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Cow genome map

           
Conread name:
           
Ova1-OVRM10125H10
        

               
Conread position:
               
1-137
               

               
Cow position:
               
chr1:31960084-31960222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
1-161
               

               
Cow position:
               
chr1:12596044-12595885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
114, 124
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr1:71946512-71946351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
119, 14
               

               
Conread position:
               
1-173
               

               
Cow position:
               
chr1:1403619-1403453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:24413303-24413501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
62, 151
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr1:89508416-89508606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:99136571-99136370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
127, 103
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr1:24445767-24445567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr1:1991561-1991350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
120, 54
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr1:51654270-51654498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 155
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr1:89497825-89498029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
117, 45
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr1:4374479-4374260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr1:87440328-87440544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 76
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr1:20204887-20205121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 97
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr1:38401654-38401893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
115, 147
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr1:45289012-45288777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
32, 22
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr1:20384760-20384521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr1:12978540-12978792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 105
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr1:82884530-82884285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 120
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr1:88652490-88652754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 93
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:5135834-5135591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr1:70380286-70380024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
84, 149
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:42874087-42873829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
164, 66
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr1:51968321-51968585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
108, 33
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:95176799-95177059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
105, 70
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr1:83583074-83582805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr1:84255618-84255896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 129
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr1:3882605-3882329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
103, 85
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr1:85162684-85162415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
127, 55
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr1:97696600-97696874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
36, 150
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr1:77683217-77683478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr1:98360545-98360273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
33, 92
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr1:85647922-85647648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr1:93043889-93044162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr1:95056915-95057210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
47, 57
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr1:53458556-53458867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 123
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr1:53397851-53398148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr1:98551576-98551913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 147
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chr1:95499632-95499306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 22
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chr1:97090187-97090507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
325, 64
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr1:100761939-100762268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 28
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr1:43872471-43872108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
106, 153
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr1:53520767-53521106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
30, 118
               

               
Conread position:
               
1-344
               

               
Cow position:
               
chr1:70828763-70829098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 18
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr1:64678561-64678885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
318, 55
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr1:68619074-68618734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 114
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr1:70434863-70435192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
108, 80
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr1:8129107-8128771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 50
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr1:55705390-55705038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 149
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr1:68855030-68855376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 40
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr1:12464806-12464455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 118
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr1:41696918-41697264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 115
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr1:43505384-43505734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 148
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr1:75744720-75745070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 106
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr1:54206959-54206608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 146
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr1:86682703-86682356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 127
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr1:54478184-54478528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
133, 107
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr1:83072303-83072654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 55
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chr1:41056543-41056896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 29
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chr1:59518780-59519128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 61
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr1:18936970-18936619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
33, 86
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr1:84812073-84811724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 46
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr1:86110871-86110529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 107
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr1:44506827-44507185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
34, 149
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr1:73960565-73960905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
352, 106
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr1:87197687-87198048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 55
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr1:40599903-40600244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 93
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr1:61005702-61005339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 102
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr1:61884779-61885130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 55
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr1:71295451-71295085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 101
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr1:72304511-72304182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
352, 65
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr1:82936726-82936387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
321, 62
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr1:90621651-90621286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 99
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr1:79844326-79844699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 40
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr1:90976227-90975856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
36, 117
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr1:91023608-91023246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 146
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr1:61742108-61741741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 51
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr1:69678462-69678104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
120, 45
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr1:101634564-101634922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chr1:37322142-37321781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 147
               

               
Conread position:
               
1-485
               

               
Cow position:
               
chr1:41004503-41004020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
2-335
               

               
Cow position:
               
chr1:33409767-33409430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
34, 105
               

               
Conread position:
               
2-342
               

               
Cow position:
               
chr1:34686055-34686365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
112, 37
               

               
Conread position:
               
2-348
               

               
Cow position:
               
chr1:37707104-37706763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
21, 48
               

               
Conread position:
               
2-350
               

               
Cow position:
               
chr1:78091893-78092249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
54, 33
               

               
Conread position:
               
2-359
               

               
Cow position:
               
chr1:88913179-88913536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 126
               

               
Conread position:
               
2-362
               

               
Cow position:
               
chr1:33719978-33720324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
29, 87
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr1:69415852-69415638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
46, 62
               

               
Conread position:
               
3-234
               

               
Cow position:
               
chr1:96478554-96478789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 127
               

               
Conread position:
               
3-251
               

               
Cow position:
               
chr1:81868864-81868623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
103, 77
               

               
Conread position:
               
3-265
               

               
Cow position:
               
chr1:44125785-44125518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
108, 153
               

               
Conread position:
               
3-276
               

               
Cow position:
               
chr1:83747808-83748073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
121, 52
               

               
Conread position:
               
3-284
               

               
Cow position:
               
chr1:52956115-52956387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
123, 146
               

               
Conread position:
               
3-284
               

               
Cow position:
               
chr1:90868577-90868309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
3-320
               

               
Cow position:
               
chr1:11729043-11729346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
3-340
               

               
Cow position:
               
chr1:77720373-77720062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
317, 118
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr1:51769949-51770295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
29, 112
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chr1:70538469-70538810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 145
               

               
Conread position:
               
3-347
               

               
Cow position:
               
chr1:5858826-5858467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
30, 121
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr1:26895964-26895606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
105, 56
               

               
Conread position:
               
3-349
               

               
Cow position:
               
chr1:4691456-4691795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 111
               

               
Conread position:
               
3-350
               

               
Cow position:
               
chr1:42398335-42397987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
33, 121
               

               
Conread position:
               
3-350
               

               
Cow position:
               
chr1:78838661-78838995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
322, 5
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chr1:26178949-26178590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
51, 34
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chr1:42541458-42541810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
32, 16
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chr1:7971283-7971621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
92, 52
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chr1:70343903-70344264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
29, 105
               

               
Conread position:
               
3-366
               

               
Cow position:
               
chr1:23488647-23488280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
29, 131
               

               
Conread position:
               
3-367
               

               
Cow position:
               
chr1:4243481-4243106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 111
               

               
Conread position:
               
3-367
               

               
Cow position:
               
chr1:42175586-42175951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 105
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr1:77099686-77099527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
112, 71
               

               
Conread position:
               
4-171
               

               
Cow position:
               
chr1:29671657-29671495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 62
               

               
Conread position:
               
4-175
               

               
Cow position:
               
chr1:47008894-47009065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
163, 99
               

               
Conread position:
               
4-187
               

               
Cow position:
               
chr1:3035130-3034957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
4-188
               

               
Cow position:
               
chr1:62920030-62920211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
124, 15
               

               
Conread position:
               
4-189
               

               
Cow position:
               
chr1:99039490-99039311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
4-191
               

               
Cow position:
               
chr1:45535568-45535753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr1:54199521-54199317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
33, 145
               

               
Conread position:
               
4-207
               

               
Cow position:
               
chr1:85301281-85301479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
4-215
               

               
Cow position:
               
chr1:63390911-63390697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
32, 53
               

               
Conread position:
               
4-222
               

               
Cow position:
               
chr1:44769250-44769032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
87, 144
               

               
Conread position:
               
4-223
               

               
Cow position:
               
chr1:55135696-55135914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
180, 55
               

               
Conread position:
               
