Cow genome map
| Conread name: | Ova1-OVRM10122D05 |
| Conread position: | 1-233 |
| Cow position: | chr16:49171160-49170911 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1-380 |
| Cow position: | chr16:41573333-41573740 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 252 |
| Conread position: | 1-382 |
| Cow position: | chr16:1565756-1565352 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 281 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 33, 254 |
| Conread position: | 1-382 |
| Cow position: | chr16:20968878-20968475 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 33, 256 |
| Conread position: | 1-478 |
| Cow position: | chr16:25742676-25743163 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 89 |
| Conread position: | 1-492 |
| Cow position: | chr16:24811883-24812383 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 16 |
| Conread position: | 1-537 |
| Cow position: | chr16:16031815-16032371 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 243 |
| Conread position: | 1-546 |
| Cow position: | chr16:11633924-11633354 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 255 |
| Conread position: | 1-546 |
| Cow position: | chr16:43895342-43894772 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 255 |
| Conread position: | 1-546 |
| Cow position: | chr16:51040470-51041040 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 235 |
| Conread position: | 1-547 |
| Cow position: | chr16:2408974-2408403 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 254 |
| Conread position: | 1-547 |
| Cow position: | chr16:7466534-7467104 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 255 |
| Conread position: | 1-548 |
| Cow position: | chr16:416816-417387 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 108 |
| Conread position: | 1-548 |
| Cow position: | chr16:3149110-3148544 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 255 |
| Conread position: | 1-548 |
| Cow position: | chr16:3770090-3769519 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 254 |
| Conread position: | 1-548 |
| Cow position: | chr16:4426014-4426583 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 253 |
| Conread position: | 1-548 |
| Cow position: | chr16:7674538-7673969 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 196 |
| Conread position: | 1-548 |
| Cow position: | chr16:10440163-10440731 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 250 |
| Conread position: | 1-548 |
| Cow position: | chr16:15186988-15187560 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 254 |
| Conread position: | 1-548 |
| Cow position: | chr16:15494381-15494950 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 25 |
| Conread position: | 1-548 |
| Cow position: | chr16:18695046-18694480 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 380 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 33, 256 |
| Conread position: | 1-548 |
| Cow position: | chr16:21017479-21018051 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 248 |
| Conread position: | 1-548 |
| Cow position: | chr16:23985231-23985805 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 257 |
| Conread position: | 1-548 |
| Cow position: | chr16:25260042-25260616 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 260 |
| Conread position: | 1-548 |
| Cow position: | chr16:25343897-25344470 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 256 |
| Conread position: | 1-548 |
| Cow position: | chr16:26653596-26654155 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 1-548 |
| Cow position: | chr16:27731461-27730889 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 255 |
| Conread position: | 1-548 |
| Cow position: | chr16:37478940-37478368 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 255 |
| Conread position: | 1-548 |
| Cow position: | chr16:39615172-39615716 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 380 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 130, 40 |
| Conread position: | 1-548 |
| Cow position: | chr16:41033223-41033791 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 212 |
| Conread position: | 1-548 |
| Cow position: | chr16:41684371-41683812 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 23 |
| Conread position: | 1-548 |
| Cow position: | chr16:46102687-46102125 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 144 |
| Conread position: | 1-548 |
| Cow position: | chr16:51086703-51087276 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 257 |
| Conread position: | 1-548 |
| Cow position: | chr16:52526152-52526725 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 254 |
| Conread position: | 2-548 |
| Cow position: | chr16:2725298-2724732 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 253 |
| Conread position: | 2-548 |
| Cow position: | chr16:45817186-45816623 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 20 |
| Conread position: | 3-529 |
| Cow position: | chr16:42117687-42118225 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 16 |
| Conread position: | 4-447 |
| Cow position: | chr16:3031570-3031104 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 312 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 69, 248 |
| Conread position: | 5-544 |
| Cow position: | chr16:43845021-43844473 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 70 |
| Conread position: | 5-547 |
| Cow position: | chr16:48012723-48012187 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 370 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 131, 19 |
| Conread position: | 5-548 |
| Cow position: | chr16:39474752-39475322 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 256 |
| Conread position: | 7-548 |
| Cow position: | chr16:17141332-17141897 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 250 |
| Conread position: | 9-464 |
| Cow position: | chr16:5663723-5664196 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 324 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 60, 31 |
