Cow genome map

Conread name: Ova1-OVRM10122D05

Conread position: 1-398
Cow position: chr6:225327-224915 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 289
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 39, 13

Conread position: 1-507
Cow position: chr6:43186680-43187215 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 111

Conread position: 1-527
Cow position: chr6:11722616-11722073 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 87

Conread position: 1-528
Cow position: chr6:19329360-19328829 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 369
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 35, 49

Conread position: 1-547
Cow position: chr6:35723982-35724533 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 12

Conread position: 1-547
Cow position: chr6:50570780-50571340 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 165

Conread position: 1-548
Cow position: chr6:48994-48422 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 248

Conread position: 1-548
Cow position: chr6:478126-478700 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 258

Conread position: 1-548
Cow position: chr6:916623-917193 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 255

Conread position: 1-548
Cow position: chr6:1819219-1818650 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 253

Conread position: 1-548
Cow position: chr6:3272901-3272331 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 97

Conread position: 1-548
Cow position: chr6:3485820-3485269 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 257

Conread position: 1-548
Cow position: chr6:3886928-3886355 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 255

Conread position: 1-548
Cow position: chr6:6120414-6119836 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 270

Conread position: 1-548
Cow position: chr6:6162716-6163280 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 105

Conread position: 1-548
Cow position: chr6:6720566-6721120 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 67

Conread position: 1-548
Cow position: chr6:8536715-8536146 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 253

Conread position: 1-548
Cow position: chr6:12646815-12647378 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 378
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 39, 258

Conread position: 1-548
Cow position: chr6:15138588-15138023 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 255

Conread position: 1-548
Cow position: chr6:16592547-16593110 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 106

Conread position: 1-548
Cow position: chr6:16767256-16766690 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 255

Conread position: 1-548
Cow position: chr6:17120966-17121536 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 255

Conread position: 1-548
Cow position: chr6:20450546-20451110 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 255

Conread position: 1-548
Cow position: chr6:21975531-21976101 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 255

Conread position: 1-548
Cow position: chr6:24241869-24242439 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 255

Conread position: 1-548
Cow position: chr6:33465544-33466108 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 255

Conread position: 1-548
Cow position: chr6:34493256-34493825 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 106

Conread position: 1-548
Cow position: chr6:34504943-34504371 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 106

Conread position: 1-548
Cow position: chr6:36530865-36531423 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 30

Conread position: 1-548
Cow position: chr6:39331952-39331381 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 258

Conread position: 1-548
Cow position: chr6:39999878-39999307 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 254

Conread position: 1-548
Cow position: chr6:40864451-40863879 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 24

Conread position: 1-548
Cow position: chr6:40974764-40975336 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 258

Conread position: 1-548
Cow position: chr6:41191903-41192476 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 253

Conread position: 1-548
Cow position: chr6:41231067-41231638 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 243

Conread position: 1-548
Cow position: chr6:41414732-41414195 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 162

Conread position: 1-548
Cow position: chr6:42266314-42266888 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 260

Conread position: 1-548
Cow position: chr6:47040620-47040059 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 244

Conread position: 1-548
Cow position: chr6:51717124-51717705 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 258

Conread position: 1-548
Cow position: chr6:51732660-51733232 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 255

Conread position: 1-548
Cow position: chr6:52696218-52696781 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 382
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 33, 245

Conread position: 1-548
Cow position: chr6:55539691-55539121 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 238

Conread position: 1-548
Cow position: chr6:60875876-60876446 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 255

Conread position: 1-548
Cow position: chr6:65867365-65867934 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 84

Conread position: 2-546
Cow position: chr6:10235788-10236344 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 56

Conread position: 2-548
Cow position: chr6:6165239-6165795 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 17

Conread position: 2-548
Cow position: chr6:9840560-9839985 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 394
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 61, 23

Conread position: 3-226
Cow position: chr6:27941317-27941553 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 166
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 28, 0

Conread position: 3-499
Cow position: chr6:43778106-43778620 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 46

Conread position: 5-548
Cow position: chr6:37385735-37386298 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 254