4-225
               

               
Cow position:
               
chr1:6788423-6788203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
45, 56
               

               
Conread position:
               
4-229
               

               
Cow position:
               
chr1:98310928-98311156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
22, 123
               

               
Conread position:
               
4-234
               

               
Cow position:
               
chr1:91816907-91816682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 52
               

               
Conread position:
               
4-239
               

               
Cow position:
               
chr1:43703270-43703503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
124, 110
               

               
Conread position:
               
4-239
               

               
Cow position:
               
chr1:91800739-91800504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
126, 85
               

               
Conread position:
               
4-246
               

               
Cow position:
               
chr1:62291828-62291600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
4-246
               

               
Cow position:
               
chr1:81563599-81563846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
109, 150
               

               
Conread position:
               
4-255
               

               
Cow position:
               
chr1:89230365-89230121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
4-262
               

               
Cow position:
               
chr1:30047731-30047486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
105, 80
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr1:71136015-71136271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
62, 35
               

               
Conread position:
               
4-265
               

               
Cow position:
               
chr1:74947260-74946999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
104, 215
               

               
Conread position:
               
4-265
               

               
Cow position:
               
chr1:75933135-75933385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
4-267
               

               
Cow position:
               
chr1:4291021-4291285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
27, 146
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr1:53671876-53671620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
112, 32
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr1:57900876-57900594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
158, 55
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr1:68253454-68253725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
119, 97
               

               
Conread position:
               
4-276
               

               
Cow position:
               
chr1:69264678-69264938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
102, 42
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr1:57297336-57297628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
27, 151
               

               
Conread position:
               
4-284
               

               
Cow position:
               
chr1:4032488-4032770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
33, 147
               

               
Conread position:
               
4-284
               

               
Cow position:
               
chr1:89742134-89741857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 89
               

               
Conread position:
               
4-289
               

               
Cow position:
               
chr1:70312942-70312653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
159, 81
               

               
Conread position:
               
4-296
               

               
Cow position:
               
chr1:41115852-41115572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
4-305
               

               
Cow position:
               
chr1:52039499-52039793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 70
               

               
Conread position:
               
4-312
               

               
Cow position:
               
chr1:24534391-24534094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
4-320
               

               
Cow position:
               
chr1:96305113-96304797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
83, 33
               

               
Conread position:
               
4-322
               

               
Cow position:
               
chr1:22827030-22827323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
115, 80
               

               
Conread position:
               
4-329
               

               
Cow position:
               
chr1:6958741-6959066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
162, 37
               

               
Conread position:
               
4-331
               

               
Cow position:
               
chr1:93528557-93528883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
34, 126
               

               
Conread position:
               
4-332
               

               
Cow position:
               
chr1:20950584-20950907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
265, 110
               

               
Conread position:
               
4-332
               

               
Cow position:
               
chr1:86113548-86113206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 151
               

               
Conread position:
               
4-335
               

               
Cow position:
               
chr1:6941328-6941659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
162, 37
               

               
Conread position:
               
4-335
               

               
Cow position:
               
chr1:78809743-78810073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
233, 110
               

               
Conread position:
               
4-336
               

               
Cow position:
               
chr1:16767218-16766892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
242, 31
               

               
Conread position:
               
4-337
               

               
Cow position:
               
chr1:39225062-39224744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
134, 37
               

               
Conread position:
               
4-340
               

               
Cow position:
               
chr1:31348578-31348241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
33, 150
               

               
Conread position:
               
4-343
               

               
Cow position:
               
chr1:57575896-57575563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 96
               

               
Conread position:
               
4-343
               

               
Cow position:
               
chr1:89448760-89449099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 143
               

               
Conread position:
               
4-343
               

               
Cow position:
               
chr1:101632476-101632151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
4-347
               

               
Cow position:
               
chr1:3323724-3324079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr1:8484-8825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
33, 49
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr1:874509-874869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
41, 19
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr1:3923932-3923598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 90
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr1:7748080-7748422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
33, 122
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr1:7752246-7752586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
33, 122
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr1:14206293-14205958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
26, 71
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr1:21787193-21787530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
110, 144
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr1:22192626-22192976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
32, 148
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr1:22525741-22526080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
115, 20
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr1:22728914-22729260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 122
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr1:23186934-23186596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
31, 63
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr1:25281813-25281471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
47, 160
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr1:50931113-50930774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
310, 70
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr1:87095368-87095005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
33, 157
               

               
Conread position:
               
4-348
               

               
Cow position:
               
chr1:91066290-91065951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
42, 56
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr1:33207008-33206667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
187, 81
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr1:95100825-95101158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
224, 42
               

               
Conread position:
               
4-350
               

               
Cow position:
               
chr1:71119375-71119729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
40, 114
               

               
Conread position:
               
4-351
               

               
Cow position:
               
chr1:68763819-68763475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
289, 38
               

               
Conread position:
               
4-352
               

               
Cow position:
               
chr1:16962147-16961783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
30, 104
               

               
Conread position:
               
4-352
               

               
Cow position:
               
chr1:43352794-43352442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
15, 24
               

               
Conread position:
               
4-352
               

               
Cow position:
               
chr1:48105571-48105215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 145
               

               
Conread position:
               
4-352
               

               
Cow position:
               
chr1:48444331-48443981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
236, 120
               

               
Conread position:
               
4-352
               

               
Cow position:
               
chr1:61391926-61391585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
102, 145
               

               
Conread position:
               
4-352
               

               
Cow position:
               
chr1:64572376-64572724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 111
               

               
Conread position:
               
4-352
               

               
Cow position:
               
chr1:68817936-68817591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 112
               

               
Conread position:
               
4-352
               

               
Cow position:
               
chr1:101834687-101835026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
254, 55
               

               
Conread position:
               
4-354
               

               
Cow position:
               
chr1:78857458-78857115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 59
               

               
Conread position:
               
4-358
               

               
Cow position:
               
chr1:61564659-61564998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
265, 145
               

               
Conread position:
               
4-359
               

               
Cow position:
               
chr1:19482212-19481883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
312, 45
               

               
Conread position:
               
4-359
               

               
Cow position:
               
chr1:64804241-64803880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
33, 84
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chr1:52435133-52435494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
33, 70
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chr1:74084334-74083972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
35, 149
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr1:484606-484244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
33, 113
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr1:24542719-24542350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr1:24778122-24777764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
237, 21
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr1:31272578-31272235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
351, 81
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr1:31934374-31934723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
38, 110
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr1:53369941-53370303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
29, 70
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr1:57880926-57880562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
32, 124
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr1:63434943-63434579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr1:69539560-69539901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
315, 104
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr1:81290377-81290724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 25
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr1:96964183-96964538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
33, 21
               

               
Conread position:
               
4-362
               

               
Cow position:
               
chr1:38753780-38754137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
27, 133
               

               
Conread position:
               
4-362
               

               
Cow position:
               
chr1:42545924-42545580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
33, 148
               

               
Conread position:
               
4-362
               

               
Cow position:
               
chr1:72068976-72068613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 144
               

               
Conread position:
               
4-365
               

               
Cow position:
               
chr1:29935515-29935169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
126, 29
               

               
Conread position:
               
4-367
               

               
Cow position:
               
chr1:11853823-11853461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
27, 112
               

               
Conread position:
               
4-367
               

               
Cow position:
               
chr1:35554767-35555139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
33, 146
               

