Cow genome map
| Conread name: | Ova1-OVRM10123A03 |
| Conread position: | 310-676 |
| Cow position: | chr5:53006646-53006998 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 215, 32 |
| Conread position: | 310-680 |
| Cow position: | chr5:5104247-5104615 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 38, 10 |
| Conread position: | 321-553 |
| Cow position: | chr5:53624779-53624553 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 324-680 |
| Cow position: | chr5:11115704-11115373 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 327-507 |
| Cow position: | chr5:28949832-28949653 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 327-672 |
| Cow position: | chr5:54791583-54791241 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 55 |
| Conread position: | 327-680 |
| Cow position: | chr5:48807689-48807333 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 173 |
| Conread position: | 330-628 |
| Cow position: | chr5:18560356-18560056 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 226 |
| Conread position: | 330-629 |
| Cow position: | chr5:4386290-4386589 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 52 |
| Conread position: | 330-672 |
| Cow position: | chr5:4070273-4070608 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 333-680 |
| Cow position: | chr5:48533038-48533358 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 22, 76 |
| Conread position: | 363-630 |
| Cow position: | chr5:2738990-2739251 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 119, 27 |
| Conread position: | 368-537 |
| Cow position: | chr5:41554242-41554078 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 368-664 |
| Cow position: | chr5:62414065-62414355 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 97 |
| Conread position: | 372-596 |
| Cow position: | chr5:29767216-29767441 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 12, 70 |
| Conread position: | 372-677 |
| Cow position: | chr5:28333383-28333089 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 198, 36 |
| Conread position: | 373-646 |
| Cow position: | chr5:76197804-76197545 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 19 |
| Conread position: | 374-677 |
| Cow position: | chr5:42751573-42751867 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 17, 109 |
| Conread position: | 375-562 |
| Cow position: | chr5:20311257-20311071 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 90, 83 |
| Conread position: | 377-593 |
| Cow position: | chr5:63076843-63076616 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 50, 147 |
| Conread position: | 378-672 |
| Cow position: | chr5:75624797-75625087 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 186, 13 |
| Conread position: | 379-591 |
| Cow position: | chr5:60716517-60716306 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 190, 0 |
| Conread position: | 379-628 |
| Cow position: | chr5:16917375-16917132 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 213, 113 |
| Conread position: | 380-680 |
| Cow position: | chr5:45701414-45701709 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 149 |
| Conread position: | 382-671 |
| Cow position: | chr5:44219145-44219435 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 95, 158 |
| Conread position: | 382-677 |
| Cow position: | chr5:32167020-32166745 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 119, 42 |
| Conread position: | 385-680 |
| Cow position: | chr5:43193306-43193022 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 91, 23 |
| Conread position: | 386-679 |
| Cow position: | chr5:46669043-46669320 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 487-680 |
| Cow position: | chr5:34201729-34201542 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 123, 17 |
Show alignments to all cow chromosomes.