18106425-18106817 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 79

Conread position: 158-440
Cow position: chr10:20397792-20398065 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 193
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 147, 73

Conread position: 158-548
Cow position: chr10:28040703-28040310 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 76

Conread position: 159-548
Cow position: chr10:39210636-39211026 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 75

Conread position: 160-497
Cow position: chr10:10531848-10531509 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 232
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 25, 18

Conread position: 162-548
Cow position: chr10:19491909-19491524 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 72

Conread position: 167-548
Cow position: chr10:5785363-5784984 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 67

Conread position: 167-548
Cow position: chr10:48390885-48390507 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 265
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 139, 67

Conread position: 167-548
Cow position: chr10:57743082-57743460 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 265
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 139, 51

Conread position: 178-548
Cow position: chr10:8219385-8219762 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 268
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 128, 57

Conread position: 178-548
Cow position: chr10:38542837-38542466 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 260
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 144, 57

Conread position: 179-500
Cow position: chr10:43848054-43848366 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 229
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 127, 57

Conread position: 248-548
Cow position: chr10:38450884-38450573 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 216
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 57, 109

Show alignments to all cow chromosomes.