| Conread position: | 9-548 |
| Cow position: | chr16:4462381-4461819 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 245 |
| Conread position: | 10-410 |
| Cow position: | chr16:41161540-41161106 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 297 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 24, 263 |
| Conread position: | 10-528 |
| Cow position: | chr16:24621768-24621225 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 248 |
| Conread position: | 10-547 |
| Cow position: | chr16:34460-34991 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 66 |
| Conread position: | 10-548 |
| Cow position: | chr16:5526176-5525612 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 248 |
| Conread position: | 10-548 |
| Cow position: | chr16:11744470-11745033 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 249 |
| Conread position: | 10-548 |
| Cow position: | chr16:12161348-12160788 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 244 |
| Conread position: | 10-548 |
| Cow position: | chr16:15311212-15311775 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 248 |
| Conread position: | 10-548 |
| Cow position: | chr16:20377391-20377945 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 249 |
| Conread position: | 10-548 |
| Cow position: | chr16:28194370-28193808 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 247 |
| Conread position: | 10-548 |
| Cow position: | chr16:45704862-45704302 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 7 |
| Conread position: | 10-548 |
| Cow position: | chr16:46554353-46554914 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 246 |
| Conread position: | 10-548 |
| Cow position: | chr16:47403313-47403874 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 248 |
| Conread position: | 11-548 |
| Cow position: | chr16:56914297-56913742 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 384 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 16-548 |
| Cow position: | chr16:31425006-31425542 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 76 |
| Conread position: | 22-548 |
| Cow position: | chr16:2394311-2394854 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 237 |
| Conread position: | 22-548 |
| Cow position: | chr16:11007245-11006692 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 236 |
| Conread position: | 23-542 |
| Cow position: | chr16:34207831-34208342 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 342 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 11, 206 |
| Conread position: | 31-548 |
| Cow position: | chr16:10966281-10965754 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 196 |
| Conread position: | 31-548 |
| Cow position: | chr16:14352728-14352190 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 223 |
| Conread position: | 32-497 |
| Cow position: | chr16:16960910-16960422 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 318 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 37, 202 |
| Conread position: | 32-547 |
| Cow position: | chr16:193980-193444 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 173 |
| Conread position: | 50-489 |
| Cow position: | chr16:54175381-54175830 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 318 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 80, 18 |
| Conread position: | 134-549 |
| Cow position: | chr16:9416476-9416085 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 280 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 207, 7 |
| Conread position: | 153-415 |
| Cow position: | chr16:23097068-23096807 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 153, 81 |
| Conread position: | 153-415 |
| Cow position: | chr16:23098437-23098698 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 153, 81 |
| Conread position: | 153-548 |
| Cow position: | chr16:658058-658452 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 277 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 153, 20 |
| Conread position: | 153-548 |
| Cow position: | chr16:11054093-11054483 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 284 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 23, 36 |
| Conread position: | 153-548 |
| Cow position: | chr16:15980281-15979886 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 79 |
| Conread position: | 154-442 |
| Cow position: | chr16:28433996-28433722 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 152, 80 |
| Conread position: | 154-502 |
| Cow position: | chr16:45755514-45755166 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 152, 80 |
| Conread position: | 154-548 |
| Cow position: | chr16:42080511-42080122 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 275 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 152, 80 |
| Conread position: | 158-547 |
| Cow position: | chr16:48496037-48495644 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 76 |
| Conread position: | 160-529 |
| Cow position: | chr16:44668702-44668341 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 23, 71 |
| Conread position: | 160-548 |
| Cow position: | chr16:15569874-15570261 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 29 |
| Conread position: | 167-548 |
| Cow position: | chr16:54286664-54287037 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 168, 67 |
| Conread position: | 201-500 |
| Cow position: | chr16:19170860-19170563 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 246-432 |
| Cow position: | chr16:12175895-12175705 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 93, 163 |
| Conread position: | 248-548 |
| Cow position: | chr16:30052131-30052441 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 56, 64 |
| Conread position: | 255-484 |
| Cow position: | chr16:7354956-7354733 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 85 |
Show alignments to all cow chromosomes.