               
Conread position:
               
4-368
               

               
Cow position:
               
chr1:21955510-21955147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
26, 113
               

               
Conread position:
               
4-368
               

               
Cow position:
               
chr1:28563706-28563329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
27, 79
               

               
Conread position:
               
4-368
               

               
Cow position:
               
chr1:34771641-34771272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
126, 83
               

               
Conread position:
               
4-369
               

               
Cow position:
               
chr1:102784826-102785175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
309, 47
               

               
Conread position:
               
4-371
               

               
Cow position:
               
chr1:56225329-56225695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 117
               

               
Conread position:
               
4-371
               

               
Cow position:
               
chr1:76740821-76740444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
33, 147
               

               
Conread position:
               
4-376
               

               
Cow position:
               
chr1:92963261-92963609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
145, 38
               

               
Conread position:
               
4-382
               

               
Cow position:
               
chr1:16855828-16855464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
314, 45
               

               
Conread position:
               
5-160
               

               
Cow position:
               
chr1:94404076-94404229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
5-193
               

               
Cow position:
               
chr1:98563027-98563210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
5-197
               

               
Cow position:
               
chr1:44155113-44155302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
59, 82
               

               
Conread position:
               
5-219
               

               
Cow position:
               
chr1:79278583-79278373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chr1:53425038-53425270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
30, 117
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chr1:72731902-72732134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
121, 50
               

               
Conread position:
               
5-239
               

               
Cow position:
               
chr1:7350406-7350642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
106, 148
               

               
Conread position:
               
5-255
               

               
Cow position:
               
chr1:64251188-64250942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
116, 72
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr1:94261406-94261664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 39
               

               
Conread position:
               
5-276
               

               
Cow position:
               
chr1:48730960-48730703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
28, 14
               

               
Conread position:
               
5-277
               

               
Cow position:
               
chr1:3962828-3962553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
109, 30
               

               
Conread position:
               
5-282
               

               
Cow position:
               
chr1:18780470-18780193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
111, 37
               

               
Conread position:
               
5-284
               

               
Cow position:
               
chr1:52994891-52995162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
114, 34
               

               
Conread position:
               
5-284
               

               
Cow position:
               
chr1:81613253-81613528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 92
               

               
Conread position:
               
5-316
               

               
Cow position:
               
chr1:76019829-76019526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
32, 51
               

               
Conread position:
               
5-319
               

               
Cow position:
               
chr1:96277191-96276879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 123
               

               
Conread position:
               
5-320
               

               
Cow position:
               
chr1:13637809-13637490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 115
               

               
Conread position:
               
5-328
               

               
Cow position:
               
chr1:71079092-71078776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
314, 24
               

               
Conread position:
               
5-329
               

               
Cow position:
               
chr1:31608033-31607704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
27, 112
               

               
Conread position:
               
5-336
               

               
Cow position:
               
chr1:53622823-53623148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 80
               

               
Conread position:
               
5-343
               

               
Cow position:
               
chr1:82337917-82337579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
130, 109
               

               
Conread position:
               
5-343
               

               
Cow position:
               
chr1:101860625-101860286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 77
               

               
Conread position:
               
5-346
               

               
Cow position:
               
chr1:97954595-97954279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
317, 36
               

               
Conread position:
               
5-347
               

               
Cow position:
               
chr1:16061157-16060803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
28, 17
               

               
Conread position:
               
5-348
               

               
Cow position:
               
chr1:14379671-14379344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
317, 132
               

               
Conread position:
               
5-348
               

               
Cow position:
               
chr1:25383526-25383875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 146
               

               
Conread position:
               
5-349
               

               
Cow position:
               
chr1:47658212-47658555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
276, 52
               

               
Conread position:
               
5-351
               

               
Cow position:
               
chr1:1956464-1956129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
266, 41
               

               
Conread position:
               
5-351
               

               
Cow position:
               
chr1:74956158-74955823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
30, 145
               

               
Conread position:
               
5-352
               

               
Cow position:
               
chr1:101713985-101714326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
102, 32
               

               
Conread position:
               
5-354
               

               
Cow position:
               
chr1:102266409-102266058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
28, 86
               

               
Conread position:
               
5-359
               

               
Cow position:
               
chr1:62519221-62519584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
32, 108
               

               
Conread position:
               
5-360
               

               
Cow position:
               
chr1:1981250-1980893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 48
               

               
Conread position:
               
5-361
               

               
Cow position:
               
chr1:5597334-5596992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 51
               

               
Conread position:
               
5-361
               

               
Cow position:
               
chr1:89076769-89076407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 14
               

               
Conread position:
               
5-361
               

               
Cow position:
               
chr1:93499490-93499838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 53
               

               
Conread position:
               
5-362
               

               
Cow position:
               
chr1:55229848-55230192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
31, 67
               

               
Conread position:
               
5-364
               

               
Cow position:
               
chr1:41047436-41047089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
131, 42
               

               
Conread position:
               
5-367
               

               
Cow position:
               
chr1:724602-724962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
127, 15
               

               
Conread position:
               
5-372
               

               
Cow position:
               
chr1:51445743-51446114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
31, 85
               

               
Conread position:
               
5-377
               

               
Cow position:
               
chr1:197140-196775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
314, 63
               

               
Conread position:
               
6-215
               

               
Cow position:
               
chr1:95654847-95654643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
140, 62
               

               
Conread position:
               
6-236
               

               
Cow position:
               
chr1:70026479-70026254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
160, 102
               

               
Conread position:
               
6-238
               

               
Cow position:
               
chr1:60281235-60281466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
122, 91
               

               
Conread position:
               
6-251
               

               
Cow position:
               
chr1:100393296-100393057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
165, 50
               

               
Conread position:
               
6-256
               

               
Cow position:
               
chr1:91039308-91039063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
64, 48
               

               
Conread position:
               
6-267
               

               
Cow position:
               
chr1:39069090-39068835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
6-276
               

               
Cow position:
               
chr1:47233614-47233348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
6-276
               

               
Cow position:
               
chr1:91875043-91874787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
6-276
               

               
Cow position:
               
chr1:93554708-93554966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
31, 50
               

               
Conread position:
               
6-322
               

               
Cow position:
               
chr1:49433397-49433084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
49, 36
               

               
Conread position:
               
6-332
               

               
Cow position:
               
chr1:98030783-98031105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 35
               

               
Conread position:
               
6-346
               

               
Cow position:
               
chr1:47886624-47886278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
30, 170
               

               
Conread position:
               
6-348
               

               
Cow position:
               
chr1:63530438-63530766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
31, 90
               

               
Conread position:
               
6-348
               

               
Cow position:
               
chr1:79165221-79164876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
31, 123
               

               
Conread position:
               
6-349
               

               
Cow position:
               
chr1:42887400-42887073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 59
               

               
Conread position:
               
6-349
               

               
Cow position:
               
chr1:54156873-54156527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
32, 93
               

               
Conread position:
               
6-355
               

               
Cow position:
               
chr1:64302383-64302037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
116, 108
               

               
Conread position:
               
6-357
               

               
Cow position:
               
chr1:99609232-99609586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
28, 120
               

               
Conread position:
               
6-361
               

               
Cow position:
               
chr1:54258428-54258787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 72
               

               
Conread position:
               
