Cow genome map
| Conread name: | Ova1-OVRM10122D05 |
| Conread position: | 1-366 |
| Cow position: | chr17:4297394-4297773 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 277 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 37, 251 |
| Conread position: | 1-493 |
| Cow position: | chr17:5999001-5998494 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 42 |
| Conread position: | 1-497 |
| Cow position: | chr17:240778-241294 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 100 |
| Conread position: | 1-500 |
| Cow position: | chr17:10799455-10798945 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 195 |
| Conread position: | 1-506 |
| Cow position: | chr17:2582769-2583295 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 57 |
| Conread position: | 1-519 |
| Cow position: | chr17:36816163-36816682 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 18 |
| Conread position: | 1-539 |
| Cow position: | chr17:2178351-2178908 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 369 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 33, 261 |
| Conread position: | 1-544 |
| Cow position: | chr17:732004-731443 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 257 |
| Conread position: | 1-544 |
| Cow position: | chr17:38828402-38828956 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 380 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 39, 9 |
| Conread position: | 1-546 |
| Cow position: | chr17:15373892-15374455 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 384 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 30, 255 |
| Conread position: | 1-547 |
| Cow position: | chr17:6080994-6081556 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 377 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 61, 251 |
| Conread position: | 1-548 |
| Cow position: | chr17:1655266-1654710 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 86 |
| Conread position: | 1-548 |
| Cow position: | chr17:1882743-1883300 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 256 |
| Conread position: | 1-548 |
| Cow position: | chr17:2176465-2177032 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 256 |
| Conread position: | 1-548 |
| Cow position: | chr17:2264674-2265241 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 258 |
| Conread position: | 1-548 |
| Cow position: | chr17:3314587-3315133 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 257 |
| Conread position: | 1-548 |
| Cow position: | chr17:8222176-8222757 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 22 |
| Conread position: | 1-548 |
| Cow position: | chr17:9752279-9752842 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 43 |
| Conread position: | 1-548 |
| Cow position: | chr17:13930379-13930950 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 1-548 |
| Cow position: | chr17:14899209-14899774 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 7 |
| Conread position: | 1-548 |
| Cow position: | chr17:15327767-15328333 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 41 |
| Conread position: | 1-548 |
| Cow position: | chr17:16855609-16855045 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 101 |
| Conread position: | 1-548 |
| Cow position: | chr17:17132835-17133396 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 87 |
| Conread position: | 1-548 |
| Cow position: | chr17:18100595-18100022 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 254 |
| Conread position: | 1-548 |
| Cow position: | chr17:20094678-20094105 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 255 |
| Conread position: | 1-548 |
| Cow position: | chr17:23510959-23510387 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 399 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 33, 87 |
| Conread position: | 1-548 |
| Cow position: | chr17:24027508-24026931 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 45 |
| Conread position: | 1-548 |
| Cow position: | chr17:25738786-25739348 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 9 |
| Conread position: | 1-548 |
| Cow position: | chr17:33935359-33934788 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 256 |
| Conread position: | 1-548 |
| Cow position: | chr17:40810230-40810803 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 236 |
| Conread position: | 3-499 |
| Cow position: | chr17:15191643-15191141 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 43 |
| Conread position: | 3-548 |
| Cow position: | chr17:33290465-33289910 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 38 |
| Conread position: | 4-548 |
| Cow position: | chr17:20694684-20695259 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 190 |
| Conread position: | 10-547 |
| Cow position: | chr17:15140848-15140288 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 118 |
| Conread position: | 10-548 |
| Cow position: | chr17:22249761-22249200 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 248 |
| Conread position: | 10-548 |
| Cow position: | chr17:29075835-29075303 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 372 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 22, 245 |
| Conread position: | 10-548 |
| Cow position: | chr17:29825472-29824909 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 248 |
| Conread position: | 14-528 |
| Cow position: | chr17:2245557-2245027 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 357 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 116, 240 |
| Conread position: | 20-547 |
| Cow position: | chr17:34567300-34567843 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 379 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 14, 52 |
| Conread position: | 23-495 |
| Cow position: | chr17:36000197-35999710 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 326 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 32-499 |
| Cow position: | chr17:17382604-17383088 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 337 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 22, 51 |
| Conread position: | 43-548 |
| Cow position: | chr17:183672-184199 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 212 |
| Conread position: | 44-548 |
| Cow position: | chr17:21067125-21066618 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 11 |
| Conread position: | 64-548 |
| Cow position: | chr17:33791657-33792135 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 336 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 72, 188 |
| Conread position: | 93-548 |
| Cow position: | chr17:19406712-19406250 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 132-548 |
| Cow position: | chr17:29949851-29950267 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 101 |
| Conread position: | 141-548 |
| Cow position: | chr17:138255-138660 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 93 |
| Conread position: | 141-548 |
| Cow position: | chr17:1784904-1784489 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 281 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 13, 97 |
| Conread position: | 153-411 |
| Cow position: | chr17:12674790-12674533 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 153, 81 |
| Conread position: | 153-438 |
| Cow position: | chr17:5546724-5546439 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 49, 83 |
| Conread position: | 153-537 |
| Cow position: | chr17:1457724-1457342 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 153, 53 |
| Conread position: | 153-539 |
| Cow position: | chr17:41479533-41479157 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 71, 11 |
| Conread position: | 153-548 |
| Cow position: | chr17:27977777-27978163 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 82 |
| Conread position: | 155-546 |
| Cow position: | chr17:4084731-4085117 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 277 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 146, 50 |
| Conread position: | 159-543 |
| Cow position: | chr17:15719005-15719389 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 75 |
| Conread position: | 159-548 |
| Cow position: | chr17:15709331-15708941 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 75 |
| Conread position: | 160-447 |
| Cow position: | chr17:9745618-9745902 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 146, 74 |
| Conread position: | 160-541 |
| Cow position: | chr17:37918-38283 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 206, 76 |
| Conread position: | 161-548 |
| Cow position: | chr17:18722214-18721826 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 54 |
| Conread position: | 168-548 |
| Cow position: | chr17:14029675-14029294 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 67 |
| Conread position: | 183-548 |
| Cow position: | chr17:12133316-12132953 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 264 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 123, 52 |
| Conread position: | 188-548 |
| Cow position: | chr17:16118755-16118407 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 173, 46 |
| Conread position: | 218-497 |
| Cow position: | chr17:44608238-44607964 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 33, 12 |
| Conread position: | 249-546 |
| Cow position: | chr17:31092981-31092686 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 250-544 |
| Cow position: | chr17:41918934-41919234 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 109 |
| Conread position: | 258-496 |
| Cow position: | chr17:8495999-8495764 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 48, 64 |
Show alignments to all cow chromosomes.