Conread position: 8-410
Cow position: chr6:67266858-67267276 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 288
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 58, 32

Conread position: 10-434
Cow position: chr6:35967879-35967432 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 309
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 24, 248

Conread position: 10-526
Cow position: chr6:51867582-51868123 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 248

Conread position: 10-544
Cow position: chr6:37387169-37387724 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 247

Conread position: 10-548
Cow position: chr6:11019244-11019807 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 248

Conread position: 10-548
Cow position: chr6:11870344-11869784 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 216

Conread position: 10-548
Cow position: chr6:12663726-12663165 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 246

Conread position: 10-548
Cow position: chr6:16050703-16050142 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 248

Conread position: 10-548
Cow position: chr6:17595698-17595135 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 248

Conread position: 10-548
Cow position: chr6:22738110-22737556 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 238

Conread position: 10-548
Cow position: chr6:25791111-25790549 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 95

Conread position: 10-548
Cow position: chr6:26772534-26771971 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 221

Conread position: 10-548
Cow position: chr6:38874071-38873511 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 84

Conread position: 10-548
Cow position: chr6:60378750-60379313 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 248

Conread position: 11-548
Cow position: chr6:41407994-41408555 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 247

Conread position: 17-548
Cow position: chr6:43790980-43790426 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 31

Conread position: 23-505
Cow position: chr6:4904373-4903878 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 27

Conread position: 24-546
Cow position: chr6:38989194-38988664 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 357
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 10, 218

Conread position: 31-490
Cow position: chr6:61179604-61179141 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 218

Conread position: 31-548
Cow position: chr6:3151829-3152368 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 498

Conread position: 31-548
Cow position: chr6:17048979-17049523 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 225

Conread position: 41-548
Cow position: chr6:30270283-30269753 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 213

Conread position: 46-548
Cow position: chr6:50112714-50113202 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 335
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 22, 54

Conread position: 53-500
Cow position: chr6:57472590-57473041 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 304
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 107, 196

Conread position: 62-502
Cow position: chr6:6474792-6474343 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 304
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 71, 190

Conread position: 153-543
Cow position: chr6:1734937-1735310 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 257
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 15, 0

Conread position: 153-548
Cow position: chr6:7138586-7138190 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 81

Conread position: 153-548
Cow position: chr6:11289701-11289316 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 15

Conread position: 153-548
Cow position: chr6:27341356-27341751 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 96

Conread position: 153-548
Cow position: chr6:33950395-33950010 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 272
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 152, 82

Conread position: 154-548
Cow position: chr6:47380433-47380816 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 272
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 152, 80

Conread position: 155-548
Cow position: chr6:27172586-27172979 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 79

Conread position: 159-399
Cow position: chr6:21711321-21711560 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 170
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 147, 75

Conread position: 159-499
Cow position: chr6:31010049-31009707 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 242
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 18, 77

Conread position: 159-548
Cow position: chr6:39847675-39848068 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 277
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 117, 78

Conread position: 170-548
Cow position: chr6:14851975-14851596 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 260
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 136, 65

Conread position: 175-462
Cow position: chr6:66838904-66839197 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 216
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 10, 58

Conread position: 180-548
Cow position: chr6:15276459-15276090 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 53

Conread position: 183-548
Cow position: chr6:40550914-40550550 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 51

Conread position: 191-548
Cow position: chr6:49165807-49165452 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 42

Conread position: 201-514
Cow position: chr6:8279958-8279650 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 221
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 99, 34

Conread position: 247-440
Cow position: chr6:38672073-38672267 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 149
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 59, 69

Conread position: 248-548
Cow position: chr6:55592896-55593220 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 226
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 58, 83

Conread position: 249-548
Cow position: chr6:10571053-10570745 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 218
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 57, 73

Conread position: 250-474
Cow position: chr6:66548316-66548545 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 165
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 61, 106

Conread position: 259-549
Cow position: chr6:41050849-41051146 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 204
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 47, 54

Show alignments to all cow chromosomes.