6-362
               

               
Cow position:
               
chr1:20667877-20667530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 54
               

               
Conread position:
               
7-142
               

               
Cow position:
               
chr1:3456736-3456868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
7-237
               

               
Cow position:
               
chr1:5023890-5023670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
7-252
               

               
Cow position:
               
chr1:92433866-92434107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
7-290
               

               
Cow position:
               
chr1:3167203-3166930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
253, 74
               

               
Conread position:
               
7-330
               

               
Cow position:
               
chr1:62964144-62964456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 45
               

               
Conread position:
               
7-356
               

               
Cow position:
               
chr1:78810905-78811252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
309, 79
               

               
Conread position:
               
8-233
               

               
Cow position:
               
chr1:101946843-101946626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
8-237
               

               
Cow position:
               
chr1:56634964-56635190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
22, 32
               

               
Conread position:
               
8-240
               

               
Cow position:
               
chr1:85774327-85774552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
8-255
               

               
Cow position:
               
chr1:37309647-37309409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
34, 78
               

               
Conread position:
               
8-264
               

               
Cow position:
               
chr1:19465924-19466170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
56, 17
               

               
Conread position:
               
8-264
               

               
Cow position:
               
chr1:89349829-89350084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 108
               

               
Conread position:
               
8-284
               

               
Cow position:
               
chr1:85550211-85549938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
266, 106
               

               
Conread position:
               
8-294
               

               
Cow position:
               
chr1:42555129-42555415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
29, 48
               

               
Conread position:
               
8-330
               

               
Cow position:
               
chr1:102349888-102349571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
28, 145
               

               
Conread position:
               
8-335
               

               
Cow position:
               
chr1:6077765-6078093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
73, 97
               

               
Conread position:
               
8-347
               

               
Cow position:
               
chr1:85028825-85029141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
101, 48
               

               
Conread position:
               
8-352
               

               
Cow position:
               
chr1:12871143-12870800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
130, 89
               

               
Conread position:
               
8-357
               

               
Cow position:
               
chr1:39427126-39426800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
313, 30
               

               
Conread position:
               
8-361
               

               
Cow position:
               
chr1:24133191-24132841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 51
               

               
Conread position:
               
8-361
               

               
Cow position:
               
chr1:72011943-72011603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
27, 105
               

               
Conread position:
               
8-363
               

               
Cow position:
               
chr1:10778433-10778777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
336, 90
               

               
Conread position:
               
8-364
               

               
Cow position:
               
chr1:53369072-53369419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
9-238
               

               
Cow position:
               
chr1:3720566-3720350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chr1:71253685-71253419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
9-294
               

               
Cow position:
               
chr1:89342127-89341832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 144
               

               
Conread position:
               
9-320
               

               
Cow position:
               
chr1:102756562-102756260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
28, 99
               

               
Conread position:
               
9-348
               

               
Cow position:
               
chr1:33331217-33330896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
310, 37
               

               
Conread position:
               
9-348
               

               
Cow position:
               
chr1:92197332-92197660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 47
               

               
Conread position:
               
9-354
               

               
Cow position:
               
chr1:5010972-5010621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
23, 114
               

               
Conread position:
               
10-276
               

               
Cow position:
               
chr1:74822324-74822581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
207, 41
               

               
Conread position:
               
10-343
               

               
Cow position:
               
chr1:45555233-45555566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 125
               

               
Conread position:
               
12-238
               

               
Cow position:
               
chr1:93810300-93810522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
72, 105
               

               
Conread position:
               
12-240
               

               
Cow position:
               
chr1:89485444-89485675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 139
               

               
Conread position:
               
12-320
               

               
Cow position:
               
chr1:99642495-99642194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
12-326
               

               
Cow position:
               
chr1:88926519-88926198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 107
               

               
Conread position:
               
12-340
               

               
Cow position:
               
chr1:24581454-24581764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
12-356
               

               
Cow position:
               
chr1:96472316-96472633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
309, 96
               

               
Conread position:
               
12-361
               

               
Cow position:
               
chr1:89510051-89509713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 47
               

               
Conread position:
               
12-367
               

               
Cow position:
               
chr1:89381145-89381498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 104
               

               
Conread position:
               
12-371
               

               
Cow position:
               
chr1:10632919-10633269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
304, 82
               

               
Conread position:
               
13-203
               

               
Cow position:
               
chr1:93228398-93228583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
93, 116
               

               
Conread position:
               
13-291
               

               
Cow position:
               
chr1:39510177-39509911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
235, 43
               

               
Conread position:
               
13-335
               

               
Cow position:
               
chr1:100324871-100324565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
307, 24
               

               
Conread position:
               
13-336
               

               
Cow position:
               
chr1:36880150-36880481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
20, 90
               

               
Conread position:
               
13-360
               

               
Cow position:
               
chr1:79640418-79640072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 21
               

               
Conread position:
               
14-275
               

               
Cow position:
               
chr1:100800229-100800480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
160, 82
               

               
Conread position:
               
14-284
               

               
Cow position:
               
chr1:34300677-34300413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
14-332
               

               
Cow position:
               
chr1:101280843-101280547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
266, 76
               

               
Conread position:
               
14-349
               

               
Cow position:
               
chr1:42869063-42868743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
14-359
               

               
Cow position:
               
chr1:72105286-72105618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
332, 8
               

               
Conread position:
               
14-371
               

               
Cow position:
               
chr1:26934388-26934038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 47
               

               
Conread position:
               
15-233
               

               
Cow position:
               
chr1:68951501-68951713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
106, 112
               

               
Conread position:
               
15-336
               

               
Cow position:
               
chr1:92369606-92369945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
119, 133
               

               
Conread position:
               
15-348
               

               
Cow position:
               
chr1:51417646-51417971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
303, 92
               

               
Conread position:
               
15-361
               

               
Cow position:
               
chr1:81569157-81568811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 85
               

               
Conread position:
               
15-365
               

               
Cow position:
               
chr1:4414334-4414006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
104, 113
               

               
Conread position:
               
16-207
               

               
Cow position:
               
chr1:8984810-8984620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
103, 68
               

               
Conread position:
               
16-219
               

               
Cow position:
               
chr1:91370134-91369935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
16-347
               

               
Cow position:
               
chr1:97755391-97755705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
96, 134
               

               
Conread position:
               
16-354
               

               
Cow position:
               
chr1:4701798-4701459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
16, 99
               

               
Conread position:
               
16-360
               

               
Cow position:
               
chr1:53374305-53374643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
15, 133
               

               
Conread position:
               
16-366
               

               
Cow position:
               
chr1:35600423-35600066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
16, 93
               

               
Conread position:
               
17-347
               

               
Cow position:
               
chr1:20104144-20104471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 87
               

               
Conread position:
               
19-198
               

               
Cow position:
               
chr1:57635339-57635515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
19-332
               

               
Cow position:
               
chr1:43389172-43388864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
301, 54
               

               
Conread position:
               
19-355
               

               
Cow position:
               
chr1:3607688-3608007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
302, 96
               

               
Conread position:
               
19-361
               

               
Cow position:
               
chr1:71666064-71665715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
12, 87
               

               
Conread position:
               
20-332
               

               
Cow position:
               
chr1:17196751-17196435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 127
               

               
Conread position:
               
