Cow genome map
| Conread name: | Ova1-OVRM10122D05 |
| Conread position: | 1-233 |
| Cow position: | chr9:20314719-20314965 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-304 |
| Cow position: | chr9:1741345-1741041 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 39, 243 |
| Conread position: | 1-420 |
| Cow position: | chr9:4719066-4719493 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 194 |
| Conread position: | 1-457 |
| Cow position: | chr9:16516270-16516740 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 98 |
| Conread position: | 1-473 |
| Cow position: | chr9:3412408-3411916 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 332 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 38, 255 |
| Conread position: | 1-497 |
| Cow position: | chr9:61238432-61237924 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 243 |
| Conread position: | 1-545 |
| Cow position: | chr9:37067354-37067922 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 256 |
| Conread position: | 1-546 |
| Cow position: | chr9:3757324-3756754 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 255 |
| Conread position: | 1-547 |
| Cow position: | chr9:6978738-6979280 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 89 |
| Conread position: | 1-548 |
| Cow position: | chr9:2865046-2864486 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 379 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 1-548 |
| Cow position: | chr9:3960638-3960104 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 165 |
| Conread position: | 1-548 |
| Cow position: | chr9:4306561-4305998 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 380 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 33, 45 |
| Conread position: | 1-548 |
| Cow position: | chr9:4648132-4647562 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 274 |
| Conread position: | 1-548 |
| Cow position: | chr9:5627326-5627898 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 255 |
| Conread position: | 1-548 |
| Cow position: | chr9:6765264-6764693 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 255 |
| Conread position: | 1-548 |
| Cow position: | chr9:9015582-9016153 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 52 |
| Conread position: | 1-548 |
| Cow position: | chr9:10856530-10857099 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 30 |
| Conread position: | 1-548 |
| Cow position: | chr9:17303461-17302894 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 24 |
| Conread position: | 1-548 |
| Cow position: | chr9:18507319-18506745 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 208 |
| Conread position: | 1-548 |
| Cow position: | chr9:19156777-19156213 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 255 |
| Conread position: | 1-548 |
| Cow position: | chr9:22655321-22655890 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 254 |
| Conread position: | 1-548 |
| Cow position: | chr9:23421097-23421665 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 257 |
| Conread position: | 1-548 |
| Cow position: | chr9:27037619-27038186 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 251 |
| Conread position: | 1-548 |
| Cow position: | chr9:28658541-28657973 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 254 |
| Conread position: | 1-548 |
| Cow position: | chr9:29788148-29787598 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 57 |
| Conread position: | 1-548 |
| Cow position: | chr9:30674578-30675154 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 259 |
| Conread position: | 1-548 |
| Cow position: | chr9:32971885-32972446 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 244 |
| Conread position: | 1-548 |
| Cow position: | chr9:52722923-52723486 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 48 |
| Conread position: | 1-548 |
| Cow position: | chr9:54995154-54995719 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 382 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 33, 252 |
| Conread position: | 1-548 |
| Cow position: | chr9:55797592-55797025 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 252 |
| Conread position: | 1-548 |
| Cow position: | chr9:59480342-59479769 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 256 |
| Conread position: | 1-548 |
| Cow position: | chr9:59508662-59508100 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 250 |
| Conread position: | 1-549 |
| Cow position: | chr9:49117258-49117818 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 373 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 33, 83 |
| Conread position: | 1-575 |
| Cow position: | chr9:2496218-2495635 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 241 |
| Conread position: | 2-386 |
| Cow position: | chr9:34676861-34676461 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 32, 83 |
| Conread position: | 2-476 |
| Cow position: | chr9:11157838-11157357 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 115 |
| Conread position: | 4-548 |
| Cow position: | chr9:27098853-27099415 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 250 |
| Conread position: | 5-548 |
| Cow position: | chr9:9327525-9326997 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 376 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 28, 82 |
| Conread position: | 6-528 |
| Cow position: | chr9:35747363-35746830 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 240 |
| Conread position: | 8-492 |
| Cow position: | chr9:3935131-3934633 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 349 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 25, 62 |
| Conread position: | 10-536 |
| Cow position: | chr9:26277174-26277709 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 244 |
| Conread position: | 10-548 |