20-361
               

               
Cow position:
               
chr1:5423858-5423515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
149, 55
               

               
Conread position:
               
21-277
               

               
Cow position:
               
chr1:3790186-3789939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
89, 107
               

               
Conread position:
               
21-335
               

               
Cow position:
               
chr1:58754915-58754605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 32
               

               
Conread position:
               
22-274
               

               
Cow position:
               
chr1:9437428-9437162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
92, 106
               

               
Conread position:
               
22-347
               

               
Cow position:
               
chr1:89388224-89388548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 34
               

               
Conread position:
               
22-348
               

               
Cow position:
               
chr1:261598-261258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
94, 34
               

               
Conread position:
               
22-361
               

               
Cow position:
               
chr1:77986542-77986198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
13, 87
               

               
Conread position:
               
22-361
               

               
Cow position:
               
chr1:84104173-84103838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
15, 87
               

               
Conread position:
               
24-252
               

               
Cow position:
               
chr1:80900000-80900226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
106, 84
               

               
Conread position:
               
26-181
               

               
Cow position:
               
chr1:3061702-3061546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
137, 123
               

               
Conread position:
               
26-349
               

               
Cow position:
               
chr1:42482087-42482407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
5, 77
               

               
Conread position:
               
27-340
               

               
Cow position:
               
chr1:98511813-98512135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
18, 98
               

               
Conread position:
               
29-172
               

               
Cow position:
               
chr1:22466623-22466481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
51, 30
               

               
Conread position:
               
29-276
               

               
Cow position:
               
chr1:45553356-45553113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
94, 119
               

               
Conread position:
               
29-290
               

               
Cow position:
               
chr1:7023008-7023265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 59
               

               
Conread position:
               
29-314
               

               
Cow position:
               
chr1:23999033-23998754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
219, 27
               

               
Conread position:
               
29-332
               

               
Cow position:
               
chr1:69551596-69551289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
185, 27
               

               
Conread position:
               
29-337
               

               
Cow position:
               
chr1:98059937-98060254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
87, 221
               

               
Conread position:
               
29-342
               

               
Cow position:
               
chr1:53650902-53651179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
268, 20
               

               
Conread position:
               
29-343
               

               
Cow position:
               
chr1:68845269-68844955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
40, 78
               

               
Conread position:
               
29-348
               

               
Cow position:
               
chr1:56618763-56618450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 97
               

               
Conread position:
               
29-348
               

               
Cow position:
               
chr1:78794337-78794030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
290, 93
               

               
Conread position:
               
29-349
               

               
Cow position:
               
chr1:10716390-10716712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
101, 48
               

               
Conread position:
               
29-361
               

               
Cow position:
               
chr1:41138244-41137926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
290, 84
               

               
Conread position:
               
29-362
               

               
Cow position:
               
chr1:81477981-81477643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 10
               

               
Conread position:
               
30-255
               

               
Cow position:
               
chr1:61543029-61542809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
30-348
               

               
Cow position:
               
chr1:65028418-65028724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 119
               

               
Conread position:
               
30-367
               

               
Cow position:
               
chr1:31795114-31794784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
256, 33
               

               
Conread position:
               
31-276
               

               
Cow position:
               
chr1:67688691-67688453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
17, 92
               

               
Conread position:
               
31-344
               

               
Cow position:
               
chr1:27463021-27463330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
84, 37
               

               
Conread position:
               
31-355
               

               
Cow position:
               
chr1:72356248-72356581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
223, 134
               

               
Conread position:
               
41-252
               

               
Cow position:
               
chr1:19227155-19226950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
41-276
               

               
Cow position:
               
chr1:37886910-37886682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
76, 107
               

               
Conread position:
               
41-359
               

               
Cow position:
               
chr1:71350823-71350508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
241, 38
               

               
Conread position:
               
41-361
               

               
Cow position:
               
chr1:635785-635465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
245, 72
               

               
Conread position:
               
42-355
               

               
Cow position:
               
chr1:68827004-68826711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
51-361
               

               
Cow position:
               
chr1:47790756-47790448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
78, 95
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:51044395-51044145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
232, 73
               

               
Conread position:
               
52-352
               

               
Cow position:
               
chr1:102306233-102305937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
18, 97
               

               
Conread position:
               
52-370
               

               
Cow position:
               
chr1:78096835-78097149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
57-265
               

               
Cow position:
               
chr1:5155303-5155098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
21, 41
               

               
Conread position:
               
57-377
               

               
Cow position:
               
chr1:49825154-49824831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
61, 96
               

               
Conread position:
               
58-289
               

               
Cow position:
               
chr1:80841569-80841791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
211, 51
               

               
Conread position:
               
59-255
               

               
Cow position:
               
chr1:43822317-43822509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
5, 89
               

               
Conread position:
               
59-263
               

               
Cow position:
               
chr1:48769721-48769919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
59-264
               

               
Cow position:
               
chr1:15902409-15902614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
64, 75
               

               
Conread position:
               
59-264
               

               
Cow position:
               
chr1:99793461-99793667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
67, 92
               

               
Conread position:
               
59-265
               

               
Cow position:
               
chr1:52052803-52052597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
67, 55
               

               
Conread position:
               
59-276
               

               
Cow position:
               
chr1:8347041-8347253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
59-276
               

               
Cow position:
               
chr1:95153137-95153352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
48, 89
               

               
Conread position:
               
59-284
               

               
Cow position:
               
chr1:50991852-50992072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
202, 38
               

               
Conread position:
               
59-331
               

               
Cow position:
               
chr1:21954314-21954038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
87, 147
               

               
Conread position:
               
59-332
               

               
Cow position:
               
chr1:22944108-22943838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
98, 57
               

               
Conread position:
               
59-340
               

               
Cow position:
               
chr1:34856713-34856427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
56, 69
               

               
Conread position:
               
59-340
               

               
Cow position:
               
chr1:72813532-72813815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
210, 89
               

               
Conread position:
               
59-347
               

               
Cow position:
               
chr1:75250029-75250317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
62, 89
               

               
Conread position:
               
59-348
               

               
Cow position:
               
chr1:22730663-22730939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
261, 23
               

               
Conread position:
               
59-348
               

               
Cow position:
               
chr1:65103537-65103835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
82, 38
               

               
Conread position:
               
59-355
               

               
Cow position:
               
chr1:69695074-69694794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
100, 55
               

               
Conread position:
               
59-356
               

               
Cow position:
               
chr1:82513438-82513137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 57
               

               
Conread position:
               
59-359
               

               
Cow position:
               
chr1:30189064-30189374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
47, 87
               

               
Conread position:
               
59-361
               

               
Cow position:
               
chr1:46030877-46031181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
197, 66
               

               
Conread position:
               
59-361
               

               
Cow position:
               
chr1:90904836-90904537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 36
               

               
Conread position:
               
59-365
               

               
Cow position:
               
chr1:73458176-73457871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
186, 61
               

               
Conread position:
               
60-197
               

               
Cow position:
               
chr1:41695518-41695654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
60-286
               

               
Cow position:
               
chr1:96947798-96947583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
60-336
               

               
Cow position:
               
chr1:49082659-49082940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
210, 103
               

               
Conread position:
               
63-225
               

               
Cow position:
               
chr1:61560805-61560643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
60, 85
               

               
Conread position:
               
63-326
               

               
Cow position:
               
chr1:37124047-37124308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
60, 89
               

               
Conread position:
               
63-330
               

               
Cow position:
               
chr1:5128365-5128643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
49, 90
               

               
Conread position:
               
63-346
               

               
Cow position:
               
chr1:43855223-43855493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
112, 74
               

               
Conread position:
               
63-348
               

               
Cow position:
               
chr1:627883-628174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
91, 51
               

               
Conread position:
               
63-353
               

               
Cow position:
               
chr1:101158838-101159138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
51, 15
               

               
Conread position:
               
63-364
               

               
Cow position:
               
chr1:48214240-48213921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
47, 66
               

               
Conread position:
               
63-364
               

               
Cow position:
               
chr1:53402703-53403002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
207, 62
               

               
Conread position:
               
63-370
               

               
Cow position:
               
chr1:52467223-52467512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 84
               

               
Conread position:
               
63-423
               

               
Cow position:
               
chr1:98583679-98584026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 50
               

               
Conread position:
               
64-255
               

               
Cow position:
               
chr1:6752311-6752121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
90, 56
               

               
Conread position:
               
64-276
               

               
Cow position:
               
chr1:62036726-62036935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
184, 22
               

               
Conread position:
               
65-265
               

               
Cow position:
               
chr1:85866066-85866278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
83, 61
               

               
Conread position:
               
65-266
               

               
Cow position:
               
chr1:4581409-4581207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
39, 63
               

               
Conread position:
               
65-276
               

               
Cow position:
               
chr1:68672676-68672472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 60
               

               
Conread position:
               
65-276
               

               
Cow position:
               
chr1:81580093-81580307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
49, 93
               

               
Conread position:
               
65-312
               

               
Cow position:
               
chr1:91811705-91811949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
56, 49
               

               
Conread position:
               
65-336
               

               
Cow position:
               
chr1:77232650-77232378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 45
               

               
Conread position:
               
65-347
               

               
Cow position:
               
chr1:100576116-100575836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
76, 50
               

               
Conread position:
               
65-348
               

               
Cow position:
               
chr1:15333808-15334095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
49, 89
               

               
Conread position:
               
65-348
               

               
Cow position:
               
chr1:56225711-56225988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 61
               

               
Conread position:
               
65-350
               

               
Cow position:
               
chr1:10942174-10941889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
42, 64
               

               
Conread position:
               
65-350
               

               
Cow position:
               
chr1:10964212-10964497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
42, 64
               

               
Conread position:
               
65-352
               

               
Cow position:
               
chr1:73545984-73545698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
218, 42
               

               
Conread position:
               
65-359
               

               
Cow position:
               
chr1:22823827-22824127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
65-361
               

               
Cow position:
               
chr1:53452466-53452739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
24, 52
               

               
Conread position:
               
66-360
               

               
Cow position:
               
chr1:79135203-79135498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
24, 51
               

               
Conread position:
               
66-361
               

               
Cow position:
               
chr1:79003898-79004201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 81
               

               
Conread position:
               
66-362
               

               
Cow position:
               
chr1:35671466-35671760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 74
               

               
Conread position:
               
69-330
               

               
Cow position:
               
chr1:89158202-89157942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
53, 80
               

               
Conread position:
               
70-284
               

               
Cow position:
               
chr1:186348-186143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
70-330
               

               
Cow position:
               
chr1:92032673-92032411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
163, 38
               

               
Conread position:
               
74-252
               

               
Cow position:
               
chr1:27380393-27380563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
74-345
               

               
Cow position:
               
chr1:46143530-46143264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 49
               

               
Conread position:
               
74-361
               

               
Cow position:
               
chr1:52139700-52139412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
95, 41
               

               
Conread position:
               
75-347
               

               
Cow position:
               
chr1:7739880-7740148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
242, 14
               

               
Conread position:
               
76-276
               

               
Cow position:
               
chr1:86912373-86912568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
76-337
               

               
Cow position:
               
chr1:95072264-95072538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
54, 40
               

               
Conread position:
               
76-360
               

               
Cow position:
               
chr1:3942274-3941996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
245, 10
               

               
Conread position:
               
76-364
               

               
Cow position:
               
chr1:54267999-54267716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 26
               

               
Conread position:
               
77-268
               

               
Cow position:
               
chr1:30136419-30136228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
171, 70
               

               
Conread position:
               
77-353
               

               
Cow position:
               
chr1:3965775-3966040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
199, 48
               

               
Conread position:
               
78-356
               

               
Cow position:
               
chr1:78066602-78066329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 58
               

               
Conread position:
               
79-361
               

               
Cow position:
               
chr1:100852656-100852919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
79-364
               

               
Cow position:
               
chr1:48206598-48206318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 75
               

               
Conread position:
               
80-348
               

               
Cow position:
               
chr1:48618301-48618041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
239, 27
               

               
Conread position:
               
80-348
               

               
Cow position:
               
chr1:88359819-88360091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
168, 41
               

               
Conread position:
               
80-351
               

               
Cow position:
               
chr1:101507296-101507559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
80-363
               

               
Cow position:
               
chr1:80584369-80584651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 33
               

               
Conread position:
               
81-361
               

               
Cow position:
               
chr1:50432548-50432265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
73, 40
               

               
Conread position:
               
82-358
               

               
Cow position:
               
chr1:44946698-44946964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
82-360
               

               
Cow position:
               
chr1:97303304-97303035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
151, 34
               

               
Conread position:
               
83-221
               

               
Cow position:
               
chr1:80904708-80904843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
40, 65
               

               
Conread position:
               
86-335
               

               
Cow position:
               
chr1:64113850-64113607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
29, 62
               

               
Conread position:
               
86-339
               

               
Cow position:
               
chr1:84768935-84768686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
50, 32
               

               
Conread position:
               
86-342
               

               
Cow position:
               
chr1:79146877-79146614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
9, 65
               

               
Conread position:
               
86-361
               

               
Cow position:
               
chr1:52662230-52661960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
46, 35
               

               
Conread position:
               
87-337
               

               
Cow position:
               
chr1:77739661-77739919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 64
               

               
Conread position:
               
87-346
               

               
Cow position:
               
chr1:81481439-81481182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 64
               

               
Conread position:
               
87-361
               

               
Cow position:
               
chr1:70175596-70175323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
50, 25
               

               
Conread position:
               
89-347
               

               
Cow position:
               
chr1:43286291-43286534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
40, 27
               

               
Conread position:
               
90-359
               

               
Cow position:
               
chr1:52912950-52912675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
24, 38
               

               
Conread position:
               
92-353
               

               
Cow position:
               
chr1:102529906-102529642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
165, 23
               

               
Conread position:
               
94-348
               

               
Cow position:
               
chr1:500125-500382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 21
               

               
Conread position:
               
94-356
               

               
Cow position:
               
chr1:57089731-57089465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
34, 55
               

               
Conread position:
               
94-361
               

               
Cow position:
               
chr1:99322617-99322349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
41, 58
               

               
Conread position:
               
97-263
               

               
Cow position:
               
chr1:92590150-92590310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
18, 31
               

               
Conread position:
               
97-344
               

               
Cow position:
               
chr1:97833665-97833899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
33, 19
               

               
Conread position:
               