| Cow position: | chr9:44168106-44168668 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 248 |
| Conread position: | 10-548 |
| Cow position: | chr9:47044464-47045026 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 247 |
| Conread position: | 10-548 |
| Cow position: | chr9:48795776-48795213 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 249 |
| Conread position: | 10-548 |
| Cow position: | chr9:50839950-50840511 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 16 |
| Conread position: | 10-548 |
| Cow position: | chr9:54459984-54459423 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 247 |
| Conread position: | 10-548 |
| Cow position: | chr9:64012713-64012150 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 249 |
| Conread position: | 10-580 |
| Cow position: | chr9:27897534-27898115 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 104 |
| Conread position: | 11-544 |
| Cow position: | chr9:16012383-16011849 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 362 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 23, 183 |
| Conread position: | 11-548 |
| Cow position: | chr9:35593568-35593010 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 31 |
| Conread position: | 17-548 |
| Cow position: | chr9:51591152-51591711 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 367 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 19-545 |
| Cow position: | chr9:26088469-26087928 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 371 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 10, 52 |
| Conread position: | 19-548 |
| Cow position: | chr9:28680725-28681279 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 212 |
| Conread position: | 19-548 |
| Cow position: | chr9:44203544-44203001 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 239 |
| Conread position: | 22-548 |
| Cow position: | chr9:53530253-53530795 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 64 |
| Conread position: | 23-498 |
| Cow position: | chr9:25976062-25976556 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 335 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 11, 207 |
| Conread position: | 44-548 |
| Cow position: | chr9:13312118-13312642 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 211 |
| Conread position: | 62-537 |
| Cow position: | chr9:58190044-58190528 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 333 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 65, 189 |
| Conread position: | 64-533 |
| Cow position: | chr9:3576694-3576204 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 186 |
| Conread position: | 64-548 |
| Cow position: | chr9:3729627-3730123 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 346 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 72, 122 |
| Conread position: | 83-548 |
| Cow position: | chr9:49283439-49283918 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 327 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 51, 112 |
| Conread position: | 141-458 |
| Cow position: | chr9:23860049-23859731 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 10, 89 |
| Conread position: | 141-548 |
| Cow position: | chr9:28024489-28024898 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 50 |
| Conread position: | 141-549 |
| Cow position: | chr9:62444305-62443895 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 282 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 13, 95 |
| Conread position: | 152-439 |
| Cow position: | chr9:28702103-28702386 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 154, 84 |
| Conread position: | 152-547 |
| Cow position: | chr9:17008280-17007881 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 276 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 158, 82 |
| Conread position: | 153-548 |
| Cow position: | chr9:42569899-42570293 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 79 |
| Conread position: | 153-548 |
| Cow position: | chr9:49457008-49457407 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 81 |
| Conread position: | 154-548 |
| Cow position: | chr9:17870178-17870573 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 80 |
| Conread position: | 154-548 |
| Cow position: | chr9:61740351-61739957 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 114, 77 |
| Conread position: | 159-520 |
| Cow position: | chr9:28774553-28774191 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 75 |
| Conread position: | 159-548 |
| Cow position: | chr9:2856533-2856923 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 76 |
| Conread position: | 160-472 |
| Cow position: | chr9:25453152-25452846 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 141, 75 |
| Conread position: | 160-548 |
| Cow position: | chr9:3438271-3438646 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 146, 53 |
| Conread position: | 176-492 |
| Cow position: | chr9:37097327-37097644 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 5, 59 |
| Conread position: | 180-442 |
| Cow position: | chr9:1430102-1429843 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 126, 55 |
| Conread position: | 189-548 |
| Cow position: | chr9:15835965-15835605 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 264 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 117, 29 |
| Conread position: | 248-500 |
| Cow position: | chr9:11712700-11712964 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 58, 64 |
| Conread position: | 248-545 |
| Cow position: | chr9:9577578-9577872 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 58, 8 |
| Conread position: | 249-513 |
| Cow position: | chr9:13529956-13529689 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 56, 142 |
Show alignments to all cow chromosomes.