99-246
               

               
Cow position:
               
chr1:57090933-57091079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
101-348
               

               
Cow position:
               
chr1:85771968-85772210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
195, 28
               

               
Conread position:
               
101-362
               

               
Cow position:
               
chr1:62997756-62998017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
153, 48
               

               
Conread position:
               
105-331
               

               
Cow position:
               
chr1:31256264-31256041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
16, 45
               

               
Conread position:
               
106-332
               

               
Cow position:
               
chr1:33775682-33775449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
22, 41
               

               
Conread position:
               
107-367
               

               
Cow position:
               
chr1:67654356-67654101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
109-353
               

               
Cow position:
               
chr1:81515200-81515450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
145, 17
               

               
Conread position:
               
110-361
               

               
Cow position:
               
chr1:79630936-79630701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
209, 39
               

               
Conread position:
               
110-364
               

               
Cow position:
               
chr1:89158730-89158484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
11, 26
               

               
Conread position:
               
112-255
               

               
Cow position:
               
chr1:83618640-83618494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
91, 37
               

               
Conread position:
               
112-335
               

               
Cow position:
               
chr1:62034862-62034642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
15, 39
               

               
Conread position:
               
112-356
               

               
Cow position:
               
chr1:3605917-3605675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
109, 17
               

               
Conread position:
               
114-352
               

               
Cow position:
               
chr1:15102858-15103095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
114-359
               

               
Cow position:
               
chr1:83025192-83024950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
203, 12
               

               
Conread position:
               
115-359
               

               
Cow position:
               
chr1:72422437-72422188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
155, 32
               

               
Conread position:
               
115-361
               

               
Cow position:
               
chr1:8287660-8287411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
13, 33
               

               
Conread position:
               
116-343
               

               
Cow position:
               
chr1:41027047-41027273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 31
               

               
Conread position:
               
116-347
               

               
Cow position:
               
chr1:98911980-98912213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
153, 35
               

               
Conread position:
               
119-348
               

               
Cow position:
               
chr1:83972739-83972970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
165, 28
               

               
Conread position:
               
119-368
               

               
Cow position:
               
chr1:102768154-102768402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
8, 30
               

               
Conread position:
               
120-335
               

               
Cow position:
               
chr1:31855272-31855036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
14, 28
               

               
Conread position:
               
120-347
               

               
Cow position:
               
chr1:38706878-38706648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
145, 26
               

               
Conread position:
               
120-347
               

               
Cow position:
               
chr1:45575910-45576125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
120-348
               

               
Cow position:
               
chr1:93590608-93590384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
120-350
               

               
Cow position:
               
chr1:4582526-4582759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
121-265
               

               
Cow position:
               
chr1:42537346-42537203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 26
               

               
Conread position:
               
121-276
               

               
Cow position:
               
chr1:808845-808688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 26
               

               
Conread position:
               
121-343
               

               
Cow position:
               
chr1:73721337-73721565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
129, 26
               

               
Conread position:
               
121-347
               

               
Cow position:
               
chr1:27959573-27959342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
136, 28
               

               
Conread position:
               
121-359
               

               
Cow position:
               
chr1:55753239-55753002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
9, 27
               

               
Conread position:
               
121-359
               

               
Cow position:
               
chr1:73020685-73020444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
163, 36
               

               
Conread position:
               
124-362
               

               
Cow position:
               
chr1:85818231-85818474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
162, 29
               

               
Conread position:
               
127-238
               

               
Cow position:
               
chr1:40935784-40935674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
127-252
               

               
Cow position:
               
chr1:80442726-80442850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
99, 22
               

               
Conread position:
               
127-332
               

               
Cow position:
               
chr1:24530485-24530688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
190, 20
               

               
Conread position:
               
127-367
               

               
Cow position:
               
chr1:49334409-49334166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
133, 20
               

               
Conread position:
               
128-361
               

               
Cow position:
               
chr1:45315652-45315412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 19
               

               
Conread position:
               
131-305
               

               
Cow position:
               
chr1:19962040-19962209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
131-343
               

               
Cow position:
               
chr1:759431-759211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
125, 16
               

               
Conread position:
               
131-350
               

               
Cow position:
               
chr1:40212345-40212140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
185, 16
               

               
Conread position:
               
132-348
               

               
Cow position:
               
chr1:95156976-95156759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
189, 17
               

               
Conread position:
               
133-343
               

               
Cow position:
               
chr1:51968525-51968728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
133-363
               

               
Cow position:
               
chr1:96558861-96558625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
135, 107
               

               
Conread position:
               
133-371
               

               
Cow position:
               
chr1:20871570-20871330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
113, 14
               

               
Conread position:
               
135-346
               

               
Cow position:
               
chr1:8788282-8788494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
162, 12
               

               
Conread position:
               
135-360
               

               
Cow position:
               
chr1:68688574-68688797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
182, 12
               

               
Conread position:
               
137-337
               

               
Cow position:
               
chr1:61011174-61011370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
184, 12
               

               
Conread position:
               
137-337
               

               
Cow position:
               
chr1:101439490-101439294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
69, 44
               

               
Conread position:
               
137-343
               

               
Cow position:
               
chr1:49980703-49980909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
182, 10
               

               
Conread position:
               
137-344
               

               
Cow position:
               
chr1:97540628-97540841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
92, 10
               

               
Conread position:
               
137-346
               

               
Cow position:
               
chr1:51860568-51860360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
182, 12
               

               
Conread position:
               
137-359
               

               
Cow position:
               
chr1:95835805-95835577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
133, 10
               

               
Conread position:
               
137-371
               

               
Cow position:
               
chr1:242550-242780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
182, 10
               

               
Conread position:
               
139-348
               

               
Cow position:
               
chr1:100573633-100573422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
181, 108
               

               
Conread position:
               
139-359
               

               
Cow position:
               
chr1:99605192-99604975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
139-361
               

               
Cow position:
               
chr1:6381767-6381999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
144, 8
               

               
Conread position:
               
141-284
               

               
Cow position:
               
chr1:83783933-83783791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
142-369
               

               
Cow position:
               
chr1:7965851-7966075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
141, 7
               

               
Conread position:
               
143-283
               

               
Cow position:
               
chr1:44269090-44269225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
143-361
               

               
Cow position:
               
chr1:4294342-4294565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
116, 92
               

               
Conread position:
               
144-361
               

               
Cow position:
               
chr1:85339386-85339593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
178, 49
               

               
Conread position:
               
149-347
               

               
Cow position:
               
chr1:30948996-30949187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
149-350
               

               
Cow position:
               
chr1:6731184-6731387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
170, 92
               

               
Conread position:
               
149-359
               

               
Cow position:
               
chr1:42774915-42775122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
127, 16
               

               
Conread position:
               
150-360
               

               
Cow position:
               
chr1:71636320-71636111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
28, 90
               

               
Conread position:
               
151-348
               

               
Cow position:
               
chr1:70483328-70483129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
169, 96
               

               
Conread position:
               
151-361
               

               
Cow position:
               
chr1:71946078-71945860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
154-360
               

               
Cow position:
               
chr1:524817-525024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
168, 93
               

               
Conread position:
               
154-366
               

               
Cow position:
               
chr1:55685969-55685756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
94, 125
               

               
Conread position:
               
155-337
               

               
Cow position:
               
chr1:83606440-83606261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
129, 104
               

               
Conread position:
               
155-348
               

               
Cow position:
               
chr1:50585868-50585670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
156-343
               

               
Cow position:
               
chr1:95049855-95049664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
15, 9
               

               
Conread position:
               
156-348
               

               
Cow position:
               
chr1:63460889-63461084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
156-348
               

               
Cow position:
               
chr1:98557108-98556912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
130, 84
               

               
Conread position:
               
156-355
               

               
Cow position:
               
chr1:24656256-24656469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
156-361
               

               
Cow position:
               
chr1:63994544-63994337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
113, 82
               

               
Conread position:
               
156-361
               

               
Cow position:
               
chr1:86840907-86841119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
15, 86
               

               
Conread position:
               
157-331
               

               
Cow position:
               
chr1:50329507-50329679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
123, 34
               

               
Conread position:
               
157-359
               

               
Cow position:
               
chr1:82537942-82538144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
64, 36
               

               
Conread position:
               
159-335
               

               
Cow position:
               
chr1:84815143-84815328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 82
               

               
Conread position:
               
159-345
               

               
Cow position:
               
chr1:29671210-29671017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
159-350
               

               
Cow position:
               
chr1:73534627-73534434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
109, 81
               

               
Conread position:
               
159-350
               

               
Cow position:
               
chr1:94823378-94823181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
111, 79
               

               
Conread position:
               
159-361
               

               
Cow position:
               
chr1:64457979-64458191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
110, 76
               

               
Conread position:
               
160-354
               

               
Cow position:
               
chr1:89835732-89835922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
160, 88
               

               
Conread position:
               
160-359
               

               
Cow position:
               
chr1:69378584-69378381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
115, 78
               

               
Conread position:
               
160-361
               

               
Cow position:
               
chr1:23101691-23101894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
160-361
               

               
Cow position:
               
chr1:77810743-77810545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
23, 12
               

               
Conread position:
               
160-365
               

               
Cow position:
               
chr1:64811251-64811462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
97, 37
               

               
Conread position:
               
160-371
               

               
Cow position:
               
chr1:102730747-102730527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
113, 87
               

               
Conread position:
               
161-318
               

               
Cow position:
               
chr1:6229964-6230120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
148, 86
               

               
Conread position:
               
162-353
               

               
Cow position:
               
chr1:81638565-81638750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
162-353
               

               
Cow position:
               
chr1:89298093-89297895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
122, 61
               

               
Conread position:
               
162-353
               

               
Cow position:
               
chr1:89301702-89301504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
122, 61
               

               
Conread position:
               
162-355
               

               
Cow position:
               
chr1:58420220-58420411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
157, 44
               

               
Conread position:
               
162-361
               

               
Cow position:
               
chr1:32014213-32014413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
157, 97
               

               
Conread position:
               
162-362
               

               
Cow position:
               
chr1:76474540-76474340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
119, 79
               

               
Conread position:
               
162-362
               

               
Cow position:
               
chr1:84594905-84595114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
107, 76
               

               
Conread position:
               
163-356
               

               
Cow position:
               
chr1:32035692-32035500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
163-360
               

               
Cow position:
               
chr1:731955-731754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
108, 77
               

               
Conread position:
               
164-364
               

               
Cow position:
               
chr1:83677305-83677103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
158, 77
               

               
Conread position:
               
164-366
               

               
Cow position:
               
chr1:62469080-62469281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
158, 31
               

               
Conread position:
               
164-382
               

               
Cow position:
               
chr1:4329881-4329669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
153, 26
               

               
Conread position:
               
165-348
               

               
Cow position:
               
chr1:28354577-28354747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
166-361
               

               
Cow position:
               
chr1:11708997-11708803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
153, 75
               

               
Conread position:
               
167-336
               

               
Cow position:
               
chr1:91743437-91743269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
155, 14
               

               
Conread position:
               
167-361
               

               
Cow position:
               
chr1:22828548-22828357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
151, 71
               

               
Conread position:
               
169-348
               

               
Cow position:
               
chr1:77099096-77098921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
147, 33
               

               
Conread position:
               
170-371
               

               
Cow position:
               
chr1:67674578-67674381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
151, 89
               

               
Conread position:
               
171-347
               

               
Cow position:
               
chr1:98742048-98742221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
147, 32
               

               
Conread position:
               
171-358
               

               
Cow position:
               
chr1:90820451-90820264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
148, 26
               

               
Conread position:
               
171-361
               

               
Cow position:
               
chr1:100823063-100823259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
110, 75
               

               
Conread position:
               
178-320
               

               
Cow position:
               
chr1:46354406-46354265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
182-347
               

               
Cow position:
               
chr1:53474193-53474353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
137, 36
               

               
Conread position:
               
182-358
               

               
Cow position:
               
chr1:709863-709688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
57, 90
               

               
Conread position:
               
182-359
               

               
Cow position:
               
chr1:63212222-63212040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
77, 45
               

               
Conread position:
               
182-371
               

               
Cow position:
               
chr1:98317527-98317333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
92, 7
               

               
Conread position:
               
183-343
               

               
Cow position:
               
chr1:92363625-92363469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
136, 55
               

               
Conread position:
               
183-348
               

               
Cow position:
               
chr1:79170115-79169947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
93, 64
               

               
Conread position:
               
183-351
               

               
Cow position:
               
chr1:10470464-10470631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
136, 74
               

               
Conread position:
               
183-352
               

               
Cow position:
               
chr1:53456849-53457022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
104, 24
               

               
Conread position:
               
183-360
               

               
Cow position:
               
chr1:41022457-41022634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
136, 58
               

               
Conread position:
               
185-353
               

               
Cow position:
               
chr1:19384416-19384246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
136, 72
               

               
Conread position:
               
187-354
               

               
Cow position:
               
chr1:30028190-30028019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
82, 61
               

               
Conread position:
               
187-361
               

               
Cow position:
               
chr1:93235888-93235716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
70, 47
               

               
Conread position:
               
189-375
               

               
Cow position:
               
chr1:3034155-3033976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
194-355
               

               
Cow position:
               
chr1:2523012-2523177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
79, 11
               

               
Conread position:
               
194-361
               

               
Cow position:
               
chr1:81615703-81615867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
78, 47
               

               
Conread position:
               
199-335
               

               
Cow position:
               
chr1:1799084-1799225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
199-346
               

               
Cow position:
               
chr1:95976387-95976537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
199-361
               

               
Cow position:
               
chr1:80423678-80423513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
202-361
               

               
Cow position:
               
chr1:50906623-50906463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
118, 56
               

               
Conread position:
               
202-372
               

               
Cow position:
               
chr1:39095545-39095714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
164, 148
               

               
Conread position:
               
206-359
               

               
Cow position:
               
chr1:70476690-70476537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
113, 35
               

               
Conread position:
               
209-363
               

               
Cow position:
               
chr1:73644443-73644287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
110, 49
               

               
Conread position:
               
213-354
               

               
Cow position:
               
chr1:45233059-45233195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
108, 45
               

               
Conread position:
               
227-354
               

               
Cow position:
               
chr1:93960078-93959949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 31
               

               
Conread position:
               
236-367
               

               
Cow position:
               
chr1:87989100-87988970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
37, 22
               
Show alignments to all cow chromosomes.